These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7491#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [AAAGCCAATAGGTAGGTGGTGAATGGGCTTTTGTGACTGGTGCATCATCAGGTCTTGGTGAAGCATATGCAGAAGAATTGGCCAAAGAGAGTCTCAATATCATGCTTATCAGTAATGATGAAGAACAACTGTCCTGCGTTGCCAATCGAATTGCAAATATCTATAATGTTCAAACAAGATTTGTGGTTGCAGATTTTACTAAAAATGATGTTTATGAAATAATCAAACCTGCTGTTGAACAATTATCCACAATTGCTTGTTTAGTGAATAATGTTGGTATGGGATTACCCATTGAGTTGTTTACTGGAGAAGTGAATTCACCAAATGAAGAATCAATTCAAAACATCATTCATTGTAATATTTTGTCTACAGTAACAATGACAAGTATCATTCTGCCGAAAATGTTAACACAGAAAGAACCTTATCCTGGTATTATCAATCTTGGATCTTATACAGGTTTCAAAGTATTTCCTTATGTTTCATTGTACGCTTCAACCAAAGCAGCTATTATTCATTTTTCTAGATGTCTAGCTGCAGAAATGTATCAAAAGAATTTCATTATACAAATTATGAATCCATTATTTGTATCAACAAATTTGACCC] [+] EMBL CD127901 [AAAGCCAATAGGTAGGTGGTGAATGGGCTTTTGTGACTGGTGCATCATCAGGTCTTGGTGAAGCATATGCAGAAGAATTGGCCAAAGAGAGTCTCAATATCATGCTTATCAGTAATGATGAAGAACAACTGTCCTGCGTTGCCAATCGAATTGCAAATATCTATAATGTTCAAACAAGATTTGTGGTTGCAGATTTTACTAAAAATGATGTTTATGAAATAATCAAACCTGCTGTTGAACAATTATCCACAATTGCTTGTTTAGTGAATAATGTTGGTATGGGATTACCCATTGAGTTGTTTACTGGAGAAGTGAATTCACCAAATGAAGAATCAATTCAAAACATCATTCATTGTAATATTTTGTCTACAGTAACAATGACAAGTATCATTCTGCCGAAAATGTTAACACAGAAAGAACCTTATCCTGGTATTATCAATCTTGGATCTTATACAGGTTTCAAAGTATTTCCTTATGTTTCATTGTACGCTTCAACCAAAGCAGCTATTATTCATTTTTCTAGATGTCTAGCTGCAGAAATGTATCAAAAGAATTTCATTATACAAATTATGAATCCATTATTTGTATCAACAAATTTGACCC] consensusID : consensus_7491#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 579 fasta sequence [TACCCGTTACGTTGTNTGGTGGAGAAATTAATTCACCGAATGAAGAATCAATTAGAAATATCATTCATTGTAATATTTTGTCTACAGTAACAATGACAAGTATAATTCTGCCGAAAATGTTAACACAGAAAGAACCTAATCCTGGTATCATAAACATTGCATCTTATTCAGGTTTAAAAGTGTTTCCTTATGCTTCATTGTACGCTTCAACCAAAGCAGCTATTATTCAATTTTCGGGATGTGTGGCTGCAGAGAAGTATAAGAAGAATGTTATCATACAAGCGATATGTCCATTATTTGTGTCGACAAATATGACCAATCTAATGAAAACCACATTTTTCATACCAACTGCTAAAGTATATGCTAAAAGTGCATTAGATATGTATGGTGTTGAACAACAAACTTCTGGTTATTTTCGGCATGAGTTAAAAGCATATCTTTACAGTTTGTTGCCAACATCAGTTTTTATA-AGAATTATAAGATTAGTAGCTAATTCTCACACTATAGAGAGTCTCTAGATACATTTAATCTAAATCTCTCAGAGTGTGCGCGAAAATCTCTAATAGCGTGGTGAGAATA] [-] EMBL CD165423 [TACCCGTTACGTTGTNTGGTGGAGAAATTAATTCACCGAATGAAGAATCAATTAGAAATATCATTCATTGTAATATTTTGTCTACAGTAACAATGACAAGTATAATTCTGCCGAAAATGTTAACACAGAAAGAACCTAATCCTGGTATCATAAACATTGCATCTTATTCAGGTTTAAAAGTGTTTCCTTATGCTTCATTGTACGCTTCAACCAAAGCAGCTATTATTCAATTTTCGGGATGTGTGGCTGCAGAGAAGTATAAGAAGAATGTTATCATACAAGCGATATGTCCATTATTTGTGTCGACAAATATGACCAATCTAATGAAAACCACATTTTTCATACCAACTGCTAAAGTATATGCTAAAAGTGCATTAGATATGTATGGTGTTGAACAACAAACTTCTGGTTATTTTCGGCATGAGTTAAAAGCATATCTTTACAGTTTGTTGCCAACATCAGTTTTTATA AGAATTATAAGATTAGTAGCTAAT ] [+] EMBL AW497741 [ ATTTTTCATACCAACTGCTAAAGTGTATGCTAAAAATGCATTAGATATGTATGGTGTTGAACAACAAACTTCTGGTTATTTTCGGCATGAGTTTAAAGCATATCTTTACAGTTTGTTGGCAACATCAGGTTTTATATAGAATTATTAGATTAGTAGCTAAATCTCACACTATAGAGAGTCTCTAGATACATTTAATCTAAATCTCTCAGAGTGTGCGCGAAAATCTCTAATAGCGTGGTGAGAATA] consensusID : consensus_7491#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 535 fasta sequence [AATGACAAGCATCATTCTGCCGAGAATGTTAACACAGAAAGAACCTAATCCTTGTATTATCAATATTGCATCATATTCAGCTTTAAGAGTAACACCTTATTTAACTGTATATTCATCAACAAAATCAGCTATTATACAATTTTCCAAATGTTTAGCTGCAGAAAAATATCAAAAAAATATTAACATACAAACACTTTGTCCATTAACTATTTATACAAGCATGACAAAGAATGAGAAACCATCATTCTTTAATCCTACAGCAAAACTGTACGCTAAATGTGCATTAGATATGTATGGTGTTGAACAACAATCAACAGGGTATATACATCATGAATTAAAAGCTTATTTATTTAATTTATTACCAACATTTCTATGGATATTCATAACTTATACTAGAGTGAAATCACGTAAGAAGAATCTATAATGAATAAGATAGATGGATAGATCTATCATATTCAACATACATTCAAAATGTGATTTCTTATAGTGAATATGAAAAACACACACAAAAAAAGGAACGTTTCTTTTTTTTAAA] [-] EMBL CD077317 [AATGACAAGCATCATTCTGCCGAGAATGTTAACACAGAAAGAACCTAATCCTTGTATTATCAATATTGCATCATATTCAGCTTTAAGAGTAACACCTTATTTAACTGTATATTCATCAACAAAATCAGCTATTATACAATTTTCCAAATGTTTAGCTGCAGAAAAATATCAAAAAAATATTAACATACAAACACTTTGTCCATTAACTATTTATACAAGCATGACAAAGAATGAGAAACCATCATTCTTTAATCCTACAGCAAAACTGTACGCTAAATGTGCATTAGATATGTATGGTGTTGAACAACAATCAACAGGGTATATACATCATGAATTAAAAGCTTATTTATTTAATTTATTACCAACATTTCTATGGATATTCATAACTTATACTAGAGTGAAATCACGTAAGAAGAATCTATAATGAATAAGATAGATGGATAGATCTATCATATTCAACATACATTCAAAATGTGATTTCTTATAGTGAATATGAAAAACACACACAAAAAAAGGAACGTTTCTTTTTTTTAAA] [-] EMBL CD077257 [ CCATTAACTATTTATACAAGCATGTCAAAGAATGAGAAGCCATCATTCTTTAATCTTACAGCAAAACTGTACGCTAAATGTGCATTAGATATGTATGGTGTTGAACAACAATCAACAGGGTATAGACATCATGAATTAAAAGCTTATTTATTTAATTTATTACCAACATTTTTATGGATATTCATAACTTATACTAGAGTGAAATCACGTAAGAAGAATCTATAATGAATAAGATAGATGGATAGATTTATCATATTCCACATACATTCAAAATGTGATTTGTTATAGTGAATATGAAAAACACACACAAAAAAAGGAACGTTTCTTTTTTTTAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7491#1 TACCCGTTACGTTGTNTGGTGGAGAAATTAATTCACCGAATGAAGAATCAATTAGAAATA 60 consensus_7491#2 ------------------------------------------------------------ consensus_7491#0 ---AAAGCCAATAGGTAGGTGGTGAATGGGCTTTTGTGACTGGTGCATCATCAGGTCTTG 57 consensus_7491#1 TCATTCATTGTAATATTTTGTCTACAGTAACAATGACAAGTATAATTCT-GCCGAAAATG 119 consensus_7491#2 -------------------------------AATGACAAGCATCATTCT-GCCGAGAATG 28 consensus_7491#0 GTGAAGCATATGCAGAAGAATTGGCCAAAGAGAGTCTCAATATCATGCTTATCAGTAATG 117 * * ** ** ** * **** consensus_7491#1 TTAACACAGAAAGAACCTAATCC-----TGGTATCATAAACATTGCATCTTATTCA---- 170 consensus_7491#2 TTAACACAGAAAGAACCTAATCC-----TTGTATTATCAATATTGCATCATATTCA---- 79 consensus_7491#0 ATGAAGAACAACTGTCCTGCGTTGCCAATCGAATTGCAAATATC-TATAATGTTCAAACA 176 * * * ** *** * * ** ** ** ** * **** consensus_7491#1 -GGTTTAAAAGTG-TTTCCTTATGCTTCATTGTACGCTT----CAACCAAAGCAGCTATT 224 consensus_7491#2 -GCTTTAAGAGTA-ACACCTTATTTAACTGTATATTCAT----CAACAAAATCAGCTATT 133 consensus_7491#0 AGATTTGTGGTTGCAGATTTTACTAAAAATGATGTTTATGAAATAATCAAACCTGCTGTT 236 * *** * *** * * ** *** * *** ** consensus_7491#1 ATTCAATTTTCGGGA--TGTGTGGCTGCAGAGAAGTATAAGAAGAATGTTATCATACAAG 282 consensus_7491#2 ATACAATTTTCCAAA--TGTTTAGCTGCAGAAAAATATCAAAAAAATATTAACATACAAA 191 consensus_7491#0 GAACAATTATCCACAATTGCTTGTTTAGTGAATAATGTTGGTATGGGATTACCCATTGAG 296 ***** ** * ** * * ** * * * * *** * * consensus_7491#1 CGATATGTCCATTATTTGTGTCGACAAATATGACCAATCTAATGAAAACCACATTTTTCA 342 consensus_7491#2 CACTTTGTCCATTAACTATTTATACAAGCATGACAAAGAATGAGAAACCATCATTCTTTA 251 consensus_7491#0 TTGTTTACTGGAGAAGTGAATTCACCAA-ATGAAGAATCAATTCAAAACATCATTCATTG 355 * * * * * ** * **** ** *** * **** * consensus_7491#1 TA--------CCAACTGCTAAAGTATATGCTAAAAGTGCATTAGATATGTATGGTGTTGA 394 consensus_7491#2 AT--------CCTACAGCAAAACTGTACGCTAAATGTGCATTAGATATGTATGGTGTTGA 303 consensus_7491#0 TAATATTTTGTCTACAGTAACAATGACAAGTATCATTCTGCCGAAAATGT-TAACACAGA 414 * ** * * * * ** * * **** * ** consensus_7491#1 ACAACAAACTTCTGGTTAT-TTTCGGCATGAGTTAAAAGCATATCTTTACAGTTTGTTGC 453 consensus_7491#2 ACAACAATCAACAGGGTAT-ATACATCATGAATTAAAAGCTTATTTATTTAATTTATTAC 362 consensus_7491#0 AAGAACCTTATCCTGGTATTATCAATCTTGGATCTTATACAGGTTT---CAAAGTATTTC 471 * * * * *** * * ** * * * * * * * ** * consensus_7491#1 CAACATCAGTTTTTATAAGAATTA-TAAGATTAGTAGCTAATTCTCACA--------CTA 504 consensus_7491#2 CAACATTTCTATGGATATTCATAACTTATACTAG-AGTGAAATCACGTAAGAAGAATCTA 421 consensus_7491#0 CT-TATGTTTCATTGTACGCTTCAACCAAAGCAGCTATTA-TTCATTTTTC-----TAGA 524 * ** * ** * * * * ** * ** * consensus_7491#1 TAGAGAGTCTC-TAGATACATTTAATCTAAATCTCTCAGAGTGTGCGCGAAA----ATCT 559 consensus_7491#2 TAATGAATAAGATAGATGGATA-GATCTATCATATTCAACATACATTCAAAATGTGATTT 480 consensus_7491#0 TGTCTAGCTGCAGAAATGTATCAAAAGAATTTCATTATACAAATTATGAATCCATTATTT 584 * * * ** ** * * * * ** * consensus_7491#1 CTAATAGCG--TGGTGAGAATA--------------------------------- 579 consensus_7491#2 CTTATAGTGAATATGAAAAACACACACAAAAAAAGGAACGTTTCTTTTTTTTAAA 535 consensus_7491#0 GTATCAACAAATTTGACCC------------------------------------ 603 * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||