cluster # 7506

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Schistosoma mansoni
cluster # 7506 cluster # 7506 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7506#0 length = 603 sequences # 3

consensus_7506#1 length = 572 sequences # 2

consensusID : consensus_7506#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 603
fasta sequence

                              [CATCAAACTTGGAGGAAAGTTTTAAACATGAATGTGATTCCGATAAAGCTCCTGGTGTTGACGATCTCGTTACAGATAGAGGTAATAACAATATTGGTGTGGTTTTTATCAGGACAAATCGGAACCCTATCTGACAAAATTCTTCAAAGGGTCGATTCCTTACGTTATTCTAATATGTTGAGATTACAAATGAAACTCACCCATGAAAAACATACATCTCAAGTTTTCTCCCACCTACTCTACATGGTTTATTTGTCGTTATCTACAAATCTGAAAGTAGGCATATATCTGAAGACGTGTTTCTTCGATTAATTGTATTGTGTGGCGTATTTAACGGTACAGCTTTACTGTTACCTCTGTTGAGATTTCAAAAAAGTAAGATATTTCCATTTAGTGGACGGAATTTTCATTTTCGACCTCTCATCTTACTAAAGATTTACTGTGTACACCTTCTTTGACCACGTTTTTGTGGAAAACGTCCTTAGATTTGATTTTATTAGTCACCATAGTCGCTGACAAATGGAGCCATTCTTAAAGGATCAAAAATTATTCACGTCTCATTTAATACACATTATTTTTGCTTCAGTAGTATCAAATCGTCTC]

[+] EMBL CD165669             [CATCAAACTTGGAGGAAAGTTTTAAACATGAATGTGATTCCGATAAAGCTCCTGGTGTTGACGATCTCGTTACAGATAGAGGTAATAACAATATTGGTGTGGTTTTTATCAGGACAAATCGGAACCCTATCTGACAAAATTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD182352             [  TCAAACTTGGAGGAAAGTTTTAAACATGAATGTGACTCCGATAAAGCTCCTGGTGTTGACGATCTCGATACAGATAGAGGTAATAACAATATTGGTGTGGTTTTTATCAGGACAAATCGGAACCCTATCTGACAAAATTCTTCAAAGGGTCGATTCCTTACGTTATTCTAATATGTTGAGATTACAAATGAAACTCACCCATGAAAAACATACATCTCAAGTTTTCTCCCACCTACTCTACATGGTTTATTTGTCGTTATCTACAAATCTGAAAGTAGGCATATATCTG                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD154277             [                                 GTGATCCCGATAAAGCTCCTGGTGTTGACGATCTCGTTACAGATAGAGGTAATAACAATATTGGTGTGGTTTTTATCAGGACAAATCGGAACCCTATCTGACAAAATTCTTCAAAGGGTCGATTCCTTACGTTATTCTAATATGTTGAGATTACAAATGAAACTCACCCATGAAAAACATACATCTCAAGTTTTCTCCCACCTACTCTACATGGTTTATTTGTCGTTATCTACAAATCTGAAAGTAGGCATATATCTGAAGACGTGTTTCTTCGATTAATTGTATTGTGTGGCGTATTTAACGGTACAGCTTTACTGTTACCTCTGTTGAGATTTCAAAAAAGTAAGATATTTCCATTTAGTGGACGGAATTTTCATTTTCGACCTCTCATCTTACTAAAGATTTACTGTGTACACCTTCTTTGACCACGTTTTTGTGGAAAACGTCCTTAGATTTGATTTTATTAGTCACCATAGTCGCTGACAAATGGAGCCATTCTTAAAGGATCAAAAATTATTCACGTCTCATTTAATACACATTATTTTTGCTTCAGTAGTATCAAATCGTCTC]




>consensus_7506#0
CATCAAACTTGGAGGAAAGTTTTAAACATGAATGTGATTCCGATAAAGCTCCTGGTGTTG
ACGATCTCGTTACAGATAGAGGTAATAACAATATTGGTGTGGTTTTTATCAGGACAAATC
GGAACCCTATCTGACAAAATTCTTCAAAGGGTCGATTCCTTACGTTATTCTAATATGTTG
AGATTACAAATGAAACTCACCCATGAAAAACATACATCTCAAGTTTTCTCCCACCTACTC
TACATGGTTTATTTGTCGTTATCTACAAATCTGAAAGTAGGCATATATCTGAAGACGTGT
TTCTTCGATTAATTGTATTGTGTGGCGTATTTAACGGTACAGCTTTACTGTTACCTCTGT
TGAGATTTCAAAAAAGTAAGATATTTCCATTTAGTGGACGGAATTTTCATTTTCGACCTC
TCATCTTACTAAAGATTTACTGTGTACACCTTCTTTGACCACGTTTTTGTGGAAAACGTC
CTTAGATTTGATTTTATTAGTCACCATAGTCGCTGACAAATGGAGCCATTCTTAAAGGAT
CAAAAATTATTCACGTCTCATTTAATACACATTATTTTTGCTTCAGTAGTATCAAATCGT
CTC

consensusID : consensus_7506#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 572
fasta sequence

                              [GATGTGTTACCATAAGTTTCGACGCGTTTGAAAATTGAAGTGAAATGGAGATATCTATATTTGATCCTTGTTCTGGAATTAATTTTAAGACCGAAGAACCAGTTGAGTTAGATGACCCAGTTATGAAGTCATCACAGAAATCGGTCTCAAAAGATGTAAATGTTGTTCCTGAAAAAGATATAAAAGGTAGGCAACCACCATTATTATCATTATATTTGTGAAATTCGTATTTGCCCATCGACACTCGTCACTGGAAACTGACATTGGAAGACCGTAATTTTGGTAACCCTGCTGATGTTAACTTGGATGAGTTGGGAATTATACGAGACAATCAGTCATCAAACTTGGAGGAAAGTTTTAAACATGAATGTGATTCCGATAAAGCTCCTGGTGTTGACGATCTCGTTACAGATAGAGCTTCAAATGATCTACGATTACAAGTGTAAATATGATCCAATTTTTTGGTTGACTCTGCGCGTCAGTTTTTCACTAGAACTTCAAGAACTCAATCTCTCATAACTGCTCACTTAAAAGAAACTCTTCAAGTGTTCTGTATGTCATAATTGCTACAC]

[+] EMBL BF936204             [GATGTGTTACCATAAGTTTCGACGCGTTTGAAAATTGAAGTGAAATGGAGATATCTATATTTGATCCTTGTTCTGGAATTAATTTTAAGACCGAAGAACCAGTTGAGTTAGATGACCCAGTTATGAAGTCATCACAGAAATCGGTCTCAAAAGATGTAAATGTTGTTCCTGAAAAAGATATAAAAGGTAGGCAACCACCATTATTATCATTATATTTGTGAAATTCGTATTTGCCCATCGACACTCGTCACTGGAAACTGACATTGGAAGACCGTAATTTTGGTAACCCTGCTGATGTTAACTTGGATGAGTTGGGAATTATACGAGACAATCAGTCATCAAACTTGGAGGAAAGTTTTAAACATGAATGTGATTCCGATAAAGCTCCTGGTGTTGACGATCTCGTTACAGATAGAGCTTCAAATGATCTACGATTACAAGTGTAAATATGATCCAATTTTTTGGTTGACTCTGCGCGTCAGTTTTTCACTAGAACTTCAAGAACTCAATCTCTCATAACTGCTCACTTAAAAGAAACTCTTCAAGTGTTCTGTATGTCATAATTGCTACAC]
[+] EMBL AI976543             [GATGTGTTACCATAAGTTTCGACGCGTTTGAAAATTGAAGTGAAATGGAGATATCTATATTTGATCCTTGTTCTGGAATTAATTTTAAGACCGAAGAACCAGTTGAGTTAGATGACCCAGTTATGAAGTCATCACAGAAATCGGTCTCAAAAGATGTAAATGTTGTTCCTGAAAAAGATATAAAAGGTAGGCAACCACCATTATTATCATTATATTTGTGAAATTCGTATTTGCCCATCGACACTCGTCACTGGAAACTGACATTGGAAGACCGTAATTTTGGTAACCCTGCTGATGTTAACTTGGATGAGTTGGGAATTATACGAGACAATCAGTCATCAAACTTGGAGGAAAGTTTTAAACATGAATGTGATTCCGATAAAGCTCCTGGTGTTGACGATCTCGTTACAGATAGAGCTTCAAATGATCTACGATTACAAGTGTAAATATGATCCAATTTTTTGGTTGACTC                                                                                                    ]




>consensus_7506#1
GATGTGTTACCATAAGTTTCGACGCGTTTGAAAATTGAAGTGAAATGGAGATATCTATAT
TTGATCCTTGTTCTGGAATTAATTTTAAGACCGAAGAACCAGTTGAGTTAGATGACCCAG
TTATGAAGTCATCACAGAAATCGGTCTCAAAAGATGTAAATGTTGTTCCTGAAAAAGATA
TAAAAGGTAGGCAACCACCATTATTATCATTATATTTGTGAAATTCGTATTTGCCCATCG
ACACTCGTCACTGGAAACTGACATTGGAAGACCGTAATTTTGGTAACCCTGCTGATGTTA
ACTTGGATGAGTTGGGAATTATACGAGACAATCAGTCATCAAACTTGGAGGAAAGTTTTA
AACATGAATGTGATTCCGATAAAGCTCCTGGTGTTGACGATCTCGTTACAGATAGAGCTT
CAAATGATCTACGATTACAAGTGTAAATATGATCCAATTTTTTGGTTGACTCTGCGCGTC
AGTTTTTCACTAGAACTTCAAGAACTCAATCTCTCATAACTGCTCACTTAAAAGAAACTC
TTCAAGTGTTCTGTATGTCATAATTGCTACAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7506#0      CATCAAACTTGGAGGAAAGTTTTAAACATGAATGTGATTCCGATAAAGCTCCTGGTGTTG 60
consensus_7506#1      ----GATGTGTTACCATAAGTTTCGACGCGTTTGAAAATTGAAGTGAAATGGAGATATCT 56
                           *  *   *  * *  ***  **  *  **  * *   *   *  *   * * *  

consensus_7506#0      ACGATCTCGTTACAGATAGAGGTAATAACAATATTGGTGTGGTTTTTATCAGGACAAATC 120
consensus_7506#1      ATA--TTTGATCCTTGTTCTGGAATTAATTTTAAGACCGAAGAACCAGTTGAGTTAGAT- 113
                      *     * * * *   *   ** * ***   **     *  *      *   *  * ** 

consensus_7506#0      GGAACCCTATCTGACAAAATTCTTCAAAGGGTCGATTCCTTACGTTATTCTAATATGTTG 180
consensus_7506#1      --GACCCAGTT--ATGAAGTCATCACAGAAATCGGTCTCAAAAGATGT----AAATGTTG 165
                         ****  *   *  ** *  *   *    *** *  *  * * * *    * ******

consensus_7506#0      AGATTACAAATGAAACTCACCCATGAAAAACATACATCTCAAGTTTTCTCCCACCTACTC 240
consensus_7506#1      TTCCTGAAAAAGA--------TATAAAAGGTAGGCAAC-CACCATTATTATCATTATATT 216
                          *  *** **         ** ***   *  ** * **   **  *  **     * 

consensus_7506#0      TACATGGTTTATTTGTCGTTATCTACAAATCTGAAAGTAGGCATATATCTGAAGACGTGT 300
consensus_7506#1      TGTGAAATTCGTATTTGCCCATCGACACTCGTCACTGGAAACTGACATTGGAAGAC-CGT 275
                      *      **  * * *    *** ***    * *  * *  *  * **  ******  **

consensus_7506#0      TTCTTCGATTAATTGTATTGTGTGGCGTATTTAACGGTACAGCTTTACTGTTACCTCTGT 360
consensus_7506#1      AATTTTGGT-AACCCTGCTG-ATGTTAACTTGGATGAGTTGGGA--ATTATACGAGACAA 331
                         ** * * **   *  **  **     **  * *     *    * * *         

consensus_7506#0      TGAGATTTCAAAAAAGTAAGATATTTCCATTTAGTGGACGGAATTTTCATTTTCGACCTC 420
consensus_7506#1      TCAGTCATCAAACTTGGAGGAAAGTTTTAAACA-TGAATGTGATTCCGAT-----AAAGC 385
                      * **   *****   * * ** * **  *   * ** * *  ***   **     *   *

consensus_7506#0      TCATCTTACTAAAGATTT-ACTGTGTACACCTTCTTTGACCACGTTTTTGTGGAAAACGT 479
consensus_7506#1      TCCTGGTGTTGACGATCTCGTTACAGATAGAG-CTTCAAATGATCTACGATTACAAGTGT 444
                      ** *  *  * * *** *   *    * *    ***  *      *    *   **  **

consensus_7506#0      CCTTA-GATTTGATTTTATTAGTCACCATAGTCGCTGACAAATGGAGCCATTCTTAAAGG 538
consensus_7506#1      AAATATGATCCAATTTTTTGGTTGACTCTGCGCGTCAGTTTTTCACTAGAACTTCAAGAA 504
                         ** ***   ***** *   * **  *   **        *      *   * **   

consensus_7506#0      ATCAAAAATTATTCACGTCTCATTTAATACACATTATTTTTGC-TTCAGTAGTATCA-AA 596
consensus_7506#1      CTCAATCTCTCATAACTGCTCACTTAAAAGAAACTCTTCAAGTGTTCTGTA-TGTCATAA 563
                       ****    *  * **  **** **** * * * * **   *  *** *** * *** **

consensus_7506#0      TCGTCTC-- 603
consensus_7506#1      TTGCTACAC 572
                      * *   *