|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7496#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 737 fasta sequence
[CAGAGAAAGAAGATGTAACAAATAATGAAATATTAGGTGTTATACGACAACTCAAATTACCTACTATATTTGAAGCTTTGGGTAAACATGTGAATCCTGAAGCTTTTGCTACAATGACCAAAAAAAGAAAACTACATGATCACATTATAGCGCGTCGTGCAGCTCGTATTGAGAGTATCTCATCTGAAAATTCCTCTCTTGAATCAATGAAGAAGGTTTGTGTCAATGCGATGAAACGATACCTTCAAACTCGTCCGAATGCATCTTGGGAATCTATTCGACGTGCAAAAGATCTAAGAGATGCACACTTTTCATTGCCTGTTCATCAGATTTTTGATAATTCAGCAGAGAAAGAAGATGTAACAAATAATGAAATATTAGGTGTTATACGACAACTCAAATTACCTACTATATTTGAAGCTTTGGGTAAACATGTGAATCCTGAAGCTTTTGCTACAATGACCAAAAAAAGAAAACTACATGATCACATTATAGCGCGTCGTGCAGCTCAGCGAGCGGTCGGTCAAACCAACAATGTACTGAAAAATTTAGTAGAAAGAAAGGTCTCATTAACTGATCAATTAGGTGCATGTAATGCTAATGATGAAATGTCGGATAATTTGGAAAATATTGACTTCTTTGTACCATATTCACGTGGTGATGAAGCAACAGAGAATGGATTGTCAATTACTGGAACANAAAGTCAATTTTGTTTAGATGCAGCAGCAGCTTCATTA]
[-] EMBL CD131437 [CAGAGAAAGAAGATGTAACAAATAATGAAATATTAGGTGTTATACGACAACTCAAATTACCTACTATATTTGAAGCTTTGGGTAAACATGTGAATCCTGAAGCTTTTGCTACAATGACCAAAAAAAGAAAACTACATGATCACATTATAGCGCGTCGTGCAGCTCGTATTGAGAGTATCTCATCTGAAAATTCCTCTCTTGAATCAATGAAGAAGGTTTGTGTCAATGCGATGAAACGATACCTTCAAACTCGTCCGAATGCATCTTGGGAATCTATTCGACGTGCAAAAGATCTAAGAGATGCACACTTTTCATTGCCTGTTCATCAGATTTTTGATAATTCAGCAGAGAAAGAAGATGTAACAAATAATGAAATATTAGGTGTTATACGACAACTCAAATTACCTACTATATTTGAAGCTTTGGGTAAACATGTGAATCCTGAAGCTTTTGCT ]
[+] EMBL CD191860 [ ATTCTTCTCTTGAATCAATGAAGAAGGTTTGTGTCAATGCGATGAAACGATACCTTCAAACTCGTCCGAATGCATCTTGGGAATCTATTCGACGTGCAAAAGATCTAAGAGATGCACACTTTTCATTGCCTGATCATCAGATTTTTGATAATTCAGCAGAGAAAGAAGATGTAACAAATAATGAAATATTAGGTGTTATACGACAACTCAAATTACCTACTATATTTGAAGCTTTGGGTAAACATGTGAATCCTGAAGCTTTTGCTACAATGACCAAAAAAAGAAAACTACATGATCACATTATAGCGCGTCGTGCAGCTCAGCGAGCGGTCGGTCAAACCAACAATGTACTGAAAAATTTAGTAGAAAGAAAGGTCTCATTAACTGATCAATTAGGTGCATGTAATGCTAATGATGAAATGTCGGATAATTTGGAAAATATTGACTTCTTTGTACCATATTCACGTGGTGATGAAGCAACAGAGAATGGATTGTCAATTACTGGAACANAAAGTCAATTTTGTTTAGATGCAGCAGCAGCTTCATTA]
consensusID : consensus_7496#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 658 fasta sequence
[CTTTTTTTGGTCATTGTAGCAAAAGCTTCGGGATTCACATTATAGCGCGTCGTGCAGCTCAGCGAGCGGTCGGTCAAACCAACAATGTACNTGAAAAATTTAGTAGAAAGAAAGGTCTCATTAACTGATCAATTAGGTGCATGTAATGCTAATGATGAAATGTCGGATAATTTGGAAAATATTGACTTCTTTGTACCATATTCACGTGGTGATGAAGCAACAGAGAATGGATTGTCAATTACTGGAACAAAAAGTCAATTTTGTTTAGATGCAGCAGCAGCTTCATTAGATTTACCAAATGATGAATCACAACAAGTCCATGGTGGAGTTGCAGGATCACATAGTCGAAAGCTTGTTTGGGATCGTAAACGCAAACGATTTACTGGAATGGATGCTGCCCAAGGTAAAGCAAATATGAAACGTATTAAAACTGAAAGTGGTGTATGGATTCCTGCATCATACAAAACAGACAAATATAAACTGTGGCTTAAAAAATCCAAGTCGGACATTATACAGGAAAC-AAGCAAATCGGCAGAAGAATCATCCTCTGTTATCGATGCTTCAAATATGCATAAAAAATTTGCAAATTATGGGTGATGTGATAGAATTACCTGATACAAATGAAGTGACCGGCAAACAAAATCATTTTTTAAAATCA]
[+] EMBL CD131962 [CTTTTTTTGGTCATTGTAGCAAAAGCTTCGGGATTCACATTATAGCGCGTCGTGCAGCTCAGCGAGCGGTCGGTCAAACCAACAATGTACNTGAAAAATTTAGTAGAAAGAAAGGTCTCATTAACTGATCAATTAGGTGCATGTAATGCTAATGATGAAATGTCGGATAATTTGGAAAATATTGACTTCTTTGTACCATATTCACGTGGTGATGAAGCAACAGAGAATGGATTGTCAATTACTGGAACAAAAAGTCAATTTTG TTAGATGCAGCAGCAGCTTCATTAGATTTACCAAATGATGAATCACAACAAGTCCATGGTGGAGTTGCAGGATCACATAGTCGAAAGCTTGTTTGGGATCGTAAACGCAAACGATTTACTGGAATGGATGCTGCCCAAGGTAAAGCAAATATGAAACGTATTAAAACTGAAAGTGGTGTATGGATTCCTGCATCATACAAAACAGACAAATATAAACTGTGGCTTAAAAAATCCAAGTCGGACATTATACAGGAAAC AAGCAAATCGGCAGAAGAATCATCCTCTGTTATCGATGCTTCAAATATGCATAAAAAATTTGCAAATTATGGGTGATGTGATAGAATTACCTGATACAAATGAAGTGACCGGCAAACAAAATCATTTTTTAAAATCA]
[+] EMBL CD185472 [ AGCAAAAGCTACATGA TCACATTATAGCGCGTCGTGCAGCTCAGCGAGCGGTCGGTCAAACCAACAATGTAC TGAAAAATTTAGTAGAAAGAAAGGTCTCATTAACTGATCAATTAGGTGCATGTAATGCTAATGATGAAATGTCGGATAATTTGGAAAATATTGACTTCTTTGTACCATATTCACGTGGTGATGAAGCAACAGAGAATGGATTGTCAATTACTGGAACAAAAAGTCAATTTTGTTTAGATGCAGCAGCAGCTTCATTAGATTTACCAAATGATGAATCACAACAAGTCCATGGTGGAGTTGCAGGATCACATAGTCGAAAGCTTGTTTGGGATCGTAAACGCAAACGATTTACTGGAATGGATGCTGCTCAAGGTAAAGCAA ATGAAACGTACTAAAACTGAAAGTGGTGTATGGATTCCTGCATCATACAAAACAGACAAATATAAACTGTGGCTTANAAAATCCAAGTCGGATATTATACAGGAAACAAAGC AATCGGCAGAAGAATCATCCTCTGTTATCGATGCT ]
[+] EMBL CD165244 [ TGAAAAATTTAGTAGAAAGAAAGGTCTCATTAACTGATCGATTAGGTGCATGTAATGCTAATGATGAAATGTCGGATAATTTGGAAAATATTGACTTCTTTGTACCATATTCACGTGGTGATGAAGCAACAGAGAATGGATTGTCAATTACTGGAACAAAAAGTCAATTTTGTTTAGATGCAGCAGCAGCTTCATTAGATTTACCAAATGATGAATCACAACAAGTCCATGGTGGAGTTGCAGGATCACATAGTCGAAAGCTTGTTTGGGATCGTANACGCA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7496#0 -CAGAGAAAGAAGATGTAACAAATAATGAAATATTAGGTGTTATACGACAACTCAAATTA 59
consensus_7496#1 CTTTTTTTGGTCATTGTAGCAAAAGCTTCGGGATTCA-CATTATA--GCGCGTCGTGCAG 57
* **** **** * *** ***** * **
consensus_7496#0 CCTACTATATTTGAAGCTTTGGGTAAACATGTGAATCCTGAAGCTTTTGCTACAATGACC 119
consensus_7496#1 CTCAGCG-AGCGGTCGGTCAAACCAACAATGTA---CNTGAAAAATTTAGTAGAA----- 108
* * * * * * ** **** * **** *** ** **
consensus_7496#0 AAAAAAAGAAAACTACATGATCACATTATAGCGCGTCGTGCAGCTCGTATTGAGAGTATC 179
consensus_7496#1 AGAAAGGTCTCATTAACTGATCA-ATTA-GGTGCAT-GTAATGCTAATGATGA-AATGTC 164
* *** * ** ****** **** * ** * ** *** * *** * * **
consensus_7496#0 ---TCATCTGAAAATTCCTCTCTTGAATCAATGAAGAAGGTTTGTGTCAATGCGATGAAA 236
consensus_7496#1 GGATAATTTGGAAAATATTGACTT----CTTTGTACCATATTCACGTG---GTGATGAAG 217
* ** ** *** * * *** * ** * * ** ** * ******
consensus_7496#0 CGATACCTTCAAACTCGTCCGAATGCATCTTGGGAATCTATTCGACGTGCAAAAGATCTA 296
consensus_7496#1 CAACAG----AGAATGGATTGTCAATTACTGGAACAAAAAGTCAATTTTGTTTAGATGCA 273
* * * * * * * * ** * * * ** * * **** *
consensus_7496#0 AGAGATGCACACTTTTCATTGCCTGTTCATCAGATTTTTGATAATTCAGCAGAGAAAGAA 356
consensus_7496#1 GCAGCAGCTTCATTAGATTTACCAAATGAT--GAATCACAACAAGTCCATGGTGGA-GTT 330
** ** ** ** ** * ** ** * * ** ** * * * *
consensus_7496#0 GATGTAACAAATAATGAAATATTAGGTGTTATACGACAACTCAAATTACCTACTATATTT 416
consensus_7496#1 GCAGGATCACATAGTCGAAAGCTTGTTTGGGATCGTAAACGCAAACGATTTACTGGAATG 390
* * * ** *** * ** * * * ** *** **** * **** * *
consensus_7496#0 GAAGCTTTGGGTAAACATGTGAATCCTGAAGCTTTTGCTACAATGACCAAAAAAAGAAAA 476
consensus_7496#1 GATGCTGCCCAAGGTAAAGCAAATA-TGAAACG-----TATTAAAACTGAAAGTGGTGTA 444
** *** * * *** **** * ** * ** *** * *
consensus_7496#0 CTACATGATCACATTATAGCGCGTCGTGCAGCTCAGCGAGCGGTCGGTCAAACCAACAAT 536
consensus_7496#1 -TGGATTCCTGCATCATA-CAAAACAGACAAAT--ATAAACTGTGGCTTAAAAAATCCAA 500
* ** *** *** * * ** * * * ** * * *** * * *
consensus_7496#0 GTACTGAAAAATTTAGTAGAAAGAAAGGTCTCATTAACTGATCAATTAGGTGCATGTAAT 596
consensus_7496#1 GT--CGGACATTATACAGGAAACAAGCAAATCGGCAGAAGAATCATCCTCTGTTATCGAT 558
** * * * * ** **** ** ** * ** ** ** **
consensus_7496#0 GCTAATGATGAAATGTCGGATAATTTGGAAAATATTGACTTCTTTGTACCATATTCACGT 656
consensus_7496#1 GCTTCAAAT-ATGCAT-AAAAAATTTGCAAATTATGGGTGATGTGATAGAATTACCTGAT 616
*** ** * * * ****** *** *** * * ** ** * *
consensus_7496#0 GGTGATGAAGCAACAGAGAATGGATTGTCAATTACTGGAACANAAAGTCAATTTTGTTTA 716
consensus_7496#1 ACAAATGAAGTGACCGGCAA-ACAAAATCATTTTTTAAAATCA----------------- 658
****** ** * ** * *** ** * **
consensus_7496#0 GATGCAGCAGCAGCTTCATTA 737
consensus_7496#1 ---------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||