cluster # 7499

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Schistosoma mansoni
cluster # 7499 cluster # 7499 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7499#0 length = 416 sequences # 1

consensus_7499#1 length = 380 sequences # 4

consensusID : consensus_7499#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 416
fasta sequence

                              [TAGGACTACTATTGATTGGACTTGAGGTTGGGCCAGATGAGAAGAAGCGGTTGAAGATATTTCTTTTGTACGCATAGCTCCTGTTTCATCATTCGGATGGTTACTGTTTCAGTCTTTCGAAGGACTTTAAGTTTGATAAGCTTTGGCAGAAAATTACTGACCCGATAAATAATTGACAATATTTATGTTACGGAAATGTGTTTCACAGAAAATTTAATTGGTTTTTTAGGTTAGATTTTATAGGTAGTACAATGATCAACACAAACTTTCAAGCAACAAATTTGTTAACTGCTTGACAAACGCTCTCAAGAAATCTATAACATTATTTACATATCCACTTGACCTTAATACAAAAAGTAAACACTTACCCTAATATAGCTCCCCATGAACAAGGCCATCCAATCAAAAAACGGGTA]

[+] EMBL CD159488             [TAGGACTACTATTGATTGGACTTGAGGTTGGGCCAGATGAGAAGAAGCGGTTGAAGATATTTCTTTTGTACGCATAGCTCCTGTTTCATCATTCGGATGGTTACTGTTTCAGTCTTTCGAAGGACTTTAAGTTTGATAAGCTTTGGCAGAAAATTACTGACCCGATAAATAATTGACAATATTTATGTTACGGAAATGTGTTTCACAGAAAATTTAATTGGTTTTTTAGGTTAGATTTTATAGGTAGTACAATGATCAACACAAACTTTCAAGCAACAAATTTGTTAACTGCTTGACAAACGCTCTCAAGAAATCTATAACATTATTTACATATCCACTTGACCTTAATACAAAAAGTAAACACTTACCCTAATATAGCTCCCCATGAACAAGGCCATCCAATCAAAAAACGGGTA]




>consensus_7499#0
TAGGACTACTATTGATTGGACTTGAGGTTGGGCCAGATGAGAAGAAGCGGTTGAAGATAT
TTCTTTTGTACGCATAGCTCCTGTTTCATCATTCGGATGGTTACTGTTTCAGTCTTTCGA
AGGACTTTAAGTTTGATAAGCTTTGGCAGAAAATTACTGACCCGATAAATAATTGACAAT
ATTTATGTTACGGAAATGTGTTTCACAGAAAATTTAATTGGTTTTTTAGGTTAGATTTTA
TAGGTAGTACAATGATCAACACAAACTTTCAAGCAACAAATTTGTTAACTGCTTGACAAA
CGCTCTCAAGAAATCTATAACATTATTTACATATCCACTTGACCTTAATACAAAAAGTAA
ACACTTACCCTAATATAGCTCCCCATGAACAAGGCCATCCAATCAAAAAACGGGTA

consensusID : consensus_7499#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 380
fasta sequence

                              [TGGAAGTGTTCCTTATGGATACAATGCTAGTTTATCGAATTCCACTTCTTACAATGAGGAAGAATATCCTTTTAATATAACCGATCCACGTACTCAGTTTGCTGCTCTTTTATTGGTAAATCCAGTTTTATCTGGAGTTTTAAGACAACTTGCTTTGACTACAATTCTGACTCGGGCTGGTTTGGGTCTTGATCCTCAAGCATTGAAACAAGTATGTGGTAGTGTATTTCGTCTTGCATTCATACCATGTCTTACAGAAGCTACATCTTTGATGCTATTTAGCCGTTTTTTGATTGGATGGCCTTGGTCATGGGGAGCTATATTAGGATTCGTTTGTGCAGCTGTATCACCAGCTGTGATAGTGCCAAATATGATGCGCT]

[+] EMBL CD170799             [TGGAAGTGTTCCTTATGGATACAATGCTAGTTTATCGAATTCCACTTCTTACAATGAGGAAGAATATCCCTTTAATATAACCGATCCACGTACTCAGTTTGCTGCTCTTTTATTGGTAAATCCAGTTTTATCTGGAGTTTTAAGACAACTTGCTTTGACTACAATTCTGACTCGGGCTGGTTTGGGTCTTGATCCTCAAGCATTGAAACAAGTATGTGGTAGTGTATTTCGTCTTGCATTCATACCATGTCTTACAGAAGCTACATCTTTGATGCTATTTAGCCGTTTTTTGATTGGATGGCCTTGGTCATGGGGAGCTATATTAGGATTCGTTTGTGCAGCTGTATCACCAGCTGTGATAGTGCCAAATATGATGCGCT]
[+] EMBL CD121152             [TGGAAGTGTTCCTTATGGATACAATGCTAGTTTATCGAATTCCACTTCTTACAATGAGGAAGAATATCCTTTTAATATAACCGATCCACGTACTCAGTTTGCTGCTCTTTTATTGGTAAATCCAGTTTTATCTGGAGTTTTAAGACAACTTGCTTTGACTACAATTCTGACTCGGGCTGGTTTGGGTCTTGATCCTCAAGCATTGAAACAAGTATGTGGTAGTGTATTTCGTCTTGCATTCATACCATGTCTTACAGAAGCTACATCTTTGATGCTATTTAGCCGTTTTTTGAT                                                                                      ]
[+] EMBL CD121229             [TGGAAGTGTTCCTTATGGATACAATGCTAGTTTATCGAATTCCACTTCTTACAATGAGGAAGAATATCCTTTTAATATAACCGATCCACGTACTCAGTTTGCTGCTCTTTTATTGGTAAATCCAGTTTTATCTGGAGTTTTAAGACAACTTGCTTTGACTACAATTCTGACTCGGGCTGGTTTGGGTCTTGATCCTCAAGCATTGAAACAAGTATGTGGTAGTGTATTTCGTCTTGCATTCATACCATGTCTTACAGAAGCTACATCTTTGATGCTATTTAGCCGTTT                                                                                            ]
[+] EMBL CD121756             [TGGAAGTGTTCCTTATGGATACAATGCTAGTTTATCGAATTCCACTTCTTACAATGAGGAAGAATATCCTTTTAATATAACCGATCCACGTACTCAGTTTGCTGCTCTTTTATTGGTAAATCCAGTTTTATCTGGAGTTTTAAGACAACTTGCTTTGACTACAATTCTGACTCGGGCTGGTTTGGGTCTTGATCCTCAAGCATTGAAACAAGTATGTGGTAGTGTATTTCGTCTTGCATTCATACCATGTCTTACAGAAGCTACATCTTTGATGCTATTTAGCCGTTT                                                                                            ]




>consensus_7499#1
TGGAAGTGTTCCTTATGGATACAATGCTAGTTTATCGAATTCCACTTCTTACAATGAGGA
AGAATATCCTTTTAATATAACCGATCCACGTACTCAGTTTGCTGCTCTTTTATTGGTAAA
TCCAGTTTTATCTGGAGTTTTAAGACAACTTGCTTTGACTACAATTCTGACTCGGGCTGG
TTTGGGTCTTGATCCTCAAGCATTGAAACAAGTATGTGGTAGTGTATTTCGTCTTGCATT
CATACCATGTCTTACAGAAGCTACATCTTTGATGCTATTTAGCCGTTTTTTGATTGGATG
GCCTTGGTCATGGGGAGCTATATTAGGATTCGTTTGTGCAGCTGTATCACCAGCTGTGAT
AGTGCCAAATATGATGCGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7499#0      TAGGACTACTATTGATTGGACTTGAGGTTGG---GCCAGATGAGAA-----GAAGCGGTT 52
consensus_7499#1      TGGAAGTGTTCCTTAT-GGATACAATGCTAGTTTATCGAATTCCACTTCTTACAATGAGG 59
                      * * * *  *  * ** ***    * * * *     *  **   *        *  *   

consensus_7499#0      GAAGATATTTCTTTTGTACGCATAGCTCCTGT------TTCATCATTCGGATGGTTACTG 106
consensus_7499#1      AAGAATATCCTTTTAATATAACCGATCCACGTACTCAGTTTGCTGCTCTTTTATTGGTAA 119
                       *  ****   ***  **         *  **      **      **   *  *     

consensus_7499#0      TTTCAGTCTTTCGAAGGACTTTAAGTTTGATAAGCTTTGGCAGAAAATTACTGACCCGAT 166
consensus_7499#1      ATCCAGTTTTATCTGGAGTTTTAAGAC-AACTTGCTTTGACTACAATT--CTGACTCGGG 176
                       * **** **     *   ******    *   ****** *   ** *  ***** **  

consensus_7499#0      AAA---TAATTGACAATATTTATGTTACGGAA-ATGTGTTTCACAGAAAATTTAATTGGT 222
consensus_7499#1      CTGGTTTGGGTCTTGATCCTCAAGCATTGAAACAAGTATGTGGTAGTGTATTTCGTCTTG 236
                            *   *    **  * * *    * ** * ** * *   **   ****  *    

consensus_7499#0      TTTTTAGGTTAGATTTTATAGGTAGTACAATGATCAACACAAACTTTCAAGCAACAAATT 282
consensus_7499#1      CATTCATACCATGTCTTACAGAAGCTACA-TCTTTGATGCTA---TTTAGCC-----GTT 287
                        ** *    *  * *** **    **** *  *  *  * *   ** *  *      **

consensus_7499#0      TGTTAACTGCTTGACAAACGCTCTCAAGAAATCTATAACATTATTTACATATCCACTTGA 342
consensus_7499#1      TTTTGATTGGATGGCCTTGGTCATGGGGAG--CTATATTAGGATTCGTTTGTGCAGCTG- 344
                      * ** * **  ** *    *   *   **   *****  *  ***    * * **  ** 

consensus_7499#0      CCTTAATACAAAAAGTAAACACTTACCCTAATATAGCTCCCCATGAACAAGGCCATCCAA 402
consensus_7499#1      ---TATCACCAGCTGTGATAGT---GCCAAATATGATGCGCT------------------ 380
                         **  ** *   ** *        ** *****    * *                   

consensus_7499#0      TCAAAAAACGGGTA 416
consensus_7499#1      --------------