cluster # 7520

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Schistosoma mansoni
cluster # 7520 cluster # 7520 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7520#0 length = 815 sequences # 3

consensus_7520#1 length = 277 sequences # 2

consensusID : consensus_7520#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 815
fasta sequence

                              [GTGAGTACATATGAAATACTTAAATTTGACGATGTTCGTGAGTTCAAAAATGGAAAAAAGAAGATCAAATATTCAATGGCAGGCGAGACGTCCTTGTATAATAGTCCTGTGGTTACCTTATATCTGTACGATATGAAAACTATGAACTTTCAAGTAATTCCGCGACCTAAACAAATTCCTAGTGATGGATTACTGACAATGGCGCTCTGGATGAATGATGACATTTTTGTACATGCATGGACTAACCGTATTCAGAATCGTGGTTGGATAACCGTCTTCAGTCAATCTCTGAATCAAAGTTGGG-TTTTTTTTAAAATTGGTTATGAAACTGGATGGGTGGATTTGTTAAAGCACACTAATGTGGAGCCTATAATTAACAAAGACAATCAAGAAATGCTAATTATACTTCCAAGAGATTATTCAGAAAAAGGGTATAGGGGTATAGCGAAACTAAAAATTCCAATATTACCGTCAGAGACTCTTCAATTACCCAATTGGATTATTACGCCGAATTTTGATGTGAAGGAAATACTACATTATGATGGTAATGATGAAGTCATTTTTATTGGAACAGGACCTGACTCCAAAAACTCTCATGTTTATTGGACTTCACAATCCAGAGGTAATATGACTTGTCTTACTTGTGAAAATGTGAATAATACATATAATTGGGCAGAAGTTCTGGCAAACGGAAAGTATTTAGTTCAAGATGTTCGAGGCTCGGGTACTCCCAAAACTTTTCTAAAAAGAATTATTAGGAATTTTACAGAAACGAATAATTTCACGGTTACCACAGAAATAATCAAGTATTTTGT]

[+] EMBL CD170572             [GTGAGTACATATGAAATACTTAAATTTGACGATGTTCGTGAGTTCAAAAATGGAAAAAAGAAGATCAAATATTCAATGGCAGGCGAGACGTCCTTGTATAATAGTCCTGTGGTTACCTTATATCTGTACGATATGAAAACTATGAACTTTCAAGTAATTCCGCGACCTAAACAAATTCCTAGTGATGGATTACTGACAATGGCGCTCTGGATGAATGATGACATTTTTGTACATGCATGGACTAACCGTATTCAGAATCGTGGTTGGATAACCGTCTTCAGTCAATCTCTGAATCAAAGTTGGG TTTTTTTTAAAATTGGTTATGAAACTGGATGGGTGGATTTGTTAAAGCACACTAATGTGGAGCCTATAATTAACAAAGACAATCAAGAAATGCTAATTATACTTCCAAGAGATTATTCAGAAAAAGGGTAT                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD097640             [                                                                                                                                                     cCAAGTAATTCCGCGACCTAAACAAATTCCTAGTGATGGATTACTGACAATGGCGCTCTGGATGAATGATGACATTTTTGTACATGCATGGACTAACCGTATTCAGAATCGTGGTTGGATAACCGTCTTCAGTCAATCTCTGAATCAAAGTTGGGTTTTTTTTTAAAATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD123993             [                                                                                                                                                                                                                                                                                                                                                   GGATTTGTTAAAGCAGACTAATGTGGAGCCTATAATTAACAAAGAGAATCAAGAAATGTTAATTATACTTCCAAGAGATTATTCAGAAAAAGGGTATAGGGGTATAGCGAAACTAAAAATTCCAATATTACCGTCAGAGACTCTTCAATTACCCAATTGGATTATTACGCCGAATTTTGATGTGAAGGAAATACTACATTATGATGGTAATGATGAAGTCATTTTTATTGGAACAGGACCTGACTCCAAAAACTCTCATGTTTATTGGACTTCACAATCCAGAGGTAATATGACTTGTCTTACTTGTGAAAATGTGAATAATACATATAATTGGGCAGAAGTTCTGGCAAACGGAAAGTATTTAGTTCAAGATGTTCGAGGCTCGGGTACTCCCAAAACTTTTCTAAAAAGAATTATTAGGAATTTTACAGAAACGAATAATTTCACGGTTACCACAGAAATAATCAAGTATTTTGT]




>consensus_7520#0
GTGAGTACATATGAAATACTTAAATTTGACGATGTTCGTGAGTTCAAAAATGGAAAAAAG
AAGATCAAATATTCAATGGCAGGCGAGACGTCCTTGTATAATAGTCCTGTGGTTACCTTA
TATCTGTACGATATGAAAACTATGAACTTTCAAGTAATTCCGCGACCTAAACAAATTCCT
AGTGATGGATTACTGACAATGGCGCTCTGGATGAATGATGACATTTTTGTACATGCATGG
ACTAACCGTATTCAGAATCGTGGTTGGATAACCGTCTTCAGTCAATCTCTGAATCAAAGT
TGGGTTTTTTTTAAAATTGGTTATGAAACTGGATGGGTGGATTTGTTAAAGCACACTAAT
GTGGAGCCTATAATTAACAAAGACAATCAAGAAATGCTAATTATACTTCCAAGAGATTAT
TCAGAAAAAGGGTATAGGGGTATAGCGAAACTAAAAATTCCAATATTACCGTCAGAGACT
CTTCAATTACCCAATTGGATTATTACGCCGAATTTTGATGTGAAGGAAATACTACATTAT
GATGGTAATGATGAAGTCATTTTTATTGGAACAGGACCTGACTCCAAAAACTCTCATGTT
TATTGGACTTCACAATCCAGAGGTAATATGACTTGTCTTACTTGTGAAAATGTGAATAAT
ACATATAATTGGGCAGAAGTTCTGGCAAACGGAAAGTATTTAGTTCAAGATGTTCGAGGC
TCGGGTACTCCCAAAACTTTTCTAAAAAGAATTATTAGGAATTTTACAGAAACGAATAAT
TTCACGGTTACCACAGAAATAATCAAGTATTTTGT

consensusID : consensus_7520#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 277
fasta sequence

                              [GTTCTACACCTTTTCTTCATGATATATACTAGCTTTTGTCAACATTTTTATAAAGCAAAGTAAAATCATTTTATTTCCAGCCAATATTACCGTCAGAAACTCTTCAATTACCCAATTGGATTATTACGCCGAATTTTGATGTGAAGGAAATACTACATTATGATGGTAATGATGAAGTCATTTTTATTGGAACAGGACCTGACTCCAAAAACTCTCATGTTTATTGGTAAGTGGGAATATTTAATTATGGGATGCAGGCCAAGTAAATGTAAAGACA]

[+] EMBL CD114943             [GTTCTACACCTTTTCTTCATGATATATACTAGCTTTTGTCAACATTTTTATAAAGCAAAGTAAAATCATTTTATTTCCAGCCAATATTACCGTCAGAAACTCTTCAATTACCCAATTGGATTATTACGCCGAATTTTGATGTGAAGGAAATACTACATTATGATGGTAATGATGAAGTCATTTTTATTGGAACAGGACCTGACTCCAAAAACTCTCATGTTTATTGGTAAGTGGGAATATTTAATTATGGGATGCAGGCCAAGTAAATGTAAAGAC ]
[-] EMBL CD114942             [ TTCTACACCTTTTCTTCATGATATATACTAGCTTTTGTCAACATTTTTATAAAGCAAAGTAAAATCATTTTATTTCCAGCCAATATTACCGTCAGAAACTCTTCAATTACCCAATTGGATTATTACGCCGAATTTTGATGTGAAGGAAATACTACATTATGATGGTAATGATGAAGTCATTTTTATTGGAACAGGACCTGACTCCAAAAACTCTCATGTTTATTGGTAAGTGGGAATATTTAATTATGGGATGCAGGCCAAGTAAATGTAAAGACA]




>consensus_7520#1
GTTCTACACCTTTTCTTCATGATATATACTAGCTTTTGTCAACATTTTTATAAAGCAAAG
TAAAATCATTTTATTTCCAGCCAATATTACCGTCAGAAACTCTTCAATTACCCAATTGGA
TTATTACGCCGAATTTTGATGTGAAGGAAATACTACATTATGATGGTAATGATGAAGTCA
TTTTTATTGGAACAGGACCTGACTCCAAAAACTCTCATGTTTATTGGTAAGTGGGAATAT
TTAATTATGGGATGCAGGCCAAGTAAATGTAAAGACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7520#0      GTGAGTACATATGAAATACTTAAATTTGACGATGTTCGTGAGTTCAAAAATGGAAAAAAG 60
consensus_7520#1      ------------------------------------------------------------
                                                                                  

consensus_7520#0      AAGATCAAATATTCAATGGCAGGCGAGACGTCCTTGTATAATAGTCCTGTGGTTACCTTA 120
consensus_7520#1      ------------------------------------------------------------
                                                                                  

consensus_7520#0      TATCTGTACGATATGAAAACTATGAACTTTCAAGTAATTCCGCGACCTAAACAAATTCCT 180
consensus_7520#1      ------------------------------------------------------------
                                                                                  

consensus_7520#0      AGTGATGGATTACTGACAATGGCGCTCTGGATGAATGATGACATTTTTGTACATGCATGG 240
consensus_7520#1      ------------------------------------------------------------
                                                                                  

consensus_7520#0      ACTAACCGTATTCAGAATCGTGGTTGGATAACCGTCTTCAGTCAATCTCTGAATCAAAGT 300
consensus_7520#1      ------------------------------------------------------------
                                                                                  

consensus_7520#0      TGGGTTTTTTTTAAAATTGGTTATGAAACTGGATGGGTGGATTTGTTAAAGCACACTAAT 360
consensus_7520#1      ------------------------------------------------------------
                                                                                  

consensus_7520#0      GTGGAGCCTATAATTAACAAAGACAATCAAGAAATGCTAATTATACTTCCAAGAGATTAT 420
consensus_7520#1      ----GTTCTACACCTTTTCTTCATGAT----ATATACTAGCTTT--TGTCAACATTTTTA 50
                             *** *  *       *  **    * ** ***  * *  *  *** *  **  

consensus_7520#0      TCAGAAAAAGGGTATAGGGGTATAGCGAAACTAAAAATTCCAATATTACCGTCAGAGACT 480
consensus_7520#1      TAAAGCAAAG----TAAAATCATTTTATTTCCAG-----CCAATATTACCGTCAGAAACT 101
                      * *   ****    **     **       * *      ***************** ***

consensus_7520#0      CTTCAATTACCCAATTGGATTATTACGCCGAATTTTGATGTGAAGGAAATACTACATTAT 540
consensus_7520#1      CTTCAATTACCCAATTGGATTATTACGCCGAATTTTGATGTGAAGGAAATACTACATTAT 161
                      ************************************************************

consensus_7520#0      GATGGTAATGATGAAGTCATTTTTATTGGAACAGGACCTGACTCCAAAAACTCTCATGTT 600
consensus_7520#1      GATGGTAATGATGAAGTCATTTTTATTGGAACAGGACCTGACTCCAAAAACTCTCATGTT 221
                      ************************************************************

consensus_7520#0      TATTGGACTTCACAATCCAGAGGTAATATGACTTGTCTTACTTGTGAAAATGTGAATAAT 660
consensus_7520#1      TATTGG----------TAAGTGGGAATAT--------TTAATTATGGGA-TGCAGGCCAA 262
                      ******            ** ** *****        *** ** **  * **      * 

consensus_7520#0      ACATATAATTGGGCAGAAGTTCTGGCAAACGGAAAGTATTTAGTTCAAGATGTTCGAGGC 720
consensus_7520#1      GTAAATGTAAAGACA--------------------------------------------- 277
                        * **     * **                                             

consensus_7520#0      TCGGGTACTCCCAAAACTTTTCTAAAAAGAATTATTAGGAATTTTACAGAAACGAATAAT 780
consensus_7520#1      ------------------------------------------------------------
                                                                                  

consensus_7520#0      TTCACGGTTACCACAGAAATAATCAAGTATTTTGT 815
consensus_7520#1      -----------------------------------