cluster # 7498

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Schistosoma mansoni
cluster # 7498 cluster # 7498 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7498#0 length = 580 sequences # 3

consensus_7498#1 length = 288 sequences # 1
consensus_7498#2 length = 222 sequences # 1

consensusID : consensus_7498#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 580
fasta sequence

                              [ATTTAACTACCCAAGGTCAATGCTGAGGAAGTTGCCGAACGGTGTTTTTCGAGGAATAATAGCTTTAAGCGCTGGTATAATTACTTACAAATATCATCCATTTGTTGGTACAATAGTTTACGCAAGTTCCGCACAAATTCTCGCCTAAATTTTTCAGTGTGAAGGTGTTAGTATGCAGCCCACTATTAATGATGGTGACTATCTAGTTGTTGAAAGACTCTCAATCATTTTGGGACGTATTACAAGAGGAGATGTTGTTATTGCTTGTCAACGCAGGAAGTATGATACTACGCATGTTCTAAAGCGTATCAAGGGTCTTGGCGATGACCGAGTTACTTTCTGGGACAAGAACCATAGGGAAATTATCGCTAAGCAGGTACCTCGAGGTCATGTCTGGTTAGAAGGTGATAATACATTACAGTCATTAGACTCAAGGTCTTATGGCCCCGTCCCCGTTTCTCACTTAGAATACAAAGTATTTCTCCGTGTATGGCCGTTAAGTCACTTTGGACTCCTTCAAACACCAAAACCTGCTACTTGCACAACTGGTGAACCATACGACCCTGAATTTGTACAACGT]

[+] EMBL CD163546             [ATTTAACTACCCAAGGTCAATGCTGAGGAAGTTGCCGAACGGTGTTTTTCGAGGAATAATAGCTTTAAGCGCTGGTATAATTACTTACAAATATCATCCATTTGTTGGTACAATAGTTTACGCAAGTTCCGCACAAATTCTCGCCTAAATTTTTCAGTGTGAAGGTGTTAGTATGCAGCCCACTATTAATGATGGTGACTATCTAGTTGTTGAAAGACTCTCAATCATTTTGGGACGTATTACAAGAGGAGATGTTGTTATTGCTTGTCAACGCAGGAAGTATGATACTACGCACGTTCTAAAGCGTATCAAGGGTCTTGGCGATGACCGAGTTACTTTCTGGGACAAGAACCATAGGGAAATTATCGCTAAGCAGGTACCTCGAGGTCATGTCTGGTTAGAAGGTGATAATACA                                                                                                                                                                     ]
[-] EMBL CD131843             [                  AATGCTGAGGAAGTTGCCGAACGGTGTTTTTCGAGGAATAATAGCTTTAAGCGCTGGTATAATTACTTACAAATATCATCCATTTGTTGGTACAATAGTTTACGCAAGTTCCGCACAAATTCTCGCCTAAATTTTTCAGTGTGAAGGTGTTAGTATGCAGCCCACTATTAATGATGGTGACTATCTAGTTGTTGAAAGACTCTCAATCATTTTGGGACGTATTACAAGAGGAGATGTTGTTATTGCTTGTCAACGCAGGAAGTATGATACTACGCATGTTCTAAAGCGTATCAAGGGTCTTGGCGATGACCGAGTTACTTTCTGGGACAAGAACCATAGGGAAA TATCGCT                                                                                                                                                                                                                  ]
[-] EMBL CD200304             [                                                                                                                                                                                ttCCCACTATAAAGGAGGGTGACTATCTAGTTGTTGAAAGACTCTCAATCATTTTGGGACGTATTACAAGAGGAGATGTTGTTATTGCTTGTCAACGCAGGAAGTATGATACTACGCATGTTCTAAAGCGTATCAAGGGTCTTGGCGATGACCGAGTTACTTTCTGGGACGAGAACCATAGGGAAATTATCGCTAAGCAGGTACCTCGAGGTCATGTTTGGTTAGAAGGTGATAATACATTACAGTCATTAGACTCAAGGTCTTATGGCCCCGTCCCCGTTTCTCACTTAGAATACAAAGTATTTCTCCGTGTATGGCCGTTAAGTCACTTTGGACTCCTTCAAACACCAAAACCTGCTACTTGCACAACTGGTGAACCATACGACCCTGAATTTGTACAACGT]




>consensus_7498#0
ATTTAACTACCCAAGGTCAATGCTGAGGAAGTTGCCGAACGGTGTTTTTCGAGGAATAAT
AGCTTTAAGCGCTGGTATAATTACTTACAAATATCATCCATTTGTTGGTACAATAGTTTA
CGCAAGTTCCGCACAAATTCTCGCCTAAATTTTTCAGTGTGAAGGTGTTAGTATGCAGCC
CACTATTAATGATGGTGACTATCTAGTTGTTGAAAGACTCTCAATCATTTTGGGACGTAT
TACAAGAGGAGATGTTGTTATTGCTTGTCAACGCAGGAAGTATGATACTACGCATGTTCT
AAAGCGTATCAAGGGTCTTGGCGATGACCGAGTTACTTTCTGGGACAAGAACCATAGGGA
AATTATCGCTAAGCAGGTACCTCGAGGTCATGTCTGGTTAGAAGGTGATAATACATTACA
GTCATTAGACTCAAGGTCTTATGGCCCCGTCCCCGTTTCTCACTTAGAATACAAAGTATT
TCTCCGTGTATGGCCGTTAAGTCACTTTGGACTCCTTCAAACACCAAAACCTGCTACTTG
CACAACTGGTGAACCATACGACCCTGAATTTGTACAACGT

consensusID : consensus_7498#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 288
fasta sequence

                              [CCGAAATTTAACTACTCAAGGTCAATGCTGAGGAAGTTGCCGAACGGTGTTTTTCGAGGAATAATAGCTTTAAGCGCTGGTATAATTACTTACAAATATCATCCATTTGTTGGTACAATAGTTTACTGTGAAGGTGTTAGTATGCAGCCCACTATTAATGATGGTGACTATCTAGTTGTTGAAAGACTCTCAATCATTTTGGGACGTATTACAAGGTACCTCGAGGTCATGTTTGGTTAGAAGGTGATAATACATTACAGTCATTAGACTCAAGGTCTTATGGCCCCG]

[+] EMBL CD133295             [CCGAAATTTAACTACTCAAGGTCAATGCTGAGGAAGTTGCCGAACGGTGTTTTTCGAGGAATAATAGCTTTAAGCGCTGGTATAATTACTTACAAATATCATCCATTTGTTGGTACAATAGTTTACTGTGAAGGTGTTAGTATGCAGCCCACTATTAATGATGGTGACTATCTAGTTGTTGAAAGACTCTCAATCATTTTGGGACGTATTACAAGGTACCTCGAGGTCATGTTTGGTTAGAAGGTGATAATACATTACAGTCATTAGACTCAAGGTCTTATGGCCCCG]




>consensus_7498#1
CCGAAATTTAACTACTCAAGGTCAATGCTGAGGAAGTTGCCGAACGGTGTTTTTCGAGGA
ATAATAGCTTTAAGCGCTGGTATAATTACTTACAAATATCATCCATTTGTTGGTACAATA
GTTTACTGTGAAGGTGTTAGTATGCAGCCCACTATTAATGATGGTGACTATCTAGTTGTT
GAAAGACTCTCAATCATTTTGGGACGTATTACAAGGTACCTCGAGGTCATGTTTGGTTAG
AAGGTGATAATACATTACAGTCATTAGACTCAAGGTCTTATGGCCCCG

consensusID : consensus_7498#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 222
fasta sequence

                              [CGGCACGAGGATGCTGAGGAAGTTGCCGAACGGTGTTTTTCGAGGAATAATAGCTTTAAGCGCTGGTATAATTACTTACAAATATCATCCATTTGTTGGTACAATAGTTTACGCAAGTTCCGCACAAATTCTCGCCTAAATTTTTCAGTGTGAAGGTGTTAGTATGCAGCCCACTATTAATGATGGTGACTATCTAGTTGTTGAAAGACTCTCAATCATTTT]

[+] EMBL CD077553             [CGGCACGAGGATGCTGAGGAAGTTGCCGAACGGTGTTTTTCGAGGAATAATAGCTTTAAGCGCTGGTATAATTACTTACAAATATCATCCATTTGTTGGTACAATAGTTTACGCAAGTTCCGCACAAATTCTCGCCTAAATTTTTCAGTGTGAAGGTGTTAGTATGCAGCCCACTATTAATGATGGTGACTATCTAGTTGTTGAAAGACTCTCAATCATTTT]




>consensus_7498#2
CGGCACGAGGATGCTGAGGAAGTTGCCGAACGGTGTTTTTCGAGGAATAATAGCTTTAAG
CGCTGGTATAATTACTTACAAATATCATCCATTTGTTGGTACAATAGTTTACGCAAGTTC
CGCACAAATTCTCGCCTAAATTTTTCAGTGTGAAGGTGTTAGTATGCAGCCCACTATTAA
TGATGGTGACTATCTAGTTGTTGAAAGACTCTCAATCATTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7498#0      -----ATTTAACTACCCAAGGTCAATGCTGAGGAAGTTGCCGAACGGTGTTTTTCGAGGA 55
consensus_7498#2      -----------CGGCACGAGG---ATGCTGAGGAAGTTGCCGAACGGTGTTTTTCGAGGA 46
consensus_7498#1      CCGAAATTTAACTACTCAAGGTCAATGCTGAGGAAGTTGCCGAACGGTGTTTTTCGAGGA 60
                                 *  * * ***   ************************************

consensus_7498#0      ATAATAGCTTTAAGCGCTGGTATAATTACTTACAAATATCATCCATTTGTTGGTACAATA 115
consensus_7498#2      ATAATAGCTTTAAGCGCTGGTATAATTACTTACAAATATCATCCATTTGTTGGTACAATA 106
consensus_7498#1      ATAATAGCTTTAAGCGCTGGTATAATTACTTACAAATATCATCCATTTGTTGGTACAATA 120
                      ************************************************************

consensus_7498#0      GTTTACGCAAGTTCCGCACAAATTCTCGCCTAAATTTTTCAGTGTGAAGGTGTTAGTATG 175
consensus_7498#2      GTTTACGCAAGTTCCGCACAAATTCTCGCCTAAATTTTTCAGTGTGAAGGTGTTAGTATG 166
consensus_7498#1      GTTTAC------------------------------------TGTGAAGGTGTTAGTATG 144
                      ******                                    ******************

consensus_7498#0      CAGCCCACTATTAATGATGGTGACTATCTAGTTGTTGAAAGACTCTCAATCATTTTGGGA 235
consensus_7498#2      CAGCCCACTATTAATGATGGTGACTATCTAGTTGTTGAAAGACTCTCAATCATTTT---- 222
consensus_7498#1      CAGCCCACTATTAATGATGGTGACTATCTAGTTGTTGAAAGACTCTCAATCATTTTGGGA 204
                      ********************************************************    

consensus_7498#0      CGTATTACAAGAGGAGATGTTGTTATTGCTTGTCAACGCAGGAAGTATGATACTACGCAT 295
consensus_7498#2      ------------------------------------------------------------
consensus_7498#1      CGTATTACAAGGTACCTCGAGGTCATGTTTGGTTA--GAAGGTGATAATACATTACAGTC 262
                                                                                  

consensus_7498#0      GTTCTAAAGCGTATCAAGGGTCTTGGCGATGACCGAGTTACTTTCTGGGACAAGAACCAT 355
consensus_7498#2      ------------------------------------------------------------
consensus_7498#1      ATTAGACTCAAGGTCTTATGGCCCCG---------------------------------- 288
                                                                                  

consensus_7498#0      AGGGAAATTATCGCTAAGCAGGTACCTCGAGGTCATGTCTGGTTAGAAGGTGATAATACA 415
consensus_7498#2      ------------------------------------------------------------
consensus_7498#1      ------------------------------------------------------------
                                                                                  

consensus_7498#0      TTACAGTCATTAGACTCAAGGTCTTATGGCCCCGTCCCCGTTTCTCACTTAGAATACAAA 475
consensus_7498#2      ------------------------------------------------------------
consensus_7498#1      ------------------------------------------------------------
                                                                                  

consensus_7498#0      GTATTTCTCCGTGTATGGCCGTTAAGTCACTTTGGACTCCTTCAAACACCAAAACCTGCT 535
consensus_7498#2      ------------------------------------------------------------
consensus_7498#1      ------------------------------------------------------------
                                                                                  

consensus_7498#0      ACTTGCACAACTGGTGAACCATACGACCCTGAATTTGTACAACGT 580
consensus_7498#2      ---------------------------------------------
consensus_7498#1      ---------------------------------------------