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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7495#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1196 fasta sequence
[GAGCCATATTCGGCCGAGGTCTATGTGGTCATGTTGGTTGTGGTCGTTATGGTCAAAAACATGCACAGGTGCATTTTGAAGAAACAGGACATACATTCGCCTTAGAGCTCGGCAAAACATTGGTCTGGGATTACGCTGATGATGCATATGTTCATCGGCTAGCTGTTAATCACGAGGATGGAAAATTAGTCCAGCTTGGGCCCAGTAGTGAGACTGGTAACAAAAAGCTAGACATAATTAGCATGGAATTCAGTGCTATCTTAACAAGTCAACTGGAATCACAACGTGCATACTTTGAGTCCCAACTGGATTTAATAACTACTCAGTCAAATATGCGTCTCGAAGAAATGGAATCCAGTGTCGAATCGGCCTTATCCGCTGCGCAAACAGCCGAAAAGAAACTCTCTGAAGTCATAAAAGAGAACCTAGTCATCAGTCGTAAATTGCGACAAGCCACATCATTAGCTCAACGTTTACAAAGGGATTTGGAAGAAGAACGTGCTTTAAATCAAAGTTTACTTATAAATGAGAAAACCTGGCGCGAAAGAACAGAACAAGCGGAATCGGAAGCGAAAACAGCTCGTGCAGAATGTAGAGAATTACTATTAAACTTGGAATTGCGAGATAAATTAAATGAATTAAACACAAGTAAAGAGCTGACAAAAGATGAACTCGAAACATGTGAAATCTCTTTACAACCCGGCAGTTCACAAAAAATAAATCGAAGACGACGTAAACGCTAAAATCCTTTCTACAGAGATGTCTACTAAAGAAAAANAAGCTGTCAGATGAATGATATAGTCTTATCACATTTGACAGTATTATATATCTTCGCTTTCTGTCATCTANCTTGTCAGTTACTCAATCATCGATAAAAAAAGNTGTATATGTATATATATATATATAGTTTGGCAAAAGTATTGTCTNTATTNTATAAAAGATATATCTAANTCTACTTTCTGGTGGTTATTCAAAATGCACGACCTTCTCTGATGTTTTGATCTTTGTTCAAACTATAAATCCTGATGTTTATGAATCTTATGATTCTATTAACTCAAATCTAAAACCATAGANNTAATAATGATTTGCGGTCTGATCGATCATGTGACGATAAGGTTTGCTGATATGGATTTCATTNGNGTTGTAGGGACTGCATACAAANTTGCTCTACTACCTGACTATATGACTATTTATAA]
[+] EMBL CD081779 [GAGCCATATTCGGCCGAGGTCTATGTGGTCATGTTGGTTGTGGTCGTTATGGTCAAAAACATGCACAGGTGCATTTTGAAGAAACAGGACATACATTCGCCTTAGAGCTCGGCAAAACATTGGTCTGGGATTACGCTGATGATGCATATGTTCATCGGCTAGCTGTTAATCACGAGGATGGAAAATTAGTCCAGCTTGGGCCCAGTAGTGAGACTGGTAACAAAAAGCTAGACATAATTAGCATGGAATTCAGTGCTATCTTAACAAGTCAACTGGAATCACAACGTGCATACTTTGAGTCCCAACTGGATTTAATAACTACTCAGTCAAATATGCGTCTCGAAGAAATGGAATCCAGTGTCGAATCGGCCTTATCCGCTGCGCAAACAGCCGAAAAGAAACTCTCTGAAGTCATAAAAGAGAACCTAGTCATCAGTCGTAAATTGCGACAAGCCACATCATTAGCTCAACGTTTACAAAGGGATTTGGAAGAAGAACGTGCTTTAAATCAAAGTTTACTTATAAATGAGAAAACCTGGCGCGAAAGAACAGAACAAGCGGAATCGGAAGCGAAAACAGCTCGTGCAGAATGTAGAGAATTACTATTAAACTTGGAATTGCGAGATAAATTAAATGAATTAAACACAAGTAAAGAGCTGACAAAAGATGAACTCGAAACATGTGAAATCTCTTTACAACCCGGCAGTTCACAAAAAATAAATCGAAGACGACGTAAACGCTAAAATCCTTTCTACAGAGATGTCTACTAAAGAAAAANAAGCTGTCAGATGAATGATATAGTCTTATCACATTTGACAGTATTATATATCTTCGCTTTCTGTCATCTANCTTGTCAGTTACTCAATCATCGATAAAAAAAGNTGTATATGTATATATATATATATAGTTTGGCAAAAGTATTGTCTNTATTNTATAAAAGATATATCTAANTCTACTTTCTGGTGGTTATTCAAAATGCACGACCTTCTCTGATGTTTTGATCTTTGTTCAAACTATAAATCCTGATGTTTATGAATCTTATGATTCTATTAACTCAAATCTAAAACCATAGANNTAATAATGATTTGCGGTCTGATCGATCATGTGACGATAAGGTTTGCTGATATGGATTTCATTNGNGTTGTAGGGACTGCATACAAANTTGCTCTACTACCTGACTATATGACTATTTATAA]
[-] EMBL CD186534 [ TAGAGCTCGGCAAAACATTGGTCTGGGATTACGCTGATGATGCATATGTTCATCGGCTAGCTGTTAATCACGAGGATGGAAAATTAGTCCAGCTTGGGCCCAGTAGTGAGACTGGTAACAAAAAGCTAGACATAATTAGCATGGAATTCAGTGCTATCTTAACAAGTCAACTGGAATCACAACGTGCATACTTTGAGTCCCAACTGGATTTAATAACTACTCAGTCAAATATGCGTCTCGAAGAAATGGAATCCAGTGTCGAATCGGCCTTATCCGCTGCGCAAACAGCCGAAAAGAAACTCTCTGAAGTCATAAAAGAGAACCTAGTCATCAGTCGTAAATTGCGACAAGCCACATCATTAGCTCAACGTTTACAAAGGGATTTGGAAGAAGAACGTGCTTTAAATCAAAGTTTACTTATAAATGAGAAAACCTGGCGCGAAAGAACAGAAC ]
[-] EMBL CD187304 [ ACGTGCATACTTTGAGTCCCAACTGGATTTAATAACTACTCAGTCATATATGCGTCTCGAAGAAATGGAATCCAGTGTCGAATCGGCCTTATCCGCTGCGCAAACAGCCGAAAAGAAACCCTCTGAAGTCATAGAAGAGAACCTAGTCATCAGTCGTAAATTGCGACAAGCCACATCATTAGCTCAACGTTTACAAAGGGATTTGGAAGAAGAACGTGCTTTAAATCAAAGTTTACTTATAAATGAGAAAACCTGGCGCGAAAGAACAGAACAAGCGGAATCGGAAGCGAAAACAGCTCGTGCAGAATGTAGAGAATTACTATTAAACTTGGAATTGCGAGATAAATTAAATGAATTAAACACAAGTAAAGAGCTGACAAAAGATGAACTCGAAACATGTGAAATCTCTTTACAACCAGGCAGTTCACAAAAAATAAATCGAAGACGACGTAAACGCTAAAA ]
consensusID : consensus_7495#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 816 fasta sequence
[CCACATCATAGCTCAACGTTT-CAAAGGGA-TTGGAAGAAGAACGTGCTTTAAATCAAAGTTTACTTATAAATGAGAAAACCTGGCGCGAAAGAACAGAACAAGCGGAATCGGAAGCGAAAACAGCTCGTGCAGAATGTAGAGAATTACTATTAAACTTGGAATTGCGAGATAAATTAAATGAATTAAACACAAGTAAAGAGCTGACAAAAGATGAACTCGAAACATGTGAAATCTCTTTACAACCCGGCAGTTCACAAAAAATAAATCGAAGACGACGTAAACGCTAAAATCCTTTCTACAGAGATGTCTACTAAAGAAAAAAAAGCTGTCAGATGAATGATATAGTCTTATCACATTTGACAGTATTATATATCTTCGCTTTCTGTCATCTACTTGTCAGTTTACTCAATCATCGATAAAAAAAAGTTGTATATG--TATATATATATATATAGTTTGTCAAAAGTATTGTCTTTATTTTATTAAAGATTATATCTAATTCTACTTTCTGTTGTTTTATTCAAAATTGCACGACCTTTCTCTGCATGTATTTGATCTTTGTTTCAACTTAATAAATCTTGATTGTTTTATGAATCTTTATGATTTCTATTAAACTTCAAAATCTAAAAAAACCATAAGATTAAATTAAAATAGATTTTGCGGATCATGTATCGAATCAGTGTTGTACGAATAAAGTGTTTTTGCTGTATATTGTGATTTTTCATTTGGTGTATTGTTAGTGTGAACTGTCGATAACAGAAGTTATGCATCTAAACATACACTGAGCTTATCAATGACTAATTTTGAATAAAATACAAC]
[-] EMBL CD075510 [CCACATCATAGCTCAACGTTT CAAAGGGA TTGGAAGAAGAACGTGCTTTAAATCAAAGTTTACTTATAAATGAGAAAACCTGGCGCGAAAGAACAGAACAAGCGGAATCGGAAGCGAAAACAGCTCGTGCAGAATGTAGAGAATTACTATTAAACTTGGAATTGCGAGATAAATTAAATGAATTAAACACAAGTAAAGAGCTGACAAAAGATGAACTCGAAACATGTGAAATCTCTTTACAACCCGGCAGTTCACAAAAAATAAATCGAAGACGACGTAAACGCTAAAATCCTTTCTACAGAGATGTCTACTAAAGAAAAAAAAGCTGTCAGATGAATGATATAGTCTTATCACATTTGACAGTATTATATATCTTCGCTTTCTGTCATCTACTTGTCAGTTTACTCAATCATCGATAAAAAAAAGTTGTATATG TATATATATATATATAGTTTGTCAAAAGTATTGTCTTTATTTTATTAAAGATTATATCTAATTCTACTTTCTGTTGTTTTATTCAAAATTGCACGACCTTTCTCTGCATGTATTTGATCTTTGTTTCAACTTAATAAATCTTGATTGTTTTATGAATCTTTATGATTTCTATTAAACTTCAAAATCTAAAAAAACCATAAGATTAAATTAAAATAGATTTTGCGGATCATGTATCGAATCAGTGTTGTACGAATAAAGTGTTTTTGCTGTATATTGTGATTTTTCATTTGGTGTATTGTTAGTGTGAACTGTCGATAACAGAAGTTATGCATCTAAACATACACTGAGCTTATCAATGACTAATTTTGAATAAAATACAAC]
[-] EMBL CD076951 [ catTAGCTCAACGTTTACAAAGGGATTTGGAAGAAGAACGTGCTTTAAATCAAAGTTTACTTATAAATGAGAAAACCTGGCGCGAAAGAACAGAACAAGCGGAATCGGAAGCGAAAACAGCTCGTGCAGAATGTAGAGAATTACTATTAAACTTGGAATTGCGAGATAAATTAAATGAATTAAACACAAGTAAAGAGCTGACAAAAGATGAACTCGAAACATGTGAAATCTCTTTACAACCCGGCAGTTCACAAAAAATAAATCGAAGACGACGTAAACGCTAAAATCCTTTCTACAGAGATGTCTACTAAAGAAAAAAAAGCTGTCAGATGAATGATATAGTCTTATCACATTTGACAGTATTATATATCTTCGCTTTCTGTCATCTACTTGTCAGTTTACTCAATCATCGATAAAAAAAAGTTGTATATGTATATATATATATATATAGTTTGTCAAAAGTATTGTCTTTATTTTATTAAAGATTATATCTAATTCTACTTTCTGTTGTTTTATTCAAAATTGCACGACCTTTCTCTGCATGTATTTGATCTTTGTTTCAACTTAATAAATCTTGATTGTTTTATGAATCTTTATGATTTCTATTAAACTTCAAAATCTAAAAAAACCATAAGATTAAATTAAAATAGATTTTGCGGATCATGTATCGAATCAGTGTTGTACGAATAAAGTGT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7495#0 GAGCCATATTCGGCCGAGGTCTATGTGGTCATGTTGGTTGTGGTCGTTATGGTCAAAAAC 60
consensus_7495#1 ------------------------------------------------------------
consensus_7495#0 ATGCACAGGTGCATTTTGAAGAAACAGGACATACATTCGCCTTAGAGCTCGGCAAAACAT 120
consensus_7495#1 ------------------------------------------------------------
consensus_7495#0 TGGTCTGGGATTACGCTGATGATGCATATGTTCATCGGCTAGCTGTTAATCACGAGGATG 180
consensus_7495#1 ------------------------------------------------------------
consensus_7495#0 GAAAATTAGTCCAGCTTGGGCCCAGTAGTGAGACTGGTAACAAAAAGCTAGACATAATTA 240
consensus_7495#1 ------------------------------------------------------------
consensus_7495#0 GCATGGAATTCAGTGCTATCTTAACAAGTCAACTGGAATCACAACGTGCATACTTTGAGT 300
consensus_7495#1 ------------------------------------------------------------
consensus_7495#0 CCCAACTGGATTTAATAACTACTCAGTCAAATATGCGTCTCGAAGAAATGGAATCCAGTG 360
consensus_7495#1 ------------------------------------------------------------
consensus_7495#0 TCGAATCGGCCTTATCCGCTGCGCAAACAGCCGAAAAGAAACTCTCTGAAGTCATAAAAG 420
consensus_7495#1 ------------------------------------------------------------
consensus_7495#0 AGAACCTAGTCATCAGTCGTAAATTGCGACAAGCCACATCATTAGCTCAACGTTTACAAA 480
consensus_7495#1 ---------------------------------CCACATCAT-AGCTCAACGTTT-CAAA 25
********* ************ ****
consensus_7495#0 GGGATTTGGAAGAAGAACGTGCTTTAAATCAAAGTTTACTTATAAATGAGAAAACCTGGC 540
consensus_7495#1 GGGATT-GGAAGAAGAACGTGCTTTAAATCAAAGTTTACTTATAAATGAGAAAACCTGGC 84
****** *****************************************************
consensus_7495#0 GCGAAAGAACAGAACAAGCGGAATCGGAAGCGAAAACAGCTCGTGCAGAATGTAGAGAAT 600
consensus_7495#1 GCGAAAGAACAGAACAAGCGGAATCGGAAGCGAAAACAGCTCGTGCAGAATGTAGAGAAT 144
************************************************************
consensus_7495#0 TACTATTAAACTTGGAATTGCGAGATAAATTAAATGAATTAAACACAAGTAAAGAGCTGA 660
consensus_7495#1 TACTATTAAACTTGGAATTGCGAGATAAATTAAATGAATTAAACACAAGTAAAGAGCTGA 204
************************************************************
consensus_7495#0 CAAAAGATGAACTCGAAACATGTGAAATCTCTTTACAACCCGGCAGTTCACAAAAAATAA 720
consensus_7495#1 CAAAAGATGAACTCGAAACATGTGAAATCTCTTTACAACCCGGCAGTTCACAAAAAATAA 264
************************************************************
consensus_7495#0 ATCGAAGACGACGTAAACGCTAAAATCCTTTCTACAGAGATGTCTACTAAAGAAAAANAA 780
consensus_7495#1 ATCGAAGACGACGTAAACGCTAAAATCCTTTCTACAGAGATGTCTACTAAAGAAAAAAAA 324
********************************************************* **
consensus_7495#0 GCTGTCAGATGAATGATATAGTCTTATCACATTTGACAGTATTATATATCTTCGCTTTCT 840
consensus_7495#1 GCTGTCAGATGAATGATATAGTCTTATCACATTTGACAGTATTATATATCTTCGCTTTCT 384
************************************************************
consensus_7495#0 GTCATCTANCTTGTCAGTT-ACTCAATCATCGATAAAAAAA-GNTGTATATGTATATATA 898
consensus_7495#1 GTCATCTAC-TTGTCAGTTTACTCAATCATCGATAAAAAAAAGTTGTATATGTATATATA 443
******** ********* ********************* * ****************
consensus_7495#0 TATATATAGTTTGGCAAAAGTATTGTCTNTATTNTATAAAAGAT-ATATCTAANTCTACT 957
consensus_7495#1 TATATATAGTTTGTCAAAAGTATTGTCTTTATTTTATTAAAGATTATATCTAATTCTACT 503
************* ************** **** *** ****** ******** ******
consensus_7495#0 TTCTGGTGGTT-ATTCAAAAT-GCACGACCTT-CTCTG-ATGT-TTTGATCTTTGTTCAA 1012
consensus_7495#1 TTCTGTTGTTTTATTCAAAATTGCACGACCTTTCTCTGCATGTATTTGATCTTTGTTTCA 563
***** ** ** ********* ********** ***** **** ************* *
consensus_7495#0 ACT--ATAAATCCTGATG--TTTATGAATCTT-ATGATT-CTATTAACTC---AAATCTA 1063
consensus_7495#1 ACTTAATAAATCTTGATTGTTTTATGAATCTTTATGATTTCTATTAAACTTCAAAATCTA 623
*** ******* **** ************ ****** ******* *******
consensus_7495#0 AAA---CCATAGANNTAATAATGATTTGCGGTCTGATCGATCATGTGACGA-TAAGGTTT 1119
consensus_7495#1 AAAAAACCATAAGATTAA-ATTAAAATA-GATTTTGCGGATCATGTATCGAATCAGTGTT 681
*** ***** *** * * * * * * * ******** *** * ** **
consensus_7495#0 GCTGATATGGATTTCATTNGNGTTGTAGGGACTGCATACAAANTTGCTCTACTACCTGAC 1179
consensus_7495#1 GTACGAATAAAGT--GTTTTTGCTGTATATTGTGATTTTTCATTTGGTGTATTGTTAGTG 739
* ** * * ** * **** ** * * *** * ** * *
consensus_7495#0 TATATGACTATTTATAA------------------------------------------- 1196
consensus_7495#1 TGAACTGTCGATAACAGAAGTTATGCATCTAAACATACACTGAGCTTATCAATGACTAAT 799
* * * * *
consensus_7495#0 -----------------
consensus_7495#1 TTTGAATAAAATACAAC 816
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||