These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7507#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 334 fasta sequence [TCGAAGCATTGTTCGTGTCTCGTGAAGTGAGATAGTGGGAAATGTTGATGTTGGGCATAGAGTACAAGGTAAACGTGGCAAATCACTTGATACAATAGCTATGAATATAGATTGATTAAGGTATTTTTCTTATAAATATTCATGTATATTAGAGTAAAGCGTGATGACGATCTAATTGAAAACAATTGTTCGCTTACATGTTTTGTTCTGAGGTATTTAAGACATGTGTTGTGTGTGCCTATTCAGTGTTCACTTTGACTTGGAATGTTTGGCAGTGTAGAAGTAGGTGAGAATAAAGTTAAGGATGGTCAAACCAAGACATGTCAACCAATCC] [+] EMBL CD091893 [TCGAAGCATTGTTCGTGTCTCGTGAAGTGAGATAGTGGGAAATGTTGATGTTGGGCATAGAGTACAAGGTAAACGTGGCAAATCACTTGATACAATAGCTATGAATATAGATTGATTAAGGTATTTTTCTTATAAATATTCATGTATATTAGAGTAAAGCGTGATGACGATCTAATTGAAAACAATTGTTCGCTTACATGTTTTGTTCTGAGGTATTTAAGACATGTGTTGTGTGTGCCTATTCAGTGTTCACTTTGACTTGGAATGTTTGGCAGTGTAGAAGTAGGTGAGAATAAAGTTAAGGATGGTCAAACCAAGACATGTCAACCAATCC] consensusID : consensus_7507#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 305 fasta sequence [AAGAACAAAGGATTTAACAAAATAACTACTGATAAGACTTTTGTTATCGTAATTTAATATTCTTACTACTATGAGTACGTCTAGCTTCCCACTATCAACTTGTACTTTTACCTATTATGCTCGGTGATGTATTTTATTTCATTGTGATTATTGAGTCAAATAGCCTTGATTGGTTTAACATTTTCGTATAAATATTCATGTATATTAGAGTAAAGCCTGATGACGATCTCATTGAAAACAATTGATCGCTTACATGTATTGTCCTACTTTTCACAATGGGAATCTTTAATATTCTAAAATAATAT] [+] EMBL CD094071 [AAGAACAAAGGATTTAACAAAATAACTACTGATAAGACTTTTGTTATCGTAATTTAATATTCTTACTACTATGAGTACGTCTAGCTTCCCACTATCAACTTGTACTTTTACCTATTATGCTCGGTGATGTATTTTATTTCATTGTGATTATTGAGTCAAATAGCCTTGATTGGTTTAACATTTTCGTATAAATATTCATGTATATTAGAGTAAAGCCTGATGACGATCTCATTGAAAACAATTGATCGCTTACATGTATTGTCCTACTTTTCACAATGGGAATCTTTAATATTCTAAAATAATAT] consensusID : consensus_7507#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence [AACGACCGTCCAGTGTTCCCAGGTTTTCCACGATGGTCTACCTTCAATTGACTCATGATTTCAACTTTATACAAGAAATGAGAATATGTTTATGGATCAATACTTACTCTTTTATAATTACGTGATCTTAAATTACCTTAAATATATCACTAATGTTACATTATAATGAGTTGGATACTTTATTAGGATCATTTTTCACTATTCCTTCCGTTTGTATTCTTCACTAGCTAATTACTTACATACTTCTTATTACGTAATGATTTTAATGTTTTGTGATGACTAATCTAAGTCTA] [+] EMBL CD202581 [AACGACCGTCCAGTGTTCCCAGGTTTTCCACGATGGTCTACCTTCAATTGACTCATGATTTCAACTTTATACAAGAAATGAGAATATGTTTATGGATCAATACTTACTCTTTTATAATTACGTGATCTTAAATTACCTTAAATATATCACTAATGTTACATTATAATGAGTTGGATACTTTATTAGGATCATTTTTCACTATTCCTTCCGTTTGTATTCTTCACTAGCTAATTACTTACATACTTCTTATTACGTAATGATTTTAATGTTTTGTGATGACTAATCTAAGTCTA] consensusID : consensus_7507#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 234 fasta sequence [CTGTTTTTACTAGAATACATCACCAAGCCTGATAGGTAAAAGTACAAGTTGATAGTGGGAAGACAGGTGTACTGATAGTAGTAAGAATAGTAAATTACGATAACAAAAGTCTTATTCAATAATTAAACATAAGAATTAAGAGGTCAAACGTGGGTAAATAGACTAGAATAATAATCACAAAACATTAAAATCATTACGTGATAAGAAGTATGTAAGTAAATAGATAGTGAAGAA] [+] EMBL CD092315 [CTGTTTTTACTAGAATACATCACCAAGCCTGATAGGTAAAAGTACAAGTTGATAGTGGGAAGACAGGTGTACTGATAGTAGTAAGAATAGTAAATTACGATAACAAAAGTCTTATTCAATAATTAAACATAAGAATTAAGAGGTCAAACGTGGGTAAATAGACTAGAATAATAATCACAAAACATTAAAATCATTACGTGATAAGAAGTATGTAAGTAAATAGATAGTGAAGAA] consensusID : consensus_7507#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 222 fasta sequence [GAAGACAGGTGTACTGATAGTAGTAAGAATATTAAATTACGATAACAAAAGTCTTATCAATAGTTAAACATAGGAAATAAAAGGTCAAACGTGGGTAAATAGACTAGAATAGTATTCACGAAACGTTAAAATCATTACGTAGTAAGAAGTATGTAAGTAATTAGATAGTGAAGAATACAAACGGAAAGAGGTAGAAAATTACAAAAAATGATAACCAAAATA] [+] EMBL CD167120 [GAAGACAGGTGTACTGATAGTAGTAAGAATATTAAATTACGATAACAAAAGTCTTATCAATAGTTAAACATAGGAAATAAAAGGTCAAACGTGGGTAAATAGACTAGAATAGTATTCACGAAACGTTAAAATCATTACGTAGTAAGAAGTATGTAAGTAATTAGATAGTGAAGAATACAAACGGAAAGAGGTAGAAAATTACAAAAAATGATAACCAAAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7507#3 ------------CTGTTTTTACTAGAATACATCACCAAGCCTGATAGGTAAAAGTACAAG 48 consensus_7507#4 ------------------------------------------------------------ consensus_7507#0 TCGAAGCATTGTTCGTGTCTCGTGAAGTGAGATAGTGGGAAATGTTGATGTTGGGCATAG 60 consensus_7507#1 ----------------------AAGAACAAAGGATTTAACAAAATAACTACTGATAAGAC 38 consensus_7507#2 ---------AACGACCGTCCAGTGTTCCCAGGTTTTCCACGATGGTCTACCTTCAATTGA 51 consensus_7507#3 TTGATAGTGGGAA---GACAGGTGTACTGATA--GTAG-TAAGAATAGTAAATTACGATA 102 consensus_7507#4 ----------GAA---GACAGGTGTACTGATA--GTAG-TAAGAATATTAAATTACGATA 44 consensus_7507#0 AGTACAAGGTAAACGTGGCAAATCACTTGATACAATAGCTATGAATATAGATTGATTAAG 120 consensus_7507#1 TTTTGTTATCGTA--ATTTAATATTCTTACTACTATGAGTACGTCTAGCTTCCCACTATC 96 consensus_7507#2 CTCATGATTTCAACTTTATACAAGAAATGAGAATATGTTTATGGATCAATACTTACTCTT 111 * * * * * ** * * * consensus_7507#3 ACAAAAGTCTTATTCAATAATTAAACATAAGAATTAAGAGGTCAAACGTGGGTAA-ATAG 161 consensus_7507#4 ACAAAAGTCTTAT-CAATAGTTAAACATAGGAAATAAAAGGTCAAACGTGGGTAA-ATAG 102 consensus_7507#0 GTATTTTTCTTAT-AAATATTCATGTATATTAGAGTAAAGCGTGATGACGATCTA-ATTG 178 consensus_7507#1 AACTTGTACTTTT--ACCTATTATGCTCGGTGATGTATTTTATTTCATTGTGATT-ATTG 153 consensus_7507#2 ---TTATAATTACGTGATCTTAAATTACCTTAAATATATCACTAATGTTACATTATAATG 168 ** * * * * consensus_7507#3 ACTAGAATAATAATCACAAAACATTAAAATCATTACGTGAT-AAGAAGTATGTAA---GT 217 consensus_7507#4 ACTAGAATAGTATTCACGAAACGTTAAAATCATTACGTAGT-AAGAAGTATGTAA---GT 158 consensus_7507#0 AAAACAATTGTTCGC-TTACATGTTTTGTTC-TGAGGTATTTAAGACATGTGTTGTGTGT 236 consensus_7507#1 AGTCAAATAGCCTTGATTG-GTTTAACATTTTCGTATAAATATTCATGTATATTA---GA 209 consensus_7507#2 AGTTGGATA--CTTTATTAGGATCATTTTTCACTATTCCTT--CCGTTTGTATTC---TT 221 * ** * * * * * consensus_7507#3 AAATAGATAGTGAAGAA------------------------------------------- 234 consensus_7507#4 AATTAGATAGTGAAGAATACAAACGGAAAGAGGTAGAAAATTACAAAAAA-TGATAACCA 217 consensus_7507#0 GCCTATTCAGTGTTCACTTTGACTTGGAATGTTTGGCAGTGTAGAAGTAG-GTGAGAATA 295 consensus_7507#1 GTAAAGCCTGATGACGATCTCATTGAAAACAATTGATCGCTTACATGTA---TTGTCCTA 266 consensus_7507#2 CACTAGCTAATTACTTACATACTTCTTATTACGTAATGATTTTAATGTTTTGTGATGACT 281 * consensus_7507#3 --------------------------------------- consensus_7507#4 AAATA---------------------------------- 222 consensus_7507#0 AAGTTAAGGATGGTCAAACCAAGACATGTCAACCAATCC 334 consensus_7507#1 CTTTTCACAATGGGAATCTTTAATATTCTAAAATAATAT 305 consensus_7507#2 AATCTAAGTCTA--------------------------- 293 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||