cluster # 7490

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Schistosoma mansoni
cluster # 7490 cluster # 7490 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7490#0 length = 579 sequences # 1

consensus_7490#1 length = 379 sequences # 4

consensusID : consensus_7490#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 579
fasta sequence

                              [ATCATATTATTATTATTTAATTATTCTACAAATAAAATGTAACGTAAACAATAGATTGTAGTGTCAAGAAAACACAAACATAGAAATCATTCAAAAAGAGAAACAAGGGGAAAGATAAAAAAAGTAGTTGACGATGAATTGTATATACTCAGTAATAATAGTTGTAAAGCAAGATGATTATTATAAAATCTACAGTAAAAATACAATACAAAATGATTGTAATAGTAATAATAATAATCAACTAAAGATTTATTTCCATGATTTATAATCTTTTGTTCTTTTCTTTTTTGATTATAATTCAATTGACAATATAATAATTTGTAATGTTAGTAGTACTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGGTAGTAGTGGTAGTAGTAGTAGTGGTAGTAGTAGTAGTCGGTAGTAGTAGTAGTGGTAGTAGTAGTAGTTAGTAGTAGTAGTAATGGTAGTAGTAGTCGTTAGTAGTAGTGGTAGTAGTAGTAGTAGTCATTAGTAGTAGTAGTAGTAGCGAAGAAGGTAGGGAAGAGAAAAGAAAATTTTTTCCTAGCTAATAAGTTTTTTTTTTCAAA]

[+] EMBL CD075154             [ATCATATTATTATTATTTAATTATTCTACAAATAAAATGTAACGTAAACAATAGATTGTAGTGTCAAGAAAACACAAACATAGAAATCATTCAAAAAGAGAAACAAGGGGAAAGATAAAAAAAGTAGTTGACGATGAATTGTATATACTCAGTAATAATAGTTGTAAAGCAAGATGATTATTATAAAATCTACAGTAAAAATACAATACAAAATGATTGTAATAGTAATAATAATAATCAACTAAAGATTTATTTCCATGATTTATAATCTTTTGTTCTTTTCTTTTTTGATTATAATTCAATTGACAATATAATAATTTGTAATGTTAGTAGTACTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGGTAGTAGTGGTAGTAGTAGTAGTGGTAGTAGTAGTAGTCGGTAGTAGTAGTAGTGGTAGTAGTAGTAGTTAGTAGTAGTAGTAATGGTAGTAGTAGTCGTTAGTAGTAGTGGTAGTAGTAGTAGTAGTCATTAGTAGTAGTAGTAGTAGCGAAGAAGGTAGGGAAGAGAAAAGAAAATTTTTTCCTAGCTAATAAGTTTTTTTTTTCAAA]




>consensus_7490#0
ATCATATTATTATTATTTAATTATTCTACAAATAAAATGTAACGTAAACAATAGATTGTA
GTGTCAAGAAAACACAAACATAGAAATCATTCAAAAAGAGAAACAAGGGGAAAGATAAAA
AAAGTAGTTGACGATGAATTGTATATACTCAGTAATAATAGTTGTAAAGCAAGATGATTA
TTATAAAATCTACAGTAAAAATACAATACAAAATGATTGTAATAGTAATAATAATAATCA
ACTAAAGATTTATTTCCATGATTTATAATCTTTTGTTCTTTTCTTTTTTGATTATAATTC
AATTGACAATATAATAATTTGTAATGTTAGTAGTACTAGTAGTAGTAGTAGTAGTAGTAG
TAGTAGTAGGTAGTAGTGGTAGTAGTAGTAGTGGTAGTAGTAGTAGTCGGTAGTAGTAGT
AGTGGTAGTAGTAGTAGTTAGTAGTAGTAGTAATGGTAGTAGTAGTCGTTAGTAGTAGTG
GTAGTAGTAGTAGTAGTCATTAGTAGTAGTAGTAGTAGCGAAGAAGGTAGGGAAGAGAAA
AGAAAATTTTTTCCTAGCTAATAAGTTTTTTTTTTCAAA

consensusID : consensus_7490#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 379
fasta sequence

                              [TAGTCGGTAGTAGTAGTAGTGGTAGTAGTAGTAGTTAGTAGGTAGTAGTGGTAGTAGTAGTAGTGGTAGTAGTAGTAGTCGGTAGTAGTAGTAGTTGTAAAGCAAGATGATTATTATAAAATCTACAGTAAAAATACAATACAAAATGATTGTAATAGTAATAATAATAATCAACTAAAGATTTATTTCCATGATTTATAATCTTTTGTTCTTTTCTTTTTTGATTATAATTCAATTGACAATATAATAATTTGTAATGTTAGTAGTACTAGTAGTAGTAGTAGTAGTAGTAGTAGGTAGTAGTGGTAGTAGTAGTAGTAGTAGTAGTAGTAGTCGGTAGTAGTAGTAGTAGTAGTAGTAGTAGTTAGTAGTAGTAGTA]

[+] EMBL CD088400             [TAGTCGGTAGTAGTAGTAGTGGTAGTAGTAGTAGTTAGTAGGTAGTAGTGGTAGTAGTAGTAGTGGTAGTAGTAGTAGTCGGTAGTAGTAGTAGTTGTAAAGCAAGATGATTATTATAAAATCTACAGTAAAAATACAATACAAAATGATTGTAATAGTAATAATAATCATCAACTAAAGATTTATTTCCATGATTTATAATCTTTTGTTCTTTTCTTTTTTGATTATAATTCAATTGACAATATAATAATTTGTAATGTTAGTAGTACTAGTAGTAGTAGTAGTAGTAGTAGTAGGTAGTAGTGGTAGTAGTAGTAGTA                                                           ]
[+] EMBL CD088249             [  GTCGGTAGTAGTAGTAGTGGTAGTAGTAGTAGTTAGTAGGTAGTAGTGGTAGTAGTAGTAGTGGTAGTAGTAGTAGTCGGTAGTAGTAGTAGTTGTAAAGCAAGATGATTATTATAAAATCTACAGTAAAAATACAATACAAAATGATTGTAATAGTAATAATAATAATCAACTAAAGATTTATTTCCATGATTTATAATCTTTTGTTCTTTTCTTTTTTGATTATAATTCAATTGACAATATAATAATTTGTAATGTTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA GTAGTAGTAGTAGTA                                                                    ]
[+] EMBL CD088211             [                                                              GTGGTAGTAGTAGTAGTCGGTAGTAGTAGTAGTTGTAAAGCAAGATGATTATTATAAAATCTACAGTAAAAATACAATACAAAATGATTGTAATAGTAATAATAATAATCAACTAAAGATTTATTTCCATGATTTATAATCTTTTGTTCTTTTCTTTTTTGATTATAATTCAATTGACAATATAATAATTTGTAATGTTAGTAGTACTAGTAGTAGTAGTAGTAGTAGTAGTAGGTAGTAGTGGTAGTAGTAGTAGTGGTAGTAGTAGTAGTCGGTAGTAGTAGTAGTAGTAGTAGTAGTAGTTAGTAGTAGTAGTA]
[-] EMBL CD088231             [                                                                                                                                             CAAAATGATTGTAATAGTAATAATAATAATCAACTAAAGATTTATTTCCATGATTTATAATCTTTTGTTCTTTTCTTTTTTGATTATAATTCAATTGACAATATAATAATTTGTAATGTTAGTAGTACTAGTAGTAGTAG                                                                                                  ]




>consensus_7490#1
TAGTCGGTAGTAGTAGTAGTGGTAGTAGTAGTAGTTAGTAGGTAGTAGTGGTAGTAGTAG
TAGTGGTAGTAGTAGTAGTCGGTAGTAGTAGTAGTTGTAAAGCAAGATGATTATTATAAA
ATCTACAGTAAAAATACAATACAAAATGATTGTAATAGTAATAATAATAATCAACTAAAG
ATTTATTTCCATGATTTATAATCTTTTGTTCTTTTCTTTTTTGATTATAATTCAATTGAC
AATATAATAATTTGTAATGTTAGTAGTACTAGTAGTAGTAGTAGTAGTAGTAGTAGGTAG
TAGTGGTAGTAGTAGTAGTAGTAGTAGTAGTAGTCGGTAGTAGTAGTAGTAGTAGTAGTA
GTAGTTAGTAGTAGTAGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7490#0      ATCATATTATTATTATTTAATTATTCTACAAATAAAATGTAACGTAAACAATAGATTGTA 60
consensus_7490#1      ---------------------------------------------------TAGTCGGTA 9
                                                                         ***   ***

consensus_7490#0      GTGTCAAGAAAACACAAACATAGAAATCATTCAAAAAGAGAAACAAGGGGAAAGATAAAA 120
consensus_7490#1      GTAGTA-GTAGTGGTAGTAGTAGTAGTTAGTAGGTAGTAGTGGTAGTAGTAGTAGTGGTA 68
                      **   * * *     *    *** * * * *    *  **    *   * *    *   *

consensus_7490#0      AAAGTAGTTGACGATGAATTGTATATACTCAGTAATAATAGTTGTAAAGCAAGATGATTA 180
consensus_7490#1      GTAGTAGTAGTCGGT---------------AGTAGTAGTAGTTGTAAAGCAAGATGATTA 113
                        ****** * ** *               **** ** **********************

consensus_7490#0      TTATAAAATCTACAGTAAAAATACAATACAAAATGATTGTAATAGTAATAATAATAATCA 240
consensus_7490#1      TTATAAAATCTACAGTAAAAATACAATACAAAATGATTGTAATAGTAATAATAATAATCA 173
                      ************************************************************

consensus_7490#0      ACTAAAGATTTATTTCCATGATTTATAATCTTTTGTTCTTTTCTTTTTTGATTATAATTC 300
consensus_7490#1      ACTAAAGATTTATTTCCATGATTTATAATCTTTTGTTCTTTTCTTTTTTGATTATAATTC 233
                      ************************************************************

consensus_7490#0      AATTGACAATATAATAATTTGTAATGTTAGTAGTACTAGTAGTAGTAGTAGTAGTAGTAG 360
consensus_7490#1      AATTGACAATATAATAATTTGTAATGTTAGTAGTACTAGTAGTAGTAGTAGTAGTAGTAG 293
                      ************************************************************

consensus_7490#0      TAGTAGTAGGTAGTAGTGGTAGTAGTAGTAGTGGTAGTAGTAGTAGTCGGTAGTAGTAGT 420
consensus_7490#1      TAG------GTAGTAGTGGTAGTAGTAGTAGTAGTAGTAGTAGTAGTCGGTAGTAGTAGT 347
                      ***      *********************** ***************************

consensus_7490#0      AGTGGTAGTAGTAGTAGTTAGTAGTAGTAGTAATGGTAGTAGTAGTCGTTAGTAGTAGTG 480
consensus_7490#1      AGTAGTAGTAGTAGTAGTTAGTAGTAGTAGTA---------------------------- 379
                      *** ****************************                            

consensus_7490#0      GTAGTAGTAGTAGTAGTCATTAGTAGTAGTAGTAGTAGCGAAGAAGGTAGGGAAGAGAAA 540
consensus_7490#1      ------------------------------------------------------------
                                                                                  

consensus_7490#0      AGAAAATTTTTTCCTAGCTAATAAGTTTTTTTTTTCAAA 579
consensus_7490#1      ---------------------------------------