| These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs : 
 consensusID : consensus_7524#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1039 fasta sequence 
                              [CGAGGCCAGTAATTCGGCACGAGGAGCATGAGTCAATTGAAGCTAGACCACCTCGAAAACCTGGAAGCACTGCTGAGGAGTTCCATAGTATTTTTTTTGTTTTACGATGGTTGAATTATATACTATAGGATCTAGAAAATTAATTACCTCTTAAATCATTATATTTAAAGCAGATTTTTTACATTTTGAATAATAAGAATATAATCACTGCTTTATTGGTTGATAAAATTTCATATGATTACTAAGTCCTATGGTATATAAAACTCTGTACGTAAGCAAATTAGTTGATAAAAGTATCATTGAATATGCAGTTGAAGGATGAATGCTCAAAGTCGTATCTTTCATCGTTTGAAATCCATCGAACTCATTAAGGGCAGAGTAATATTATTTTCAGATTGTTTCTGGGAAAACTTACTTTTTCTTTTAATAAAACCAGATTGTGTAGTTCAATTCTTTAAAATAATTATTACTTATGATATTCCATATATGAAGCTAACAAGAATCTATATATAAACTGTACACTCGTTTATTTTATAAGCTTCTACAACTGTGTATTTATTTGACCGGGAATGTCCTTCCCATTCTGCATTTTATCAATGTAACTTCTCAATCAAATGTAATCATTTACACAATAAACCATTGAAACGAAAAAAGATAATGCAAAATAATACTTGTTTAACTGACTGTCAAAGTTTTCAAAAGTGATTACTGAATAGATATTGACTTGTAATGAAAAATACCGTGAAAAGTCATCATTGTAATAGGATTTAGTCATTTGTTAATCTGTTCACATTACTATTGTTTATTTAAAATTAACAATCCGGGTGTTCTTTAAAAATTTTTATTTGTTTAGTTTCATCTTTGATCTTCTTAGTCGAGCTGGAATTATCACTGGNACCATATACCATACAACTGGTATCGATGAAATATGTCATTCACTATTCACACATAGTAATGGNTATATATNGCATATGGCTATTAANTTTTTTTTGGTAAATGGCTTAAAGATTTTGTTTTCCAAGAGAGATCGACCATTAAA]
[+] EMBL CD081776             [CGAGGCCAGTAATTCGGCACGAGGAGCATGAGTCAATTGAAGCTAGACCACCTCGAAAACCTGGAAGCACTGCTGAGGAGTTCCATAGTATTTTTTTTGTTTTACGATGGTTGAATTATATACTATAGGATCTAGAAAATTAATTACCTCTTAAATCATTATATTTAAAGCAGATTTTTTACATTTTGAATAATAAGAATATAATCACTGCTTTATTGGTTGATAAAATTTCATATGATTACTAAGTCCTATGGTATATAAAACTCTGTACGTAAGCAAATTAGTTGATAAAAGTATCATTGAATATGCAGTTGAAGGATGAATGCTCAAAGTCGTATCTTTCATCGTTTGAAATCCATCGAACTCATTAAGGGCAGAGTAATATTATTTTCAGATTGTTTCTGGGAAAACTTACTTTTTCTTTTAATAAAACCAGATTGTGTAGTTCAATTCTTTAAAATAATTATTACTTATGATATTCCATATATGAAGCTAACAAGAATCTATATATAAACTGTACACTCGTTTATTTTATAAGCTTCTACAACTGTGTATTTATTTGACCGGGAATGTCCTTCCCATTCTGCATTTTATCAATGTAACTTCTCAATCAAATGTAATCATTTACACAATAAACCATTGAAACGAAAAAAGATAATGCAAAATAATACTTGTTTAACTGACTGTCAAAGTTTTCAAAAGTGATTACTGAATAGATATTGACTTGTAATGAAAAATACCGTGAAAAGTCATCATTGTAATAGGATTTAGTCATTTGTTAATCTGTTCACATTACTATTGTTTATTTAAAATTAACAATCCGGGTGTTCTTTAAAAATTTTTATTTGTTTAGTTTCATCTTTGATCTTCTTAGTCGAGCTGGAATTATCACTGGNACCATATACCATACAACTGGTATCGATGAAATATGTCATTCACTATTCACACATAGTAATGGNTATATATNGCATATGGCTATTAANTTTTTTTTGGTAAATGGCTTAAAGATTTTGTTTTCCAAGAGAGATCGACCATTAAA]
consensusID : consensus_7524#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 818 fasta sequence 
                              [CANNATTGTTAGCTGATAATATATCATCTTTAATATGTAAACGATAACACGAGATTGAATCATTATGTTGTAGTNTGAAATTTGTCTTAAAATTGAAAGTAACATTTGCTTCACCTGGGAGATACCCGAACACAGTCTTAAGAAACTCACTGACTTCGTGTAAACCTTTGGTTTTGCGTATTTTGACATTATGTGTTGAATTAGTGAATGACATAATTTCATCGATTACAGTTTGTATGGTATTATTGGTCCAGTGATTAATTCCAGCTCGACTAAGAAGATCAAAGATGAAACTGCCATCTTTGGTAAGACCTTCAGGAGGAACATTTAATTCATCAATTAATCTTTCTAATTCAATCAACTGTCCTTTTAATGTGATCATTTTCTCGATGCTCAAAGCTTCAATTGCATTTCCTTCAGGATGCGTCATATCAAACAATCCTTTTCTATTCATTATAACTGAGAGTTTTTGTTCACTATTTTGATTCACGTTGCAGTTACTGTCTGAAAGTTCTATTTCTTGTTGCTCCTTAGTATGATCGAGTACAACTTCGCACACACATTTGACATGTTCAATAGCTGACGCTAATAAGGCAGAACTTAATGTCACCGATGAAGCATCTTCACATACTTGCTCAATATTATGAGCTTCATCGAAAATAACTGTTGTATTTTCAAGGTTAATATTATAAAGACTTCGAATTCGTGGGTCAAGCACGTAATTATAAGGCATGAAAATCAAAGATGAATCAGTCTTAAGTTCTCTCGATATGAAATAAGGACAACATCTAAAACAAAAAAACAGTACAAACTTATTT]
[-] EMBL CD195191             [CANNATTGTTAGCTGATAATATATCATCTTTAATATGTAAACGATAACACGAGATTGAATCATTATGTTGTAGTNTGAAATTTGTCTTAAAATTGAAAGTAACATTTGCTTCACCTGGGAGATACCCGAACACAGTCTTAAGAAACTCACTGACTTCGTGTAAACCTTTGGTTTTGCGTATTTTGACATTATGTGTTGAATTAGTGAATGACATAATTTCATCGATTACAGTTTGTATGGTATTATTGGTCCAGTGATTAATTCCAGCTCGACTAAGAAGATCAAAGATGAAACTGCCATCTTTGGTAAGACCTTCAGGAGGAACATTTAATTCATCAATTAATCTTTCTAATTCAATCAACTGTCCTTTTAATGTGATCATTTTCTCGATGCTCAAAGCTTCAATTGCATTTCCTTCAGGATGCGTCATATCAAACAATCCTTTTCTATTCATTATAACTGAGAGTTTTTGTTCACTATTTTGATTCACGTTGCAGTTACTGTCTGAAAGTTCTATTTCTTGTTGCTCCTTAGTATGA                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD195185             [      TGTTAGCTGATAATATATCATCTTTAATATGTAAACGATAACACGAGATTGAATCATTATGTTGTAGTNTGAAATTGTTCTTAAAATTGAAAGTAACATTTGCTTCACCTGGGAGATACCCGAACACAGTCTTAAGAAACTCACTGACTTCGTGTAAACCTTTGGTTTTGCGTATTTTGACATTATGTGTTGAATTAGTGAATGACATAATTTCATCGATTACAGTTTGTATGGTATTATTGGTCCAGTGATTAATTCCAGCTCGACTAAGAAGATCAAAGATGAAACTGCCATCTTTGGTAAGACCTTCAGGAGGAACATTTAATTCATCAATTAATCTTTCTAATTCAATCAACTGTCCTTTTAATGTGATCATTTTCTCGATGCTCAAAGCTTCAATTGCATTTCCTTCAGGATGCGTCATATCAAACAATCCTTTTCTATTCATTATAACTGAGAGTTTTTGTTCACTATTTTGATTCACGTTGCAGTTACTGTCTGAAAGTTCTATTTCTTGTTGCTCCTTAGTATGA                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD121592             [                                                                                                                                                                                                                                                                                                                                                                                                                                             TATCAAACAATCCTTTTCTATTCATTATAACTGAGAGTTTTTGTTCACTATTTTGATTCACGTTGCAGTTACTGTCTGAAAGTTCTATTTCTTGTTGCTCCTTAGTATGATCGAGTACAACTTCGCACACACATTTGACATGTTCAATAGCTGACGCTAATAAGGCAGAACTTAATGTCACCGATGAAGCATCTTCACATACTTGCTCAATATTATGAGCTTCATCGAAAATAACTGTTGTATTTTCAAGGTTAATATTATAAAGACTTCGAATTCGTGGGTCAAGCACGTAATTATAAGGCATGAAAATCAAAGATGAATCAGTCTTAAGTTCTCTCGATATGAAATAAGGACAACATCTAAAACAAAAAAACAGTACAAACTTATTT]
consensusID : consensus_7524#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 758 fasta sequence 
                              [ATCATTGAATATGCAGTTGAAGGATGAATGCTCAAAGTCGTATCTTTCATCGTTTGAAATCCATCGAACTCATTAAGGGCAGAGTAATATTATTTTCAGATTGTTTCTGGGAAAACTTACTTTTTCTTTTAATAAAACCAGATTGTGTAGTTCAATTCTTTAAAATAATTATTACTTATGATATTCCATATATGAAGCTAACAAGAATCTATATATAAACTGTACACTCGTTTATTTTATAAGCTTCTACAACTGTGTATTTATTTGACCGGGAATGTCCTTCCCATTCTGCATTTTATCAATGTAACTTCTCAATCAAATGTAATCATTTACACAATAAACCATTGAAACGAAAAAAGATAATGCAAAATAATACTTGTTTAACTGACTGTCAAAGTTTTCAAAAGTGATTACTGAATAGATATTGACTTGTAATGAAAAATACCGTGAAAAGTCATCATTGTAATAGGATTTAGTCATTTGTTAATCTGTTCACATTACTATTGTTTATTTAAAATTAACAATCCGGGTGTTCTTTAAAAATTTTTATTTGTTTAGTTTCATCTTTGATCTTCTTAGTCGAGCTGGAATTAATCACTGGACCAATAATACCATACAAACTGTAATCGATGAAATTATGTCATTCACTAATTCAACACATAGTAATTGTTATTAGATGCATTATTGCTTATTTAATTTTATTTTGTTAAATGTCTTTTAAAGATTTTTGTATTCCAAAAGAGAAGATCAGAGCTTTT]
[-] EMBL CD075507             [ATCATTGAATATGCAGTTGAAGGATGAATGCTCAAAGTCGTATCTTTCATCGTTTGAAATCCATCGAACTCATTAAGGGCAGAGTAATATTATTTTCAGATTGTTTCTGGGAAAACTTACTTTTTCTTTTAATAAAACCAGATTGTGTAGTTCAATTCTTTAAAATAATTATTACTTATGATATTCCATATATGAAGCTAACAAGAATCTATATATAAACTGTACACTCGTTTATTTTATAAGCTTCTACAACTGTGTATTTATTTGACCGGGAATGTCCTTCCCATTCTGCATTTTATCAATGTAACTTCTCAATCAAATGTAATCATTTACACAATAAACCATTGAAACGAAAAAAGATAATGCAAAATAATACTTGTTTAACTGACTGTCAAAGTTTTCAAAAGTGATTACTGAATAGATATTGACTTGTAATGAAAAATACCGTGAAAAGTCATCATTGTAATAGGATTTAGTCATTTGTTAATCTGTTCACATTACTATTGTTTATTTAAAATTAACAATCCGGGTGTTCTTTAAAAATTTTTATTTGTTTAGTTTCATCTTTGATCTTCTTAGTCGAGCTGGAATTAATCACTGGACCAATAATACCATACAAACTGTAATCGATGAAATTATGTCATTCACTAATTCAACACATAGTAATTGTTATTAGATGCATTATTGCTTATTTAATTTTATTTTGTTAAATGTCTTTTAAAGATTTTTGTATTCCAAAAGAGAAGATCAGAGCTTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7524#0      CGAGGCCAGTAATTCGGCACGAGGAGCATGAGTCAATTGAAGCTAGACCACCTCGAAAAC 60
consensus_7524#2      ------------------------------------------------------------
consensus_7524#1      ------------------------------------------------------------
                                                                                  
consensus_7524#0      CTGGAAGCACTGCTGAGGAGTTCCATAGTATTTTTTTTGTTTTACGATGGTTGAATTATA 120
consensus_7524#2      ------------------------------------------------------------
consensus_7524#1      ------------------------------------------------------------
                                                                                  
consensus_7524#0      TACTATAGGATCTAGAAAATTAATTACCTCTTAAATCATTATATTTAAAGCAGATTTTTT 180
consensus_7524#2      ------------------------------------------------------------
consensus_7524#1      ------------------------------------------------------------
                                                                                  
consensus_7524#0      ACATTTTGAATAATAAGAATATAATCACTGCTTTATTGGTTGATAAAATTTCATATGATT 240
consensus_7524#2      ------------------------------------------------------------
consensus_7524#1      -----------------------------------------------------CANNATT 7
                                                                                  
consensus_7524#0      ACTAAGTCCTATGGTATATAAAACTCTGTACGTAAGCAAATTAGTTGATAAAAGTATCAT 300
consensus_7524#2      -------------------------------------------------------ATCAT 5
consensus_7524#1      GTTAG--CTGATAATATATCATCTTTAATATGTAAACGA--TAACACGAGATTGAATCAT 63
                                                                             *****
consensus_7524#0      TGAATATGCAGTT-GAAGGATG----AATGCTCAAAGTCGTATCTTTCATCGTTTGAAAT 355
consensus_7524#2      TGAATATGCAGTT-GAAGGATG----AATGCTCAAAGTCGTATCTTTCATCGTTTGAAAT 60
consensus_7524#1      TATGT-TGTAGTNTGAAATTTGTCTTAAAATTGAAAGTAACAT-TTGCTTCACCTGGGAG 121
                      *   * ** ***  ***   **    **   * *****   ** ** * **   **  * 
consensus_7524#0      CCATC-GAACTCA---TTAAGGG-CAGAGTAATATTATTTTCAGATT-GTTTCTGGGAAA 409
consensus_7524#2      CCATC-GAACTCA---TTAAGGG-CAGAGTAATATTATTTTCAGATT-GTTTCTGGGAAA 114
consensus_7524#1      ATACCCGAACACAGTCTTAAGAAACTCACTGACTTCGTGTAAACCTTTGGTTTTGCGTAT 181
                        * * **** **   *****   *  * * *  *  * *  *  ** * ** ** * * 
consensus_7524#0      ACTTACTTTTTCTTTTAATAAAACCAGATTGTGTAGTTCAATTCTTTAAAATAATTATTA 469
consensus_7524#2      ACTTACTTTTTCTTTTAATAAAACCAGATTGTGTAGTTCAATTCTTTAAAATAATTATTA 174
consensus_7524#1      TTTGACATTATGTGTTGA-ATTAGTGAATGACATAATTTCATCGATTACAGTTTGTATGG 240
                        * ** ** * * ** * *  *    **    ** **  **   *** * *   ***  
consensus_7524#0      CTTATGATATTCCATATATGAAGCTAACAAGAATCTATATATAAACTGTACACTCGTT-T 528
consensus_7524#2      CTTATGATATTCCATATATGAAGCTAACAAGAATCTATATATAAACTGTACACTCGTT-T 233
consensus_7524#1      TATTATTGGTCCAGTGATTAATTCCAGCTCGACTAAGAAGATCAAAGATGAAACTGCCAT 300
                        *      * *  *   * *  * * *  ** *    * ** **   *  *   *   *
consensus_7524#0      ATTTTATAAGCTTCTACAACTGTGTATTTATTTGACCGGGAATGTCCTTCCCATTCTGCA 588
consensus_7524#2      ATTTTATAAGCTTCTACAACTGTGTATTTATTTGACCGGGAATGTCCTTCCCATTCTGCA 293
consensus_7524#1      CTTTGGTAAGACCTTCAGGAGGAACATTTAATTCATCAATTA-ATCTTTCTAATTCAATC 359
                       ***  ****    *      *   ***** ** * *    *  ** ***  ****    
consensus_7524#0      TTTTATCAATGTAACTTCTCAATCAAATGTAATCATTTACACAATAAAC-CATTGAAACG 647
consensus_7524#2      TTTTATCAATGTAACTTCTCAATCAAATGTAATCATTTACACAATAAAC-CATTGAAACG 352
consensus_7524#1      AACTGTCCTTTTAATGTGATCATTTTCT-CGATGCTCAAAGCTTCAATTGCATTTCCTTC 418
                         * **  * ***  *    **    *   **  *  *  *   **   ****      
consensus_7524#0      AAAAAAGATAATGCAAAATAATACTTGTTTA---ACTGACTGTCAAAGTTTTCAAAAGTG 704
consensus_7524#2      AAAAAAGATAATGCAAAATAATACTTGTTTA---ACTGACTGTCAAAGTTTTCAAAAGTG 409
consensus_7524#1      AGGATGCGTCATATCAAACAATCCTTTTCTATTCATTATAACTGAGAGTTTTTGTTCACT 478
                      *  *    * **   *** *** *** * **   * *     * * ******        
consensus_7524#0      ATTACTGAATAGATATTGACTTGTAATGAAAAATACCGTGAAAAGTCATCATTGTAATAG 764
consensus_7524#2      ATTACTGAATAGATATTGACTTGTAATGAAAAATACCGTGAAAAGTCATCATTGTAATAG 469
consensus_7524#1      ATTTTGATTCACGTTGCAGTTACTGTCTGAAAGTTCTATTTCTTGTTGCTCCT-TAGTAT 537
                      ***       *  *      *  *     *** * *  *     **      * ** ** 
consensus_7524#0      GATTTAGTCATTTGTTAATCTGTTCACATTAC-TATTGTTTATTTAAAATTAACAATCCG 823
consensus_7524#2      GATTTAGTCATTTGTTAATCTGTTCACATTAC-TATTGTTTATTTAAAATTAACAATCCG 528
consensus_7524#1      GATCGAGT-ACAACTTCGCACACACATTTGACATGTTCAATAGCTGACGCTAATAAGGCA 596
                      ***  *** *    **        **  * ** * **   **  * *   *** **  * 
consensus_7524#0      GGTGTTCTTTAAAAATTTTTATTTGTTTAGTTTCATCTTTGATCTTCTTAGTCGAGCTGG 883
consensus_7524#2      GGTGTTCTTTAAAAATTTTTATTTGTTTAGTTTCATCTTTGATCTTCTTAGTCGAGCTGG 588
consensus_7524#1      GAACTT--------AATGTCACCGATGAAGCATCTTCACATACTTGCTCAATATTATGAG 648
                      *   **        * * * *    *  **  ** **    *  * ** * *       *
consensus_7524#0      AATTA-TCACTGGNACCATA-TACCATACAA-CTGGTATCGATGAAAT-ATGTCATTCAC 939
consensus_7524#2      AATTAATCACTGGACCAATAATACCATACAAACTGTAATCGATGAAATTATGTCATTCAC 648
consensus_7524#1      CTTCATCGAAAATAACTGTTGTATTTTCAAGGTTAATATT-ATAAAGACTTCGAATTCGT 707
                        * *   *      *  *  **   *  *   *   **  ** **    *   ****  
consensus_7524#0      TATTC--ACACATAGTAATG-GNTATATATNGCAT--ATGGCTA---TTAANTTTTTTTT 991
consensus_7524#2      TAATTCAACACATAGTAATT-GTTATTAGATGCATT-ATTGCTTA-TTTAATTTTATTTT 705
consensus_7524#1      GGGTCAAGCACGTAATTATAAGGCATGAAAATCAAAGATGAATCAGTCTTAAGTTCTCTC 767
                         *    *** ** * **  *  **      **   **   *     * *  ** * * 
consensus_7524#0      GGTAAATGGCTT--AAAGATTTT-GTTTTCCAAGAGAGATCGACCATTAAA--- 1039
consensus_7524#2      GTTAAATGTCTTTTAAAGATTTTTGTATTCCAAAAGAGAA-GATCAGAGCTTTT 758
consensus_7524#1      GATATGAAATAAGGACAACATCTAAAACAAAAAAACAGTACAAACTTATTT--- 818
                      * **          * *   * *        ** * **    * *         
 | 
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||