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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7512#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 644 fasta sequence
[CGGATCTGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAACCTGTTCGCAAAACATCTCTAGTGGAAGCCACACAGTTCGTGAAACGTTCCACTGTCGACCGACAAATCGACACAGTACCAGTCTCCTCGTCCGACGTGGGTGCACAGACCGAGCCACACAAATCTCTACTCGACGGTGCTGCCCATTTGTCGTTGAAACGCACCGATGCGACGTCACAAGCCAAACCTGTCCAATTGTGCATGGTGGATTCTTGGAGTGAGATACATGCACCAGTTGTTCCAGTCCAGCAGCCACCGAAACCCATCCAAACATTGGAAGCCTGTGTGCAGACGGTGAAGGAAAGTGTGTGTGTTGTGGATAGTGCGACCAGTGTGTCAGTGAAGTCGCCCGAAAGTGTGCTTGATTCGACTGCAGCTTTCGTGAAGAGACCGAATGTGAATACTGAAGTGCAAGTGGATAGGGTGAGCACACCGGTTGTCAGTCTGACCACACACAAGTTAGAACGGGAAGTGGTCGAGAGGAGTCTGTGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTNCTGTGACTGTGACTNGTGGAAATGNCCACG]
[+] EMBL CD168829 [CGGATCTGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAACCTGTTCGCAAAACATCTCTAGTGGAAGCCACACAGTTCGTGAAACGTTCCACTGTCGACCGACAAATCGACACAGTACCAGTCTCCTCGTCCGACGTGGGTGCACAGACCGAGCCACACAAATCTCTACTCGACGGTGCTGCCCATTTGTCGTTGAAACGCACCGATGCGACGTCACAAGCCAAACCTGTCCAATTGTGCATGGTGGATTCTTGGAGTGAGATACATGCACCAGTTGTTCCAGTCCAGCAGCCACCGAAACCCATCCAAACATTGGAAGCCTGTGTGCAGACGGTGAAGGAAAGTGTGTGTGTTGTGGATAGTGCGACCAGTGTGTCAGTGAAGTCGCCCGAAAGTGTGCTTGATTCGACTGCAGCTTTCGTGAAGAGACCGAATGTGAATACTGAAGTGCAAGTGGATAGGGTGAGCACACCGGTTGTCAGTCTGACCACA ]
[-] EMBL CD065987 [ CATGGTGGATTCTTGGAGTGAGATACATGCACCAGTTGTTCCAGTCCAGCAGCCACCGAAACCCATCCAAACATTGGAAGCCTGTGTGCAGACGGTGAAGGAAAGTGTGTGTGTTGTGGATAGTGCGACCAGTGTGTCAGTGAAGTCGCCCGAAAGTGTGCTTGATTCGACTGCAGCTTTCGTGAAGAGACCGAATGTGAATACTGAAGTGCAAGTGGATAGGGTGAGCACACCGGTTGTCAGTCTGACCACACACAAGTTAGAACGGGAAGTGGTCGAGAGGAGTCTGTGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTNCTGTGACTGTGACTNGTGGAAATGNCCACG]
consensusID : consensus_7512#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 616 fasta sequence
[GTTGTTCCAGTCCAGGAGCCACCGAAACCCATCCAAACATTGGAAGCCTGTGTGCAGACGGTGAAGGAAAGTGTGTGTGTTGTGGATAGTGCGACCAGTGTGTCAGTGAAGTCGCCCGAAAGTGTGCTTGATTCGACTGCAGCTTTCGTGAAGAGACCGAATGTGAATGCTGAAGTGCAAGTGGATAGGGTGAGCACACCGGTTGTCAGTCTGACCACACACAAGTTAGAACGGGAAGTGGTCGAGAGGAGTCTGTGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTCCAGCCTAAGATCGAACCTGTTCGCAAAACATCTCTAGTGGAAGCCACACAGTTCGTGAAACGTTCCACTGTCGACCAACAAATCGACACAGTACCAGTCTCCTCGTCCGACGTGGGTGCACAGACCGAGCCACACAAATCTCTACTCGACGGTGCTGCCCATTTGTCGTTGAAACGCACCGATGCGACGTCACAAGCCAGACCTGTCCAATTGTGCACGGTGGCTGCTGGACTGGAACAACTGGTGCATGTATCTCACTCCAAGAATCCACCATGCACAATTGGACAGTTTTGTCCGTTGAACC]
[-] EMBL CD147211 [GTTGTTCCAGTCCAGGAGCCACCGAAACCCATCCAAACATTGGAAGCCTGTGTGCAGACGGTGAAGGAAAGTGTGTGTGTTGTGGATAGTGCGACCAGTGTGTCAGTGAAGTCGCCCGAAAGTGTGCTTGATTCGACTGCAGCTTTCGTGAAGAGACCGAATGTGAATGCTGAAGTGCAAGTGGATAGGGTGAGCACACCGGTTGTCAGTCTGACCACACACAAGTTAGAACGGGAAGTGGTCGAGAGGAGTCTGTGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTCCAGCCTAAGATCGAACCTGTTCGCAAAACATCTCTAGTGGAAGCCACACAGTTCGTGAAACGTTCCACTGTCGACCAACAAATCGACACAGTACCAGTCTCCTCGTCCGACGTGGGTGCACAGACCGAGCCACACAAATCTCTACTCGACGGTGCTGCCCATTTGTCGTTGAA ]
[-] EMBL CD060247 [ TCTCCTCGTCCGACGTGGGTGCACAGACCGAGCCACACAAATCTCTACTCGACGGTGCTGCCCATTTGTCGTTGAAACGCACCGATGCGACGTCACAAGCCAGACCTGTCCAATTGTGCACGGTGGCTGCTGGACTGGAACAACTGGTGCATGTATCTCACTCCAAGAATCCACCATGCACAATTGGACAGTTTTGTCCGTTGAACC]
consensusID : consensus_7512#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence
[TTTCATGAAACAGTGAGGCGGATGGGATTATTGACATAACGTTTGGTGTTTCATTTGATAAGACAGGTTGCTGTAGTTGAGCAGAGGCTTCATCAGCAACACTGGGACAATCCTGTGTTGCAGTATCATCTCCAGTAGAATCTGGAAGTGAGGAAGATAGATTAGTACATAAGTCATGATACTGAGAGAAGGACTCAAGGGTAGTTTGACTTAACTGAGGTTGATGGTGATGGTGATAATAATTTACAGGAGTAGATGGGTGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAGGGCGTATTTGAAGGTGAGACGGAAGCCGAGTCGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAACCGGACGCAAAAAGTG]
[+] EMBL CD144250 [TTTCATGAAACAGTGAGGCGGATGGGATTATTGACATAACGTTTGGTGTTTCATTTGATAAGACAGGTTGCTGTAGTTGAGCAGAGGCTTCATCAGCAACACTGGGACAATCCTGTGTTGCAGTATCATCTCCAGTAGAATCTGGAAGTGAGGAAGATAGATTAGTACATAAGTCATGATACTGAGAGAAGGACTCAAGGGTAGTTTGACTTAACTGAGGTTGATGGTGATGGTGATAATAATTTACAGGAGTAGATGGGTGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAGGGCGTATTTGAAGGTGAGACGGAAGCCGAGTCGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAACCGGACGCAAAAAGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7512#0 CGGATCTGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAACCTGTTCGCAAAAC 60
consensus_7512#1 ------------------------------------------------------------
consensus_7512#2 ------------------------------------------------------------
consensus_7512#0 ATCTCTAGTGGAAGCCACACAGTTCGTGAAACGTTCCACTGTCGACCGACAAATCGACAC 120
consensus_7512#1 ------------------------------------------------------------
consensus_7512#2 ------------------------------------------------------------
consensus_7512#0 AGTACCAGTCTCCTCGTCCGACGTGGGTGCACAGACCGAGCCACACAAATCTCTACTCGA 180
consensus_7512#1 ------------------------------------------------------------
consensus_7512#2 ------------------------------------------------------------
consensus_7512#0 CGGTGCTGCCCATTTGTCGTTGAAACGCACCGATGCGACGTCACAAGCCAAACCTGTCCA 240
consensus_7512#1 ------------------------------------------------------------
consensus_7512#2 --------------------------------------------------------TTTC 4
consensus_7512#0 ATTGTGCATGGTGGATTCTTGGAGTGAGATACATGCACCAGTTGTTCCAGTCCAGCAGCC 300
consensus_7512#1 ----------------------------------------GTTGTTCCAGTCCAGGAGCC 20
consensus_7512#2 ATGAAACAGTGAGGCGGATGGGATTATTGACATAACGTTTGGTGTTTCATTTGATAAGAC 64
* **** ** * * ** *
consensus_7512#0 ACCGAAACCCATCCAAACATTGGAAGCCTGTGTGCAGACGGTGAAGGAAAGTGTGTGTGT 360
consensus_7512#1 ACCGAAACCCATCCAAACATTGGAAGCCTGTGTGCAGACGGTGAAGGAAAGTGTGTGTGT 80
consensus_7512#2 AGGTTGCTGTAGTTGAGCA---GAGGCTTCATCAGCAACACTG--GGACAATCC-TGTGT 118
* * * ** ** ** * ** ** *** * * *****
consensus_7512#0 TGTGGATAGTGCGACCAGTGTGTCAGTGAAGTCGCCCGAAAGTGTGCTTGATTCGACTGC 420
consensus_7512#1 TGTGGATAGTGCGACCAGTGTGTCAGTGAAGTCGCCCGAAAGTGTGCTTGATTCGACTGC 140
consensus_7512#2 TGC----AGTATCATCT-----CCAGTAGAAT---CTGGAAGTGAGGAAGATA-GATTAG 165
** *** * * **** * * * * ***** * *** ** *
consensus_7512#0 AGCTTTCGTGAAGAGACCGAATGTGAATACTGAAGTGCAAGTGGA-TAGGGTGAGCACAC 479
consensus_7512#1 AGCTTTCGTGAAGAGACCGAATGTGAATGCTGAAGTGCAAGTGGA-TAGGGTGAGCACAC 199
consensus_7512#2 TACATAAGTCATGATACTGAGAG-AAGGACTCAAGGGTAGTTTGACTTAACTGAGGTTGA 224
* * ** * ** ** ** * * ** *** * * * ** * ****
consensus_7512#0 CGGTTGTCAGTCTGACCACACACAAGT-TAGAACGGGAAGTGGTCGAGA-GGAGTCTGTG 537
consensus_7512#1 CGGTTGTCAGTCTGACCACACACAAGT-TAGAACGGGAAGTGGTCGAGA-GGAGTCTGTG 257
consensus_7512#2 TGGTGATGGTGATAATAATTTACAGGAGTAGATGGGTGTGTCGGTGAGATGGAGGCGGAA 284
*** * * * * *** * **** ** ** * **** **** * *
consensus_7512#0 TACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCC 597
consensus_7512#1 TACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTCCAGCC 317
consensus_7512#2 TA-----TGGTGAAGTTGGTGAGGGCGTATTTGAAGGTGAGACGG--AAGCCG---AGTC 334
** ** ** * *** * * ** * * * * ** *** ** *
consensus_7512#0 TAAGATCGAACCGGTTNCTGTGACTGTGACTNGTGGAAATGNCCACG------------- 644
consensus_7512#1 TAAGATCGAACCTGTTCGCAAAAC-ATCTCTAGTGGAAGCCACACAGTTCGTGAAACGTT 376
consensus_7512#2 GGCAGTCGAAGTGTTCGGTGAGAC----ATTGGGGCAAGTTGAACCGGACGCAAAAAGTG 390
***** * ** * * * ** *
consensus_7512#0 ------------------------------------------------------------
consensus_7512#1 CCACTGTCGACCAACAAATCGACACAGTACCAGTCTCCTCGTCCGACGTGGGTGCACAGA 436
consensus_7512#2 ------------------------------------------------------------
consensus_7512#0 ------------------------------------------------------------
consensus_7512#1 CCGAGCCACACAAATCTCTACTCGACGGTGCTGCCCATTTGTCGTTGAAACGCACCGATG 496
consensus_7512#2 ------------------------------------------------------------
consensus_7512#0 ------------------------------------------------------------
consensus_7512#1 CGACGTCACAAGCCAGACCTGTCCAATTGTGCACGGTGGCTGCTGGACTGGAACAACTGG 556
consensus_7512#2 ------------------------------------------------------------
consensus_7512#0 ------------------------------------------------------------
consensus_7512#1 TGCATGTATCTCACTCCAAGAATCCACCATGCACAATTGGACAGTTTTGTCCGTTGAACC 616
consensus_7512#2 ------------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||