cluster # 7501

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Schistosoma mansoni
cluster # 7501 cluster # 7501 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7501#0 length = 688 sequences # 2

consensus_7501#1 length = 600 sequences # 3

consensusID : consensus_7501#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 688
fasta sequence

                              [TTCGGCACGAGGCGATACTGGAAAGCCACTGTGGGAAGCTCGTGCAGACATTGAGGCTTGTGCAGATTCATTTGAGCTATTTGCTGGTTTTATCCCAAGTTTTGTTGGGACTCATTCTCCTGTCCCACCAAATCCTGGCAGTTTTTATTATACCAGAAGAGAACCATTTGGACTTTGTGCTGGTATCGGAGCATGGAATTTTCCTTTTCAAATGGCTGTATGGAAATCTGTTCCTGCGTTAGCTGCTGGAAATTCCTTCATATTTAAACCATCTCCTTTAACTCCATTAACAGCTATTCGTTTATACGAATTGTATAAACTTGCTGGATGTCCTGAAAATCTTTACCAAGTTGTTCTAGGAGGTGTTGAAATTGGTCAAGCATTAGTAAATCATCCTTTAGTTAGAAAAGTATCATTTACAGGAAGTGTTGCAGGAGGTCGATCTGTGCTTAAGTGCGCTGCTGAACGCATTATACCAAGTACACTTGAACTAGGCGGAAAATCACCATTAATTATAATGTCAGATGCTAATTTAGATGAAGCTGTTAAAGGCACTTTGATGGCTAATTTTTATACTCAAGGACAAGTATGTTCTAATGCTGCTCGTGTATTTGTTCATAGATCTATTGCAGCACCATTCACTCAAAAACTTATTGAATCAGTTAAACCAATTTTAGNTCGTGATCCT]

[+] EMBL CD081472             [TTCGGCACGAGGCGATACTGGAAAGCCACTGTGGGAAGCTCGTGCAGACATTGAGGCTTGTGCAGATTCATTTGAGCTATTTGCTGGTTTTATCCCAAGTTTTGTTGGGACTCATTCTCCTGTCCCACCAAATCCTGGCAGTTTTTATTATACCAGAAGAGAACCATTTGGACTTTGTGCTGGTATCGGAGCATGGAATTTTCCTTTTCAAATGGCTGTATGGAAATCTGTTCCTGCGTTAGCTGCTGGAAATTCCTTCATATTTAAACCATCTCCTTTAACTCCATTAACAGCTATTCGTTTATACGAATTGTATAAACTTGCTGGATGTCCTGAAAATCTTTACCAAGTTGTTCTAGGAGGTGTTGAAATTGGTCAAGCATTAGTAAATCATCCTTTAGTTAGAAAAGTATCATTTACAGGAAGTGTTGCAGGAGGTCGATCTGTGCTTAAGTGCGCTGCTGAACGCATTATACCAAGTACACTTGAACTAGGCGGAAAATCACCATTAATTATAATGTCAGATGCTAATTTAGATGAAGCTGTTAAAGGCACTTTGATGGCTAATTTTTATACTCAAGGACAAGTATGTTCTAATGCTGCTCGTGTATTTGTTCATAGATCTATTGCAGCACCATTCACTCAAAAACTTATTGAATCAGTTAAACCAATTTTAGNTCGTGATCCT]
[-] EMBL CD069052             [            aGATACTGGAAAGCCACTGTGGGAAGCTCGTGCAGACATTGAGGCTTGTGCAGATTCATTTGAGCTATTTGCTGGTTTTATCCCAAGTTTTGTTGGGACTCATTCTCCTGTCCCACCAAATCCTGGCAGTTTTTATTATACCAGAAGAGAACCATTTGGACTTTGTGCTGGTATCGGAGCATGGAATTTTCCTTTTCAAATGGCTGTATGGAAATCTGTTCCTGCGTTAGCTGCTGGAAATTCCTTCATATTTAAACCATCTCCTTTAACTCCATTAACAGCTATTCGTTTATACGAATTGTATAAACTTGCTGGATGTCCTGAAAATCTTTACCAAGTTGTTCTAGGAGGTGTTGAAATTGGTCAAGCATTAGTAAATCATCCTTTAGTTAGAAAAGTATCATTTACAGGAAGTGTTGCAG                                                                                                                                                                                                                                                              ]




>consensus_7501#0
TTCGGCACGAGGCGATACTGGAAAGCCACTGTGGGAAGCTCGTGCAGACATTGAGGCTTG
TGCAGATTCATTTGAGCTATTTGCTGGTTTTATCCCAAGTTTTGTTGGGACTCATTCTCC
TGTCCCACCAAATCCTGGCAGTTTTTATTATACCAGAAGAGAACCATTTGGACTTTGTGC
TGGTATCGGAGCATGGAATTTTCCTTTTCAAATGGCTGTATGGAAATCTGTTCCTGCGTT
AGCTGCTGGAAATTCCTTCATATTTAAACCATCTCCTTTAACTCCATTAACAGCTATTCG
TTTATACGAATTGTATAAACTTGCTGGATGTCCTGAAAATCTTTACCAAGTTGTTCTAGG
AGGTGTTGAAATTGGTCAAGCATTAGTAAATCATCCTTTAGTTAGAAAAGTATCATTTAC
AGGAAGTGTTGCAGGAGGTCGATCTGTGCTTAAGTGCGCTGCTGAACGCATTATACCAAG
TACACTTGAACTAGGCGGAAAATCACCATTAATTATAATGTCAGATGCTAATTTAGATGA
AGCTGTTAAAGGCACTTTGATGGCTAATTTTTATACTCAAGGACAAGTATGTTCTAATGC
TGCTCGTGTATTTGTTCATAGATCTATTGCAGCACCATTCACTCAAAAACTTATTGAATC
AGTTAAACCAATTTTAGNTCGTGATCCT

consensusID : consensus_7501#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 600
fasta sequence

                              [GTTTCAAAGCGCTTTTATCCGATTCAGTAATTTGACTGAATTTTCAACATCAGCAACCAGATGTCAACAATTTCAAATGAATTGTGAATCATTTCAAGAGTGTCGTAAACAGGCTATTGAAAGACTCCACAAATGGTTAAATAATAGTCAGCTTCCATTGAAATTTGCTGCAGGGGATACGAAAGATCCAAGTTGCAATTACGATTATACTAGTTATGATCCGTCCACTTGGTTACCTTTGGTTCATTACAAACAAACAACATATTCACGACTTGATGAAATGGCTATTAACGCCTGTAAAGCACAAAAGCAATGGATTGATTTACCATTACTAGAACGTGCCAAAATTCTTAGAAAAGTTGGTGATCTTGTTCGTGCTGAAACAGATTGGCTTGCTGAATTAGAGACACTAGATACTGGAAAGCCACTGTGGGAAGCTCGTGCAGACATTGAGGCTTGTGCAGATTCATTTGAGCTATTTGCTGGTTTTATCCCAAGTTTTGTTGGGACTCATTCTCCTGTCCCACCAAATTCTGGCAGTTTTTATTATACCAGAAGAGAACCATTTGGACTTTGTGCTGGTATCGGAGCATGGAATTT]

[-] EMBL CD146916             [GTTTCAAAGCGCTTTTATCCGATTCAGTAATTTGACTGAATTTTCAACATCAGCAACCAGATGTCAACAATTTCAAATGAATTGTGAATCATTTCAAGAGTGTCGTAAACAGGCTATTGAAAGACTCCACAAATGGTTAAATAATAGTCAGCTTCCATTGAAATTTGCTGCAGGGGATACGAAAGATCCAAGTTGCAATTACGATTATACTAGTTATGATCCGTCCACTTGGTTACCTTTGGTTCATTACAAACAAACAACATATTCACGACTTGATGAAATGGCTATTAACGCCTGTAAAGCACAAAAGCAATGGATTGATTTACCATTAATAGAACGTGCCAAAATTCTTAGAAAAGTTGGTGATCTTGTTCGTGCTGAAACAGATTGGCTTGCTGAATTAGAGACACTAGATACTGGAAAGCCACTGTGGGAAGCTCGTGCAGACATTGAGGCTTGTGCAGATTCATTT                                                                                                                                ]
[+] EMBL CD157153             [                                                                                                                                                                                  ACGAAAGATCCAAGTCGCAATTACGATTATACTAGTTATGATCCGTCCACTTGGTTACCTTTGGTTCATTACAAACAAACAACATATTCACGACTTGATGAAATGGCTATTAACGCCTGTAAAGCACAAAAGCAATGGATTGATTTACCATTACTAGAACGTGCCAAAATTCTTAGAAAAGTTGGTGATCTTGTTCGTGCTGAAACAGATTGGCTTGCTGAATTAGAGACACTAGATACTGGAAAGCCACTGTGGGAAGCTCGTGCAGACATTGAGGCTTGTGCAGATTCATTTGAGCTATTTGCTGGTTTTATCCCAAGTTTTGTTGGGACTCATTCTCCTGTCCCACCAAATTCTGGCAGTTTTTATTATACCAGAAGAGAACCATTTGGACTTTGTGCTGGTATCGGAGCATGGAATTT]
[+] EMBL CD154583             [                                                                                                                                                                                             AAGTTGCAATTACGATTATACTAGTTATGATCCGTCCACTTGGTTACCTTTGGTTCATTACAAACAAACAACATATTCACGACTTGATGAAATGGCTATTAACGCCTGTAAAGCACAAAAGCAATGGATTGATTTGCCATTACTAGAACGTGCC                                                                                                                                                                                                                                                                 ]




>consensus_7501#1
GTTTCAAAGCGCTTTTATCCGATTCAGTAATTTGACTGAATTTTCAACATCAGCAACCAG
ATGTCAACAATTTCAAATGAATTGTGAATCATTTCAAGAGTGTCGTAAACAGGCTATTGA
AAGACTCCACAAATGGTTAAATAATAGTCAGCTTCCATTGAAATTTGCTGCAGGGGATAC
GAAAGATCCAAGTTGCAATTACGATTATACTAGTTATGATCCGTCCACTTGGTTACCTTT
GGTTCATTACAAACAAACAACATATTCACGACTTGATGAAATGGCTATTAACGCCTGTAA
AGCACAAAAGCAATGGATTGATTTACCATTACTAGAACGTGCCAAAATTCTTAGAAAAGT
TGGTGATCTTGTTCGTGCTGAAACAGATTGGCTTGCTGAATTAGAGACACTAGATACTGG
AAAGCCACTGTGGGAAGCTCGTGCAGACATTGAGGCTTGTGCAGATTCATTTGAGCTATT
TGCTGGTTTTATCCCAAGTTTTGTTGGGACTCATTCTCCTGTCCCACCAAATTCTGGCAG
TTTTTATTATACCAGAAGAGAACCATTTGGACTTTGTGCTGGTATCGGAGCATGGAATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7501#0      TTCGGCACGAGGCGATACTGGAAAGCCACTGTGGGAAGCTCGTGCAGACATTGAGGCTTG 60
consensus_7501#1      ------------------------------------------------------------
                                                                                  

consensus_7501#0      TGCAGATTCATTTGAGCTATTTGCTGGTTTTATCCCAAGTTTTGTTGGGACTCATTCTCC 120
consensus_7501#1      ---------------GTTTCAAAGCGCTTTTATCCGATTCAGTAATTTGACTGAATTTTC 45
                                     * *       * ******** *     *  *  **** * * * *

consensus_7501#0      TGTCCCACCAAATCCTGGCAGTTTTTATTATACCAGAAGAGAACCATTTGGACTTTGTGC 180
consensus_7501#1      AACATCAGCAACCAGATGTCAACAATTTCAAATGAATTGTGAATCATTTCAAGA--GTGT 103
                           ** ***      *       * * * *  *   * *** *****  *    *** 

consensus_7501#0      TGGTATCGGAGCATGGAATTTTCCTTTTCAAATGGCTGTATGGAAATCTGTTCCTGC--- 237
consensus_7501#1      CGTAAACAGGCTATTGAAAGA--CTCCACAAATGGTTAAATAATAGTCAGCTTCCATTGA 161
                       *  * * *   ** ***     **   ******* *  **   * ** * * *      

consensus_7501#0      -GTTAGCTGCTGGAAATTCCTTCATATTTAAACCATCTCCTTTAACTCCATTAACAGCTA 296
consensus_7501#1      AATTTGCTGCAGGGGATACGAA-AGATCCAAGTTG-CAATTACGATTATACTAGTTATGA 219
                        ** ***** **  ** *    * **  **     *   *   * *  * **      *

consensus_7501#0      TTCGTTTATACGAATTGTATAAACTTGCTGGATGTCCTGAAAATCTTTACCAAGTTGTTC 356
consensus_7501#1      TCCGTCCACTTGGTTACCTTTGGTTCATTACAAACAAACAACATATTCAC-GACTTGATG 278
                      * ***  *   *  *    *    *   *  *       ** ** ** **  * *** * 

consensus_7501#0      TAGGAGGTGTTGAAATTGGTCAAGCATTAGTAAATCATCCTTTAGTTAGAAA--AGTATC 414
consensus_7501#1      AAATGGCTATTAACGCCTGTAAAGCACAA--AAGCAATGGATTGATTTACCATTACTAGA 336
                       *   * * ** *     ** *****  *  **   **   **  **    *  * **  

consensus_7501#0      ATTTACAGGAAGTGTTGCAGGAGGT--CGATCT-GTGCTTAAGTGCGCTGCTGAACGCAT 471
consensus_7501#1      ACGTGCCAAAATTCTTAGAAAAGTTGGTGATCTTGTTCGTGCTGAAACAGATTGGCTTGC 396
                      *  * *   ** * **  *  ** *   ***** ** * *       * * *   *    

consensus_7501#0      TATACCAAGTACACTTGAACTAGGCGGAAAATCACCATTAATTATAATGTCAGATGCTAA 531
consensus_7501#1      TGAATTAGAGACACTAGAT---ACTGGAAAGCCACTGTGGGAAGCTCGTGCAGACATTGA 453
                      *  *  *   ***** **       *****  ***  *            ****   * *

consensus_7501#0      --TTTAGATGAAGCTGTTAAAGGCACTTTGATGGCTAATTTTTATACTCAAGGACAAGTA 589
consensus_7501#1      GGCTTGTGCAGATTCATTTGAGCTATTT-----GCTGGTTTT---ATCCCAAGTTTTGTT 505
                         **      *    **  **  * **     ***  ****   *  * * *    ** 

consensus_7501#0      TGTTCTAATGCTGCTCGTGTATTTGTTCATAG-ATCTATTGCAGCACCATTCACTCAAAA 648
consensus_7501#1      GGGACTCATTCTCCTGTCCCACCAAATTCTGGCAGTTTTTATTATACCAGAAG----AGA 561
                       *  ** ** ** **     *     *  * * *  * **     ****        * *

consensus_7501#0      ACTTATTGAATCAGTTAAACCAATTTTAGNTCGTGATCCT- 688
consensus_7501#1      ACCATTTGGACT--TTGTGCTGGTATCGGAGCATGGAATTT 600
                      **   *** *    **   *   * *  *  * **    *