These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7493#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 775 fasta sequence [TTATTTACAAATTAAGCCATTATTTAATCTTATGTGATTCAATAGTTTCTCATTTCTTTTTCAAAAAGTTTATTTCTTATCTGTACACAGCAGTTAGTGGTTGTAGTTTTTATATATTGAGTGTGGAAGCATATTTTTTAAATACTCTTGGATATCTAATATGTTATTTGAACAATGGTCAGTCTTGAATATAGTGGTCTTGAGTGCTGTTAAAGGTATGAGGGCAGTTATTACTTCCCGGTTGCCCACACCGTGGAAGGGTTTTTCTAGAGGTACCTTAAAAGGAAATTGGGTTAGAAGTGATCTCAATGACCTGAGAGCGTGACCACAGTGCTCAAGGGACAACTGCTTGAGGTCGGTCACACACGATCTTTTTGTGGGTAGTTTCTGTGTTAGCTCCGTACTTGTTGGGATCTTACCGCCGGAGACAGATATCCATGGAATAAGGCGAGGTGTGCATTTTTA-GGTCGACCTTTTCTAACCCCACCCCTCCTTGTGGGAAGGCAGCATCGCTGTCATGCTGGTTGTCTGAAGGAAACACCTTACTGCTATCACACCTCTGTACAGTCAGCAGTACGACTTCGCCTTCGGACCTTGGGTTTGCTGCTTTTAGTCTCACCGCTCTTCAACCGACCTGTCTGGCATGGTAGGACCTCGAGGAACGATTGTTCCAGCCAGCATAGCTCGACTGCTTCATCACGATAGGCAAGCCCGATCACCACGTCAAGGTAGCAGCAACGGTCGGCCAATCTCAGAAGAGGGATTTGCTCACAAT] [+] EMBL CD086184 [TTATTTACAAATTAAGCCATTATTTAATCTTATGTGATTCAATAGTTTCTCATTTCTTTTTCAAAAAGTTTATTTCTTATCTGTACACAGCAGTTAGTGGTTGTAGTTTTTATATATTGAGTGTGGAAGCATATTTTTTAAATACTCTTGGATATCTAATATGTTATTTGAACAATGGTCAGTCTTGAATATAGTGGTCTTGAGTGCTGTTAAAGGTATGAGGGCAGTTATTACTTCCCGGTTGCCCACACCGTGGAAGGGTTTTTCTAGAGGTACCTTAAAAGGAAATTGGGTTAGAAGTGATCTCAATGACCTGAGAGCGTGACCACAGTGCTCAAGGGACAACTGCTTGAGGTCGGTCACACACGATCTTTTTGTGGGTAGTTTCTGTGTTAGCTCCGTACTTGTTGGGATCTTACCGCCGGAGACAGATATCCATGGAATAAGGCGAGGTGTGCATTTTTA GGTCGACCTTTTCTAACCCCACCCCTCCTTGTGGGAAGGCAGCA ] [+] EMBL CD068199 [ aaaaaaacCTTA CGCCGGAGACGGATATCCGTGGGATAAGGCGAGGTGTGCATTTTTACGGTCGACCTTTTCTAACCCCAGCCCTCCTTGTGGGAAGGCAGCATCGCTGTCATGCTGGTTGTCTGAAGGAAACACCTTACTGCTATCACACCTCTGTACAGTCAGCAGTACGACTTCGCCTTCGGACCTTGGGTTTGCTGCTTTTAGTCTCACCGCTCTTCAACCGACCTGTCTGGCATGGTAGGACCTCGAGGAACGATTGTTCCAGCCAGCATAGCTCGACTGCTTCATCACGATAGGCAAGCCCGATCACCACGTCAAGGTAGCAGCAACGGTCGGCCAATCTCAGAAGAGGGATTTGCTCACAAT] consensusID : consensus_7493#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 286 fasta sequence [CCCCAAATACTCTTGAGCTCACCGTAATTACCATAATCACCGCCATAGGGGGCAGGGAAGGCCTCATCGAAGCCACCTCCACAATTGCCGCCGCCACAGTCACCACCAGTACAGCCTCCACCATATCCACTATCGCCATAACCGCTATCACAATCGCTACCATAGCAACCGCCACCGTACCCACCCGAATAGTCATGTGATGTGGTGTGGGCGGTGGCGTAACCAATGGCTACTAAGAAGACGAGTGTGAGTGACTGTTTCATTTCTCAAATTGTTGGTGTTGTTG] [+] EMBL CD128791 [CCCCAAATACTCTTGAGCTCACCGTAATTACCATAATCACCGCCATAGGGGGCAGGGAAGGCCTCATCGAAGCCACCTCCACAATTGCCGCCGCCACAGTCACCACCAGTACAGCCTCCACCATATCCACTATCGCCATAACCGCTATCACAATCGCTACCATAGCAACCGCCACCGTACCCACCCGAATAGTCATGTGATGTGGTGTGGGCGGTGGCGTAACCAATGGCTACTAAGAAGACGAGTGTGAGTGACTGTTTCATTTCTCAAATTGTTGGTGTTGTTG] consensusID : consensus_7493#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 238 fasta sequence [CATATCAGGGGGGGGAGTGCAACAACACCAACAATTTGAAAAAAGAAACAGACACTCACACTCGTCTTCTTAGTAGCCATTGGATACGCCACCGCCTACACCACATGACATGACTATTCGGGTGGTTACGGTGGCGGCTGCTATGGTAGCGATTGTGATAGCGGTTATGGCGATAGTGGATATGGCGGAGGCTGCACTGATGGCGACTGTGGCGGCGTCTATGGTGGAGGATGCAGTG] [+] EMBL CD129775 [CATATCAGGGGGGGGAGTGCAACAACACCAACAATTTGAAAAAAGAAACAGACACTCACACTCGTCTTCTTAGTAGCCATTGGATACGCCACCGCCTACACCACATGACATGACTATTCGGGTGGTTACGGTGGCGGCTGCTATGGTAGCGATTGTGATAGCGGTTATGGCGATAGTGGATATGGCGGAGGCTGCACTGATGGCGACTGTGGCGGCGTCTATGGTGGAGGATGCAGTG] consensusID : consensus_7493#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 117 fasta sequence [ATAGCGGTTATGGCGATCAGTGGATATGGTGGGCGGCTGTACTGGTGGTGACTGTGGCGGCAGCTATGGTGGTGGCTTCGATGAGGCCTTCCCTGCCCCCTATGGCGGTGATTCTTG] [+] EMBL CD167595 [ATAGCGGTTATGGCGATCAGTGGATATGGTGGGCGGCTGTACTGGTGGTGACTGTGGCGGCAGCTATGGTGGTGGCTTCGATGAGGCCTTCCCTGCCCCCTATGGCGGTGATTCTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7493#2 ------------------------------------------------------------ consensus_7493#3 ------------------------------------------------------------ consensus_7493#1 ------------------------------------------------------------ consensus_7493#0 TTATTTACAAATTAAGCCATTATTTAATCTTATGTGATTCAATAGTTTCTCATTTCTTTT 60 consensus_7493#2 ----------------------------------------------------------CA 2 consensus_7493#3 ------------------------------------------------------------ consensus_7493#1 -----------------------------------------------CCCCAAATACTCT 13 consensus_7493#0 TCAAAAAGTTTATTTCTTATCTGTACACAGCAGTTAGTGGTTGTAGTTTTTATATATTGA 120 consensus_7493#2 TATCAGGGGGGGGAGTGCAACAACACCAACAATTTGAAAAAAGAAACAGACACTCACACT 62 consensus_7493#3 ------------------------------------------------------------ consensus_7493#1 TGAGCTCACCGTAATTACCATAATCACCGCCATAGGGGGCAGGGAAGGCCTCATCGAAGC 73 consensus_7493#0 GTGTGGAAGCATATTTTTTAAATACTCTTGGATATCTAATATGTTATTTGAACAATGGTC 180 consensus_7493#2 CGTCTTCTTAGTAGCCATTGGATACGCCACCGCCTACACCACAT--GACATGACTATTCG 120 consensus_7493#3 -------------------------------------ATAGCG---GTTATGGCGATC-- 18 consensus_7493#1 CACCTCCACAATTGCCGCCGCCACAGTCACCACCAGTACAGCCTCCACCATATCCACTAT 133 consensus_7493#0 AGTCTTGAATATAGTGGTCTTGAGTGCTGTTAAAGGTATGAGGGCAGTTATTACTTCCCG 240 * ** * consensus_7493#2 GGTGGTTACGGTG-G---CGGCTGCTATGGTAGCGATTGTGATAGCGGTTA------TGG 170 consensus_7493#3 AGTGGATATGGTG-GG--CGGCTGTACTGGTGGTGACTGTGGCGGCAGCTA------TGG 69 consensus_7493#1 CGCCATAACCGCT-ATCACAATCGCTACCATAGCAACCGCCACCGTACCCACCCGAATAG 192 consensus_7493#0 GTTGCCCACACCGTGGAAGGGTTTTTCTAGAGGTACCTTAAAAGGAAATTGGGTTAGAAG 300 * * * * consensus_7493#2 CGATA----GTGGATATGGCG-GAGGCTGCACTGAT-----GGCGACTG--TGGCGGCGT 218 consensus_7493#3 TG-------GTGGCTTCGATG-AGGCCTTCCCTGC--------CCCCTA--TGGCGGTGA 111 consensus_7493#1 TCATGTGATGTGGTGTGGGCG-GTGGCGTAACCAAT-----GGCTACTA--AGAAGACGA 244 consensus_7493#0 TGATCTCA-ATGACCTGAGAGCGTGACCACAGTGCTCAAGGGACAACTGCTTGAGGTCGG 359 ** * * * * ** * * * consensus_7493#2 CTATGGTGGAGGATGCAGTG---------------------------------------- 238 consensus_7493#3 TTCTTG------------------------------------------------------ 117 consensus_7493#1 GTGTGAGTGACTGTTTCATTTCTCAAATTGTTGGTGTTGTTG------------------ 286 consensus_7493#0 TCACACACGATCTTTTTGTGGGTAGTTTCTGTGTTAGCTCCGTACTTGTTGGGATCTTAC 419 consensus_7493#2 ------------------------------------------------------------ consensus_7493#3 ------------------------------------------------------------ consensus_7493#1 ------------------------------------------------------------ consensus_7493#0 CGCCGGAGACAGATATCCATGGAATAAGGCGAGGTGTGCATTTTTAGGTCGACCTTTTCT 479 consensus_7493#2 ------------------------------------------------------------ consensus_7493#3 ------------------------------------------------------------ consensus_7493#1 ------------------------------------------------------------ consensus_7493#0 AACCCCACCCCTCCTTGTGGGAAGGCAGCATCGCTGTCATGCTGGTTGTCTGAAGGAAAC 539 consensus_7493#2 ------------------------------------------------------------ consensus_7493#3 ------------------------------------------------------------ consensus_7493#1 ------------------------------------------------------------ consensus_7493#0 ACCTTACTGCTATCACACCTCTGTACAGTCAGCAGTACGACTTCGCCTTCGGACCTTGGG 599 consensus_7493#2 ------------------------------------------------------------ consensus_7493#3 ------------------------------------------------------------ consensus_7493#1 ------------------------------------------------------------ consensus_7493#0 TTTGCTGCTTTTAGTCTCACCGCTCTTCAACCGACCTGTCTGGCATGGTAGGACCTCGAG 659 consensus_7493#2 ------------------------------------------------------------ consensus_7493#3 ------------------------------------------------------------ consensus_7493#1 ------------------------------------------------------------ consensus_7493#0 GAACGATTGTTCCAGCCAGCATAGCTCGACTGCTTCATCACGATAGGCAAGCCCGATCAC 719 consensus_7493#2 -------------------------------------------------------- consensus_7493#3 -------------------------------------------------------- consensus_7493#1 -------------------------------------------------------- consensus_7493#0 CACGTCAAGGTAGCAGCAACGGTCGGCCAATCTCAGAAGAGGGATTTGCTCACAAT 775 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||