cluster # 7511

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7511 cluster # 7511 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7511#0 length = 408 sequences # 2

consensus_7511#1 length = 230 sequences # 2
consensus_7511#2 length = 119 sequences # 1

consensusID : consensus_7511#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 408
fasta sequence

                              [ACAATTTAGGCTTGTTTGTATTCTTCTGGAAGTTTATTCGCTCTCGTGGTGGAGTGAAGAGTTATCTCAATATCTTTGACCCTGAACGTGACTCAAAGTTGGATCCTGCAGCTGTTCTATATCCTATGTTCGTATGCAATTTTGTTGGTATTGTTATCAGCCGTTCGTTGCATTACCAGTTCTACGTTTGGTATTTTCATACAATTCCGTATTTATTGTGGTGTGTTAAACGTTTTTCCACTCCTGTGAAGCTATTAATTCTTGGTCTTATTGAAATCAGGTGGAACACTTATCCATCAACAATTTTGAGTAGTGGTTTACTAAATTTATGCCACTTAACATTGCTAGTTGGATTAATTATGGAATTAGTGCCAATTAGATTAACCTCATTACAGGTCAAAAAAGAAG]

[+] EMBL CD133691             [ACAATTTAGGCTTGTTTGTATTCTTCTGGAAGTTTATTCGCTCTCGTGGTGGAGTGAAGAGTTATCTCAATATCTTTGACCCTGAACGTGACTCAAAGTTGGATCCTGCAGCTGTTCTATATCCTATGTTCGTATGCAATTTTGTTGGTATTGTTATCAGCCGTTCGTTGCATTACCAGTTCTACGTTTGGTATTTTCATACAATTCCGTATTTATTGTGGTGTGTTAAACGTTTTTCCACTCCTGTGAAGCTATTAATTCTTGGTCTTATTGAAATCAGGTGGAACACTTATCCATCAACAATT                                                                                                       ]
[-] EMBL CD143513             [                                                                                                                                                                                                                                          TTTCCACTCCTGTGAAGCTATTAATTCTTGGTCTTATTGAAATCAGTTGGAACACTTATCCATCAACAATTTTGAGTAGTGGTTTACTAAATTTATGCCACTTAACATTGCTAGTTGGATTAATTATGGAATTAGTGCCAATTAGATTAACCTCATTACAGGTCAAAAAAGAAG]




>consensus_7511#0
ACAATTTAGGCTTGTTTGTATTCTTCTGGAAGTTTATTCGCTCTCGTGGTGGAGTGAAGA
GTTATCTCAATATCTTTGACCCTGAACGTGACTCAAAGTTGGATCCTGCAGCTGTTCTAT
ATCCTATGTTCGTATGCAATTTTGTTGGTATTGTTATCAGCCGTTCGTTGCATTACCAGT
TCTACGTTTGGTATTTTCATACAATTCCGTATTTATTGTGGTGTGTTAAACGTTTTTCCA
CTCCTGTGAAGCTATTAATTCTTGGTCTTATTGAAATCAGGTGGAACACTTATCCATCAA
CAATTTTGAGTAGTGGTTTACTAAATTTATGCCACTTAACATTGCTAGTTGGATTAATTA
TGGAATTAGTGCCAATTAGATTAACCTCATTACAGGTCAAAAAAGAAG

consensusID : consensus_7511#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 230
fasta sequence

                              [ATATATGGACAGTCAACTGGAGATTTTTGCCAGAAAGTGTATTTTTGGATAGGCGAGTTCATGCGATTCAACTAATCTTGCATTTGTGTATGTTGTTTGTATTCTTCTGGAAGTTTATTCGCTCTCGTGGTGGAGTGAAGAGTTATCTCAATATCTTTGACCCTGAACGTGACTCAAAGTTGGATCCTGCAGCTGTTCTATATCCTATGTTCGTATGCAATTTTGTTGGT]

[-] EMBL CD158633             [ATATATGGACAGTCAACTGGAGATTTTTGCCAGAAAGTGTATTTTTGGATAGGCGAGTTCATGCGATTCAACTAATCTTGCATTTGTGTATGTTGTTTGTATTCTTCTGGAAGTTTATTCGCTCTCGTGGTGGAGTGAAGAGTTATCTCAATATCTTTGACCCTGAACGTGACTCAAAGTTGGATCCTGCAGCTGTTCTATATCCTATGTTCGTATGCAATTTTGTTGGT]
[-] EMBL CD158892             [ATATATGGACAGTCAACTGGAGATTTTTGCCAGAAAGTGTATTTTTGGATAGGCGATTTCATGCGATTCTACTAATCTTGCATTTGTGTATGTTGTTTGTATTCTTCTGGAAGTTTATTCGCTCTCGTGGTGGAGTGAAGAGTTATCTCAATATCTTTGACCCTGAACGTGACTCAAAGTTGGATCCTGCAGCTGTTCTATATCCTATGTTCGTATGCAATTTTGTTGGT]




>consensus_7511#1
ATATATGGACAGTCAACTGGAGATTTTTGCCAGAAAGTGTATTTTTGGATAGGCGAGTTC
ATGCGATTCAACTAATCTTGCATTTGTGTATGTTGTTTGTATTCTTCTGGAAGTTTATTC
GCTCTCGTGGTGGAGTGAAGAGTTATCTCAATATCTTTGACCCTGAACGTGACTCAAAGT
TGGATCCTGCAGCTGTTCTATATCCTATGTTCGTATGCAATTTTGTTGGT

consensusID : consensus_7511#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 119
fasta sequence

                              [ATATTCATTATAGTCTTATATTACAATATTTCATTATCACCTTTGTAGCTCTCGTGATGAAGTGAAGAGTTATCTCAATATCTTTGACCCTGAACGTGACTCAGAGATGGATCCTGCAG]

[+] EMBL CD195959             [ATATTCATTATAGTCTTATATTACAATATTTCATTATCACCTTTGTAGCTCTCGTGATGAAGTGAAGAGTTATCTCAATATCTTTGACCCTGAACGTGACTCAGAGATGGATCCTGCAG]




>consensus_7511#2
ATATTCATTATAGTCTTATATTACAATATTTCATTATCACCTTTGTAGCTCTCGTGATGA
AGTGAAGAGTTATCTCAATATCTTTGACCCTGAACGTGACTCAGAGATGGATCCTGCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7511#0      ------------------------------------------------------------
consensus_7511#1      ATATATGGACAGTCAACTGGAGATTTTTGCCAGAAAGTGTATTTTTGGATAGGCGAGTTC 60
consensus_7511#2      ------------------------------------------------------------
                                                                                  

consensus_7511#0      ------------------ACAATTTAGGC---TTGTTT--GTATTCTTCTGGAAGTTTAT 37
consensus_7511#1      ATGCGATTCAACTAATCTTGCATTTGTGTATGTTGTTT--GTATTCTTCTGGAAGTTTAT 118
consensus_7511#2      ---------------ATATTCATTATAGTCTTATATTACAATATTTCATTATCACCTTTG 45
                                           ***   *     * **    ****    *   *  **  

consensus_7511#0      TCGCTCTCGTGGTGGAGTGAAGAGTTATCTCAATATCTTTGACCCTGAACGTGACTCAAA 97
consensus_7511#1      TCGCTCTCGTGGTGGAGTGAAGAGTTATCTCAATATCTTTGACCCTGAACGTGACTCAAA 178
consensus_7511#2      TAGCTCTCGTGATGAAGTGAAGAGTTATCTCAATATCTTTGACCCTGAACGTGACTCAGA 105
                      * ********* ** ******************************************* *

consensus_7511#0      GTTGGATCCTGCAGCTGTTCTATATCCTATGTTCGTATGCAATTTTGTTGGTATTGTTAT 157
consensus_7511#1      GTTGGATCCTGCAGCTGTTCTATATCCTATGTTCGTATGCAATTTTGTTGGT-------- 230
consensus_7511#2      GATGGATCCTGCAG---------------------------------------------- 119
                      * ************                                              

consensus_7511#0      CAGCCGTTCGTTGCATTACCAGTTCTACGTTTGGTATTTTCATACAATTCCGTATTTATT 217
consensus_7511#1      ------------------------------------------------------------
consensus_7511#2      ------------------------------------------------------------
                                                                                  

consensus_7511#0      GTGGTGTGTTAAACGTTTTTCCACTCCTGTGAAGCTATTAATTCTTGGTCTTATTGAAAT 277
consensus_7511#1      ------------------------------------------------------------
consensus_7511#2      ------------------------------------------------------------
                                                                                  

consensus_7511#0      CAGGTGGAACACTTATCCATCAACAATTTTGAGTAGTGGTTTACTAAATTTATGCCACTT 337
consensus_7511#1      ------------------------------------------------------------
consensus_7511#2      ------------------------------------------------------------
                                                                                  

consensus_7511#0      AACATTGCTAGTTGGATTAATTATGGAATTAGTGCCAATTAGATTAACCTCATTACAGGT 397
consensus_7511#1      ------------------------------------------------------------
consensus_7511#2      ------------------------------------------------------------
                                                                                  

consensus_7511#0      CAAAAAAGAAG 408
consensus_7511#1      -----------
consensus_7511#2      -----------