cluster # 750

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Schistosoma mansoni
cluster # 750 cluster # 750 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_750#0 length = 514 sequences # 1

consensus_750#1 length = 376 sequences # 1

consensusID : consensus_750#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 514
fasta sequence

                              [TAATGCTACACTACTATTTGAGAAACATTTGATATATATATTATATCCAAAAGTATAATTTTGTGTTATTTTTTCGCAATTACATCTAAATTTTAACTTCTGTACATTTATATTTCATATTAAAGTTTCATTGACGGCATGATTTATTCTCTTTTTACATAATCACTAATTTGTTTGTAACATTGTTTATATAGTGGTATATTGTAGAAATTTCAATTTTGTACATATTTACATATATACATATATACAACCTTTCTTTTATATAGTACCACTACTAAATTAACTATTTCTATGAATTTGGTGTTCATCTTGTTGTGCTAATGAGGTATGGCAACTTGGACTGATGCACATATGTGACTGGTCCTACGTTGTAGCTGATTGACTGACTTTGATACTCTATCTACTACCTCTATTAATACTGCTACTTTAGCATTCGTCTTCATAATTTCATCTCTCCATCCTAACATGATGCAGTCACATGAACCGGTATACATATGTGCCGTGTTCTACGTTG]

[+] EMBL CD065211             [TAATGCTACACTACTATTTGAGAAACATTTGATATATATATTATATCCAAAAGTATAATTTTGTGTTATTTTTTCGCAATTACATCTAAATTTTAACTTCTGTACATTTATATTTCATATTAAAGTTTCATTGACGGCATGATTTATTCTCTTTTTACATAATCACTAATTTGTTTGTAACATTGTTTATATAGTGGTATATTGTAGAAATTTCAATTTTGTACATATTTACATATATACATATATACAACCTTTCTTTTATATAGTACCACTACTAAATTAACTATTTCTATGAATTTGGTGTTCATCTTGTTGTGCTAATGAGGTATGGCAACTTGGACTGATGCACATATGTGACTGGTCCTACGTTGTAGCTGATTGACTGACTTTGATACTCTATCTACTACCTCTATTAATACTGCTACTTTAGCATTCGTCTTCATAATTTCATCTCTCCATCCTAACATGATGCAGTCACATGAACCGGTATACATATGTGCCGTGTTCTACGTTG]




>consensus_750#0
TAATGCTACACTACTATTTGAGAAACATTTGATATATATATTATATCCAAAAGTATAATT
TTGTGTTATTTTTTCGCAATTACATCTAAATTTTAACTTCTGTACATTTATATTTCATAT
TAAAGTTTCATTGACGGCATGATTTATTCTCTTTTTACATAATCACTAATTTGTTTGTAA
CATTGTTTATATAGTGGTATATTGTAGAAATTTCAATTTTGTACATATTTACATATATAC
ATATATACAACCTTTCTTTTATATAGTACCACTACTAAATTAACTATTTCTATGAATTTG
GTGTTCATCTTGTTGTGCTAATGAGGTATGGCAACTTGGACTGATGCACATATGTGACTG
GTCCTACGTTGTAGCTGATTGACTGACTTTGATACTCTATCTACTACCTCTATTAATACT
GCTACTTTAGCATTCGTCTTCATAATTTCATCTCTCCATCCTAACATGATGCAGTCACAT
GAACCGGTATACATATGTGCCGTGTTCTACGTTG

consensusID : consensus_750#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 376
fasta sequence

                              [AGTTATCCCTTGGGCACTATGGTCACGCTCTCAGGTCATTAAGACCACTTCTAACCCAAATTTCCTTTTCAGGTACCCCTAAAAGAACCGTTCCACGCTGTGGGCAACCGGGAAGTGATAATTGCCCTCATACCTCTAACAGCACTCAATGACTGATTGACTGAATTTATCATTCCTTAGATAACCATCATAAAGTCTTTTAATTATAATAAATCCAGTATGCAGAAGTATTTCCTTGATGTTTCTCAATTTTCTTTATTTGTTTATTTTGCCTCCTCATCGTCCTTACTATATTTTACCATTAATGTATTCTACTTTTCTCCGATATAGGGGTGTTTCACTTAAATTTAATAATTATTGTGAATTTCCACGTCAT]

[+] EMBL CD088341             [AGTTATCCCTTGGGCACTATGGTCACGCTCTCAGGTCATTAAGACCACTTCTAACCCAAATTTCCTTTTCAGGTACCCCTAAAAGAACCGTTCCACGCTGTGGGCAACCGGGAAGTGATAATTGCCCTCATACCTCTAACAGCACTCAATGACTGATTGACTGAATTTATCATTCCTTAGATAACCATCATAAAGTCTTTTAATTATAATAAATCCAGTATGCAGAAGTATTTCCTTGATGTTTCTCAATTTTCTTTATTTGTTTATTTTGCCTCCTCATCGTCCTTACTATATTTTACCATTAATGTATTCTACTTTTCTCCGATATAGGGGTGTTTCACTTAAATTTAATAATTATTGTGAATTTCCACGTCAT]




>consensus_750#1
AGTTATCCCTTGGGCACTATGGTCACGCTCTCAGGTCATTAAGACCACTTCTAACCCAAA
TTTCCTTTTCAGGTACCCCTAAAAGAACCGTTCCACGCTGTGGGCAACCGGGAAGTGATA
ATTGCCCTCATACCTCTAACAGCACTCAATGACTGATTGACTGAATTTATCATTCCTTAG
ATAACCATCATAAAGTCTTTTAATTATAATAAATCCAGTATGCAGAAGTATTTCCTTGAT
GTTTCTCAATTTTCTTTATTTGTTTATTTTGCCTCCTCATCGTCCTTACTATATTTTACC
ATTAATGTATTCTACTTTTCTCCGATATAGGGGTGTTTCACTTAAATTTAATAATTATTG
TGAATTTCCACGTCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_750#0      TAATGCTACACTACTATTTGAGAAACATTTGATATATATATTATATCCAAAAGTATAATT 60
consensus_750#1      ------------------------------------------------------------
                                                                                 

consensus_750#0      TTGTGTTATTTTTTCGCAATTACATCTAAATTTTAACTTCTGTACATTTATATTTCATAT 120
consensus_750#1      ------------------------------------------------------------
                                                                                 

consensus_750#0      TAAAGTTTCATTGACGGCATGATTTATTCTCTTTTTACATAATCACTAATTTGTTTGTAA 180
consensus_750#1      ---AGTTATCCCTTGGGCACTATG-GTCACGCTCTCAGGTCATTA--AGACCACTTCTAA 54
                        ****        ****  **   *     * * *  * ** *  *      ** ***

consensus_750#0      CATTGTTTATATAGTGGTATATTGTAGAAATTTCAATTTTGTACATATTTACATATATAC 240
consensus_750#1      CCCAAATTTCCTTTTCAGGTACCCCTAAAAGAACCGTTCCACGC---TGTGGGCAACCGG 111
                     *     **   *  *    **      ***   *  **     *   * *    *     

consensus_750#0      ATATATACAACCTTTCTTTTATATAGTACCACTACTAAATTAACTATTTCTATGAATTTG 300
consensus_750#1      GAAGTGATAATTGCCCTCATACCTC-TAACAGCACTCAAT-GACTGATTGACTGAATTTA 169
                       *   * **     **  **  *  ** **  *** ***  ***  **   ******* 

consensus_750#0      GTGTTCATCTTGTTGTGCTAATGAGGTATGGCAACTTGGACTGATGCACATATGTGACTG 360
consensus_750#1      TCATTCCTTAGATAACCATCATAAAGTCTTTTAATTATAATAAATCCA-GTATGCAGA-A 227
                        *** *    *     * ** * ** *   ** *   *   ** **  ****      

consensus_750#0      GTCCTACGTTGTAGCTGATTGACTGACTTTGATACTCTATCTACTACCTCTATTAATACT 420
consensus_750#1      GTATTTCCTTGATGTTTCTCAATTTTCTTTATTTGTTTATTTTGCCTCCTCATCGTCCTT 287
                     **  * * ***  * *  *  * *  ****  *  * *** *     *   **      *

consensus_750#0      GCTAC--TTTAGCATTCGTCTTCATAATTTCATCTCTCCATCCTAACATGATGCAGTCAC 478
consensus_750#1      ACTATATTTTACCATTAATGT-----ATTCTACTTTTCTCCGATATAGGGGTGTT-TCAC 341
                      ***   **** ****  * *     ***  *  * **     **    * **   ****

consensus_750#0      ATGAACCGGTATACATATGTGCCGTGTTCTACGTTG- 514
consensus_750#1      TTAAATTTA-ATAATTAT-TGTGAATTTCCACGTCAT 376
                      * **     ***  *** **     *** ****