cluster # 7523

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Schistosoma mansoni
cluster # 7523 cluster # 7523 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7523#0 length = 558 sequences # 2

consensus_7523#1 length = 511 sequences # 2
consensus_7523#2 length = 227 sequences # 1

consensusID : consensus_7523#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 558
fasta sequence

                              [TTTTATGTTAGGTTAAGTATTATTGCCGACCCCCCACTTTTTTAGGACAACCTGGAAAGTGAATTGGCACTGACCACCATTCGGGTTTCACACTAGTAA-TGTACACATTACTGCGGGGTTTGTGGCAATATATATCACAAAGGGATGAGTTTTCTGTCCTCATACTAGGTTTGGATGGCGCTGGAAAAACAGTAGTTTTGGTTACATATGATTGACAAGTCTAGACCTATTTAGAACAAGCTAAAATAAATTTTGTTCCGAATTATAAATCTATCCCAATTCAGAAAATCACTACTACCGTTGGTCTAAATATCGGTTACATTGAGGTTGACGGGATCCGGCTTAAATTTTGGGATCTTGGAGGTCAAGAAGAGCTTCAGTCCTTGTGGGATAAGTACTACGCTGAATCAAACGGTGTTATTTATGTCGTTGATTCTGCAGATAGTGATCGTTTTGATGAATCAAAAGATGCATTTGATAAGATGGTAAGAAACCCTGTACTGGAAGGTGTACCGTTACTGGTTCTAGCTAACAAGCAAGATGTGCAGAGTGCATTCC]

[-] EMBL CD193608             [TTTTATGTTAGGTTAAGTATTATTGCCGACCCCCCACTTTTTTAGGACAACCTGGAAAGTGAATTGGCACTGACCACCATTCGGGTTTCACACTAGTAA TGTACACATTACTGCGGGGTTTGTGGCAATATATATCACAAAGGGATGAGTTTTCTGTCCTCATACTAGGTTTGGATGGCGCTGGAAAAACAGTAGTTTTGGTTACATATGATTGACAAGTCTAGACCTATTTAGAACAAGCTAAAATAAATTTTGTTCCGAATTATAAATCTATCCCAATTCAGAAAATC                                                                                                                                                                                                                                                                            ]
[+] EMBL CD084283             [                                agtcagtaTTTA GACAACCTGGAAAGTGAATTGGCACTGACCACCATTCGGGTTTCACACTAGTAAGTGTACACATTACTGCGGGGTTTGTGGCAATATATATCACAAAGTGATTAGTTTTCTGTCCTCATACTAGGTTTGGATGGCGCTGGAAAAACAGTAGTTTTGGTTACATATGATTGACAAGTCTAGACCTATTTAGAACAAGCTAAAATAAATTTTGTTCCGAATTATAAATCTATCCCAATTCAGAAAATCACTACTACCGTTGGTCTAAATATCGGTTACATTGAGGTTGACGGGATCCGGCTTAAATTTTGGGATCTTGGAGGTCAAGAAGAGCTTCAGTCCTTGTGGGATAAGTACTACGCTGAATCAAACGGTGTTATTTATGTCGTTGATTCTGCAGATAGTGATCGTTTTGATGAATCAAAAGATGCATTTGATAAGATGGTAAGAAACCCTGTACTGGAAGGTGTACCGTTACTGGTTCTAGCTAACAAGCAAGATGTGCAGAGTGCATTCC]




>consensus_7523#0
TTTTATGTTAGGTTAAGTATTATTGCCGACCCCCCACTTTTTTAGGACAACCTGGAAAGT
GAATTGGCACTGACCACCATTCGGGTTTCACACTAGTAATGTACACATTACTGCGGGGTT
TGTGGCAATATATATCACAAAGGGATGAGTTTTCTGTCCTCATACTAGGTTTGGATGGCG
CTGGAAAAACAGTAGTTTTGGTTACATATGATTGACAAGTCTAGACCTATTTAGAACAAG
CTAAAATAAATTTTGTTCCGAATTATAAATCTATCCCAATTCAGAAAATCACTACTACCG
TTGGTCTAAATATCGGTTACATTGAGGTTGACGGGATCCGGCTTAAATTTTGGGATCTTG
GAGGTCAAGAAGAGCTTCAGTCCTTGTGGGATAAGTACTACGCTGAATCAAACGGTGTTA
TTTATGTCGTTGATTCTGCAGATAGTGATCGTTTTGATGAATCAAAAGATGCATTTGATA
AGATGGTAAGAAACCCTGTACTGGAAGGTGTACCGTTACTGGTTCTAGCTAACAAGCAAG
ATGTGCAGAGTGCATTCC

consensusID : consensus_7523#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 511
fasta sequence

                              [GTGAACGGCGCTAGCCACCATTCGGGTTTCACACTAGTAATGTACACATTACTGCGGGGTTTGTGGCAATATATATCACAAAGGGATGAGTTTTCTGTCCTCATACTAGGTTTGGATGGCGCTGGAAAAACAACCTATTTAGAACAAGCTAAAATAAATTTTGTTCCGAATTATAAATCTATCCCAATTCAGAAAATCACTACTACCGTTGGTCTAAATATCGGTTACATTGAGGTTGACGGGATCCGGCTTACATTTTGGGATCTTGGAGGTCAAGAAGAGCTTCAGTCCTTGTGGGATAAGTACTACGCTGAATCATACGGTGTTATNTATGTCGCTGATTCTGCAGATAGTGATCGTTTTGATGAATCAAAAGATGCATTTGATAAGATGGTAAGAAACCCTGTACTGGAAGGTGTACCGTTACTGGTTCTAGCTAACAAGCAAGATGTGCAGAGTGCATTCCATTTGTCTGAAATCAACAAAGTCTTCTACGATAGCCTGCGTCTTG]

[+] EMBL CD151975             [GTGAACGGCGCTAGCCACCATTCGGGTTTCACACTAGTAATGTACACATTACTGCGGGGTTTGTGGCAATATATATCACAAAGGGATGAGTTTTCTGTCCTCATACTAGGTTTGGATGGCGCTGGAAAAACAACCTATTTAGAACAAGCTAAAATAAATTTTGTTCCGAATTATAAATCTATCCCAATTCAGAAAATCACTACTACCGTTGGTCTAAATATCGGTTACATTGAGGTTGACGGGATCCGGCTTACATTTTGGGATCTTGGAGGTCAAGAAGAGCTTCAGTCCTTGTGGGATAAGTACTACGCTGAATCATACGGTGTTATNTATGTCGCTGATTCTGCAGATAGTGATCGTTTTGATGAATCAAAAGAT                                                                                                                                     ]
[-] EMBL CD097176             [                                                                                   GGATGAGTTTTCTGTCCTCATACTAGGTTTGGATGGCGCTGGAAAAACAACCTATTTAGAACAAGCTAAAATAAATTTTGTTCCGAATTATAAATCTATCCCAATTCAGAAAATCACTACTACCGTTGGTCTAAATATCGGTTACATTGAGGTTGACGGGATCCGGCTTAAATTTTGGGATCTTGGAGGTCAAGAAGAGCTTCAGTCCTTGTGGGATAAGTACTACGCTGAATCAAACGGTGTTATTTATGTCGTTGATTCTGCAGATAGTGATCGTTTTGATGAATCAAAAGATGCATTTGATAAGATGGTAAGAAACCCTGTACTGGAAGGTGTACCGTTACTGGTTCTAGCTAACAAGCAAGATGTGCAGAGTGCATTCCATTTGTCTGAAATCAACAAAGTCTTCTACGATAGCCTGCGTCTTG]




>consensus_7523#1
GTGAACGGCGCTAGCCACCATTCGGGTTTCACACTAGTAATGTACACATTACTGCGGGGT
TTGTGGCAATATATATCACAAAGGGATGAGTTTTCTGTCCTCATACTAGGTTTGGATGGC
GCTGGAAAAACAACCTATTTAGAACAAGCTAAAATAAATTTTGTTCCGAATTATAAATCT
ATCCCAATTCAGAAAATCACTACTACCGTTGGTCTAAATATCGGTTACATTGAGGTTGAC
GGGATCCGGCTTACATTTTGGGATCTTGGAGGTCAAGAAGAGCTTCAGTCCTTGTGGGAT
AAGTACTACGCTGAATCATACGGTGTTATNTATGTCGCTGATTCTGCAGATAGTGATCGT
TTTGATGAATCAAAAGATGCATTTGATAAGATGGTAAGAAACCCTGTACTGGAAGGTGTA
CCGTTACTGGTTCTAGCTAACAAGCAAGATGTGCAGAGTGCATTCCATTTGTCTGAAATC
AACAAAGTCTTCTACGATAGCCTGCGTCTTG

consensusID : consensus_7523#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 227
fasta sequence

                              [CGCAGGCCAGAATTCGGCACGAGGGCGTATGGTGTGAATATAGTCAGTATTTAGACAACCTGGAAAGTGAATTGGCACTGACCACCATTCGGGTTTCACACTAGTAATGTACACATTACTGCGGGGTTTGTGGCAATATATATCACAAAGGGATGAGTTTTCTGTCCTCATACTAGGTTTGGATGGCGCTGGAAAACAGTAGTTNTGGTTACATATGATTGACAAGT]

[+] EMBL CD077544             [CGCAGGCCAGAATTCGGCACGAGGGCGTATGGTGTGAATATAGTCAGTATTTAGACAACCTGGAAAGTGAATTGGCACTGACCACCATTCGGGTTTCACACTAGTAATGTACACATTACTGCGGGGTTTGTGGCAATATATATCACAAAGGGATGAGTTTTCTGTCCTCATACTAGGTTTGGATGGCGCTGGAAAACAGTAGTTNTGGTTACATATGATTGACAAGT]




>consensus_7523#2
CGCAGGCCAGAATTCGGCACGAGGGCGTATGGTGTGAATATAGTCAGTATTTAGACAACC
TGGAAAGTGAATTGGCACTGACCACCATTCGGGTTTCACACTAGTAATGTACACATTACT
GCGGGGTTTGTGGCAATATATATCACAAAGGGATGAGTTTTCTGTCCTCATACTAGGTTT
GGATGGCGCTGGAAAACAGTAGTTNTGGTTACATATGATTGACAAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7523#0      --------TTTTATGTTAGGTTAAGTATTATTGCCGACCCCCCACTTTTTTAGGACAACC 52
consensus_7523#1      ------------------------------------------------------------
consensus_7523#2      CGCAGGCCAGAATTCGGCACGAGGGCGTATGGTGTGAATATAGTCAGTATTTAGACAACC 60
                                                                                  

consensus_7523#0      TGGAAAGTGAATTGGCACTGACCACCATTCGGGTTTCACACTAGTAATGTACACATTACT 112
consensus_7523#1      ------GTGAAC-GGCGCTAGCCACCATTCGGGTTTCACACTAGTAATGTACACATTACT 53
consensus_7523#2      TGGAAAGTGAATTGGCACTGACCACCATTCGGGTTTCACACTAGTAATGTACACATTACT 120
                            *****  *** **  ***************************************

consensus_7523#0      GCGGGGTTTGTGGCAATATATATCACAAAGGGATGAGTTTTCTGTCCTCATACTAGGTTT 172
consensus_7523#1      GCGGGGTTTGTGGCAATATATATCACAAAGGGATGAGTTTTCTGTCCTCATACTAGGTTT 113
consensus_7523#2      GCGGGGTTTGTGGCAATATATATCACAAAGGGATGAGTTTTCTGTCCTCATACTAGGTTT 180
                      ************************************************************

consensus_7523#0      GGATGGCGCTGGAAAAACAGTAGTTTTGGTTACATATGATTGACAAGTCTAGACCTATTT 232
consensus_7523#1      GGATGGCGCTGGAAAAACA---------------------------------ACCTATTT 140
consensus_7523#2      GGATGGCGCTGGAAAACAG------------------------------TAGTTNTGGTT 210
                      ****************                                       *  **

consensus_7523#0      AGAACAAGCTAAAATAAATTTTGTTCCGAATTATAAATCTATCCCAATTCAGAAAATCAC 292
consensus_7523#1      AGAACAAGCTAAAATAAATTTTGTTCCGAATTATAAATCTATCCCAATTCAGAAAATCAC 200
consensus_7523#2      ACATATGATTGA--CAAGT----------------------------------------- 227
                      * *      * *   ** *                                         

consensus_7523#0      TACTACCGTTGGTCTAAATATCGGTTACATTGAGGTTGACGGGATCCGGCTTAAATTTTG 352
consensus_7523#1      TACTACCGTTGGTCTAAATATCGGTTACATTGAGGTTGACGGGATCCGGCTTACATTTTG 260
consensus_7523#2      ------------------------------------------------------------
                                                                                  

consensus_7523#0      GGATCTTGGAGGTCAAGAAGAGCTTCAGTCCTTGTGGGATAAGTACTACGCTGAATCAAA 412
consensus_7523#1      GGATCTTGGAGGTCAAGAAGAGCTTCAGTCCTTGTGGGATAAGTACTACGCTGAATCATA 320
consensus_7523#2      ------------------------------------------------------------
                                                                                  

consensus_7523#0      CGGTGTTATTTATGTCGTTGATTCTGCAGATAGTGATCGTTTTGATGAATCAAAAGATGC 472
consensus_7523#1      CGGTGTTATNTATGTCGCTGATTCTGCAGATAGTGATCGTTTTGATGAATCAAAAGATGC 380
consensus_7523#2      ------------------------------------------------------------
                                                                                  

consensus_7523#0      ATTTGATAAGATGGTAAGAAACCCTGTACTGGAAGGTGTACCGTTACTGGTTCTAGCTAA 532
consensus_7523#1      ATTTGATAAGATGGTAAGAAACCCTGTACTGGAAGGTGTACCGTTACTGGTTCTAGCTAA 440
consensus_7523#2      ------------------------------------------------------------
                                                                                  

consensus_7523#0      CAAGCAAGATGTGCAGAGTGCATTCC---------------------------------- 558
consensus_7523#1      CAAGCAAGATGTGCAGAGTGCATTCCATTTGTCTGAAATCAACAAAGTCTTCTACGATAG 500
consensus_7523#2      ------------------------------------------------------------
                                                                                  

consensus_7523#0      -----------
consensus_7523#1      CCTGCGTCTTG 511
consensus_7523#2      -----------