cluster # 7527

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Schistosoma mansoni
cluster # 7527 cluster # 7527 Sequences # 5 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7527#0 length = 602 sequences # 1
consensus_7527#1 length = 469 sequences # 1

consensus_7527#2 length = 379 sequences # 1
consensus_7527#3 length = 366 sequences # 1
consensus_7527#4 length = 213 sequences # 1

consensusID : consensus_7527#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 602
fasta sequence

                              [GTTTCAAATAAATGAACTATGGTGTACTTGAGAACATCTTCAATATCATCCGAAATTAACACGACGGACTACACCGCGAATTCGTGTATGGAGGACAGCTCAAAGATGCTTTCGAAGTGAGGACCGGTGTCAGACAAGGCTGTTTACTCTCGCACTTCCATTTTCTTCTGGTGGTTGACCGGATTATGAAGACCTTCATATCACCGGGAAAGCACGGCATTCAATGGACAGTTTGCATACAACTAAACGATTTGGGCTTCGCAGATTACTTGGCCTTTCTATCTCATACATACGAACAAATGAAAATGAAGACAACTAGTGTAGCGGCAGCCTCTGCAGCAGTAGGCCTCAACATACACAAAGGAAAAAGCATGATCCTCAAATACAACACGGAGAACACCAAATCAATCACACTTAATGGAGAAGCTCTAGAAGATGTGGAATCTTTCACGTACCTGGGAAGCATCATCGATGAACAATGAGGATCTGATACAGACGTAAAGGCAAGGATCGGCAAATCAAGGACAGCATCCCTACAGTTGTAGAACATATGGAACCCANNAACACCCTTAACCAATATCAAAGTGACAATCTTNCATACG]

[+] EMBL CD124247             [GTTTCAAATAAATGAACTATGGTGTACTTGAGAACATCTTCAATATCATCCGAAATTAACACGACGGACTACACCGCGAATTCGTGTATGGAGGACAGCTCAAAGATGCTTTCGAAGTGAGGACCGGTGTCAGACAAGGCTGTTTACTCTCGCACTTCCATTTTCTTCTGGTGGTTGACCGGATTATGAAGACCTTCATATCACCGGGAAAGCACGGCATTCAATGGACAGTTTGCATACAACTAAACGATTTGGGCTTCGCAGATTACTTGGCCTTTCTATCTCATACATACGAACAAATGAAAATGAAGACAACTAGTGTAGCGGCAGCCTCTGCAGCAGTAGGCCTCAACATACACAAAGGAAAAAGCATGATCCTCAAATACAACACGGAGAACACCAAATCAATCACACTTAATGGAGAAGCTCTAGAAGATGTGGAATCTTTCACGTACCTGGGAAGCATCATCGATGAACAATGAGGATCTGATACAGACGTAAAGGCAAGGATCGGCAAATCAAGGACAGCATCCCTACAGTTGTAGAACATATGGAACCCANNAACACCCTTAACCAATATCAAAGTGACAATCTTNCATACG]




>consensus_7527#0
GTTTCAAATAAATGAACTATGGTGTACTTGAGAACATCTTCAATATCATCCGAAATTAAC
ACGACGGACTACACCGCGAATTCGTGTATGGAGGACAGCTCAAAGATGCTTTCGAAGTGA
GGACCGGTGTCAGACAAGGCTGTTTACTCTCGCACTTCCATTTTCTTCTGGTGGTTGACC
GGATTATGAAGACCTTCATATCACCGGGAAAGCACGGCATTCAATGGACAGTTTGCATAC
AACTAAACGATTTGGGCTTCGCAGATTACTTGGCCTTTCTATCTCATACATACGAACAAA
TGAAAATGAAGACAACTAGTGTAGCGGCAGCCTCTGCAGCAGTAGGCCTCAACATACACA
AAGGAAAAAGCATGATCCTCAAATACAACACGGAGAACACCAAATCAATCACACTTAATG
GAGAAGCTCTAGAAGATGTGGAATCTTTCACGTACCTGGGAAGCATCATCGATGAACAAT
GAGGATCTGATACAGACGTAAAGGCAAGGATCGGCAAATCAAGGACAGCATCCCTACAGT
TGTAGAACATATGGAACCCANNAACACCCTTAACCAATATCAAAGTGACAATCTTNCATA
CG

consensusID : consensus_7527#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 469
fasta sequence

                              [TGCCAACAGAGTTAGTAATACAGTTGTTAGGAAGGTAAGGATGGCAAATTGATTAATGATCAGTTGAGATGGCCGGAACGTGTTACGTATGCCCAACCGCCGACGTGCAATGCTTTATGGTGTAGGAGTTAGTAGAAAGAAAGCTAGAGGCGGCCAAACCAAGACGTAGCACATCCGTGAAATCAACGACAATTGGACTGAGCCATGCGGGTAGGTTGGGATTCGCGAGATGATAGCAATTGATGGTTAAAGACCTTGAATGACATGGCTCAAAATCGTTTGCAATGGCGNAAGTTCATCCACTGTTTGTGCTCTCCCAAATTATAATCTGAATTCTTTATATCAATATTTTTTTTTTCTTTCCAAATTTATTTCACTGGATTATACTCCTTGAATAATATCTTCAAACCCTAATCTTTCACGTTAATGCCTATACTCTTACTGCTTTTACCACACGGGATTTTGATCG]

[+] EMBL CD152924             [TGCCAACAGAGTTAGTAATACAGTTGTTAGGAAGGTAAGGATGGCAAATTGATTAATGATCAGTTGAGATGGCCGGAACGTGTTACGTATGCCCAACCGCCGACGTGCAATGCTTTATGGTGTAGGAGTTAGTAGAAAGAAAGCTAGAGGCGGCCAAACCAAGACGTAGCACATCCGTGAAATCAACGACAATTGGACTGAGCCATGCGGGTAGGTTGGGATTCGCGAGATGATAGCAATTGATGGTTAAAGACCTTGAATGACATGGCTCAAAATCGTTTGCAATGGCGNAAGTTCATCCACTGTTTGTGCTCTCCCAAATTATAATCTGAATTCTTTATATCAATATTTTTTTTTTCTTTCCAAATTTATTTCACTGGATTATACTCCTTGAATAATATCTTCAAACCCTAATCTTTCACGTTAATGCCTATACTCTTACTGCTTTTACCACACGGGATTTTGATCG]




>consensus_7527#1
TGCCAACAGAGTTAGTAATACAGTTGTTAGGAAGGTAAGGATGGCAAATTGATTAATGAT
CAGTTGAGATGGCCGGAACGTGTTACGTATGCCCAACCGCCGACGTGCAATGCTTTATGG
TGTAGGAGTTAGTAGAAAGAAAGCTAGAGGCGGCCAAACCAAGACGTAGCACATCCGTGA
AATCAACGACAATTGGACTGAGCCATGCGGGTAGGTTGGGATTCGCGAGATGATAGCAAT
TGATGGTTAAAGACCTTGAATGACATGGCTCAAAATCGTTTGCAATGGCGNAAGTTCATC
CACTGTTTGTGCTCTCCCAAATTATAATCTGAATTCTTTATATCAATATTTTTTTTTTCT
TTCCAAATTTATTTCACTGGATTATACTCCTTGAATAATATCTTCAAACCCTAATCTTTC
ACGTTAATGCCTATACTCTTACTGCTTTTACCACACGGGATTTTGATCG

consensusID : consensus_7527#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 379
fasta sequence

                              [CCCATCACTCCGTCGAAGACGTATCACCAACCCGGAAATCACAACAGTTTACAATCACCTCACCCCACTTCCCATTTCCAGCTTGTTGTTGTTGGTAGTGGTAATAACAATAACAACACCTCCAACAAACTACACCACCAGCAAAACACAACATTCCCACTTACACACCATCTTAATCTCTTCTTAATTCATCACGAAGCAGTTTATAAAACACTGGAGGAACGAATGACTGAGGGAAGTATTGCACAGTTGTACAGTGAAGGAGGACAATGAATACTGGAGGCGATGTACACGGACCGGAGATCGTGGGAATTGAAGTGTAAATGTGTTAGTGGGTATCGAGCGTGTTGGTCCCACTGATTGAATTGTGTTAGTGGTT]

[+] EMBL CD134406             [CCCATCACTCCGTCGAAGACGTATCACCAACCCGGAAATCACAACAGTTTACAATCACCTCACCCCACTTCCCATTTCCAGCTTGTTGTTGTTGGTAGTGGTAATAACAATAACAACACCTCCAACAAACTACACCACCAGCAAAACACAACATTCCCACTTACACACCATCTTAATCTCTTCTTAATTCATCACGAAGCAGTTTATAAAACACTGGAGGAACGAATGACTGAGGGAAGTATTGCACAGTTGTACAGTGAAGGAGGACAATGAATACTGGAGGCGATGTACACGGACCGGAGATCGTGGGAATTGAAGTGTAAATGTGTTAGTGGGTATCGAGCGTGTTGGTCCCACTGATTGAATTGTGTTAGTGGTT]




>consensus_7527#2
CCCATCACTCCGTCGAAGACGTATCACCAACCCGGAAATCACAACAGTTTACAATCACCT
CACCCCACTTCCCATTTCCAGCTTGTTGTTGTTGGTAGTGGTAATAACAATAACAACACC
TCCAACAAACTACACCACCAGCAAAACACAACATTCCCACTTACACACCATCTTAATCTC
TTCTTAATTCATCACGAAGCAGTTTATAAAACACTGGAGGAACGAATGACTGAGGGAAGT
ATTGCACAGTTGTACAGTGAAGGAGGACAATGAATACTGGAGGCGATGTACACGGACCGG
AGATCGTGGGAATTGAAGTGTAAATGTGTTAGTGGGTATCGAGCGTGTTGGTCCCACTGA
TTGAATTGTGTTAGTGGTT

consensusID : consensus_7527#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 366
fasta sequence

                              [TTTTTTTTTTTTTTTTTACAGGAAATTTCTATTGGCAGCAAATGCGCATATGGCAGAAATACATCTACACGTACAGAACTTAAAGAGAAAATATATCCGTCAAATCAAGAACAGATATATAACAGTAAAAAGTAACCATAAAACTGGGAACAATTGTGACAATTCAAAGTTAAGAACACTAATTATAATTAATTATGAAGTTAAGGGATATTATAACCGAACGTATTAATGAGCATCCGTAAGTGCAACAACTCCGGGTAATTGTTTACCTTCGAGAATTCAAGACTAGCACCACCACCAGTACTGACATGACTAACTTTGTCTTCTGTGTCCCATTTGGCGCAGCATGTTGCGGTGTCACCACCA]

[+] EMBL AI395118             [TTTTTTTTTTTTTTTTTACAGGAAATTTCTATTGGCAGCAAATGCGCATATGGCAGAAATACATCTACACGTACAGAACTTAAAGAGAAAATATATCCGTCAAATCAAGAACAGATATATAACAGTAAAAAGTAACCATAAAACTGGGAACAATTGTGACAATTCAAAGTTAAGAACACTAATTATAATTAATTATGAAGTTAAGGGATATTATAACCGAACGTATTAATGAGCATCCGTAAGTGCAACAACTCCGGGTAATTGTTTACCTTCGAGAATTCAAGACTAGCACCACCACCAGTACTGACATGACTAACTTTGTCTTCTGTGTCCCATTTGGCGCAGCATGTTGCGGTGTCACCACCA]




>consensus_7527#3
TTTTTTTTTTTTTTTTTACAGGAAATTTCTATTGGCAGCAAATGCGCATATGGCAGAAAT
ACATCTACACGTACAGAACTTAAAGAGAAAATATATCCGTCAAATCAAGAACAGATATAT
AACAGTAAAAAGTAACCATAAAACTGGGAACAATTGTGACAATTCAAAGTTAAGAACACT
AATTATAATTAATTATGAAGTTAAGGGATATTATAACCGAACGTATTAATGAGCATCCGT
AAGTGCAACAACTCCGGGTAATTGTTTACCTTCGAGAATTCAAGACTAGCACCACCACCA
GTACTGACATGACTAACTTTGTCTTCTGTGTCCCATTTGGCGCAGCATGTTGCGGTGTCA
CCACCA

consensusID : consensus_7527#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 213
fasta sequence

                              [TATTTCACTTCCACCCAAGTCAACCTTCAGGCACTAGTTTTTTTTCAGACAATGGTCCGATTTCCAGTGAATTTCCATTCAAATTAGAAACACTGGATACAGCCTTGACAGATGGTAAATGATATTGTTGGTTTACTATTTGTAAAAAGACATTAATTAACTTGACTAACACCCAAGAAGTAGCTCCTGTTGAATAACTGATTCTTTTAACGA]

[+] EMBL CD124581             [TATTTCACTTCCACCCAAGTCAACCTTCAGGCACTAGTTTTTTTTCAGACAATGGTCCGATTTCCAGTGAATTTCCATTCAAATTAGAAACACTGGATACAGCCTTGACAGATGGTAAATGATATTGTTGGTTTACTATTTGTAAAAAGACATTAATTAACTTGACTAACACCCAAGAAGTAGCTCCTGTTGAATAACTGATTCTTTTAACGA]




>consensus_7527#4
TATTTCACTTCCACCCAAGTCAACCTTCAGGCACTAGTTTTTTTTCAGACAATGGTCCGA
TTTCCAGTGAATTTCCATTCAAATTAGAAACACTGGATACAGCCTTGACAGATGGTAAAT
GATATTGTTGGTTTACTATTTGTAAAAAGACATTAATTAACTTGACTAACACCCAAGAAG
TAGCTCCTGTTGAATAACTGATTCTTTTAACGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7527#0      GTTTCAAATAAATGAACTATGGTGTACTTGAGAACATCTTCAATATCATCCGAAATTAAC 60
consensus_7527#4      ------------------------------------------------------------
consensus_7527#3      ------------------------------------------------------------
consensus_7527#1      ---------------------------------------------------TGCCAACAG 9
consensus_7527#2      ------------------------------------------------------------
                                                                                  

consensus_7527#0      ACGACGGACTACACCGCGAATTCGTGTATGGAGGACAGCTCAAAGATGCTTTCGAAGTGA 120
consensus_7527#4      -----------------------------------------------------------T 1
consensus_7527#3      ------------------------------------TTTTTTTTTTTTTTTTTACAGGAA 24
consensus_7527#1      AGTTAGTAATACAGTTGTTAGGAAGGTAAGGATGGCAAATTGATTAATGATCAGTTGAGA 69
consensus_7527#2      --------------------CCCATCACTCCGTCGAAGACGTATCACCAACCCGGAAATC 40
                                                                                  

consensus_7527#0      GGACCGGTGTCAGACAAGGCTGTTTACTCTCGCACTTCCATTTT-CTTCTGGTGGTTGAC 179
consensus_7527#4      ATTTCACTTCCACCCAAGTCAACCT--TCAGGCACTAGT-TTTT-TTTCAGACAATGGTC 57
consensus_7527#3      ATTTCTATTGGCAGCAAATGCGCATA---TGGCAGAAAT-ACAT-CTACACGTACAGAAC 79
consensus_7527#1      TGGCCGGAACGTGTTACGTATGCCCAACCGCCGACGTGCAATGC-TTTATGGTGTAGGAG 128
consensus_7527#2      ACAACAGTTTACAATCACCTCACCCCACTTCCCATTTCCAGCTTGTTGTTGTTGGTAGTG 100
                          *                            *            *             

consensus_7527#0      CGGATTATGAAGACCTTCATATCACCGGGAAAGCACGGCATT-CAATGGACAGTTTGCAT 238
consensus_7527#4      CGATTTCCAGTGAATTTCCATTCAAATTAGAAACACTGGATA-CAGCC-----TTGACAG 111
consensus_7527#3      TTAAAGAGAAAATATATCCGTCAAATCAAGAACAGATATATAACAGTAAAAAGTAACCAT 139
consensus_7527#1      TTAGTAGAAAGAAAGCTAGAGGCGGCCAAACCAAGACGTAGCACATCCGTGAAATCAACG 188
consensus_7527#2      GTAATAACAATAACAACACCTCCAACAAACTACACCACCAGCAAAACACAACATTCCCAC 160
                                                             *    *               

consensus_7527#0      ACAACTA--AACGATTTGGGCTTCGCAGATTACTTGGCCTTTCTATCTCATACATACGAA 296
consensus_7527#4      ATGG-TA--AATGATATTG--------------TTGGT-TTACTATTT-GTAAAAAGACA 152
consensus_7527#3      AAAACTGGGAACAATTGTGACAATTCAA---AGTTAAGAACACTAATT-----ATAATTA 191
consensus_7527#1      ACAATTG-----GACTGAGCCATGCGGGTAGGTTGGGATTCGCGAGATGATAGCAATTGA 243
consensus_7527#2      TTACACA----CCATCTTAATCTCTTCTTAATTCATCACGAAGCAGTTTATAAAACACTG 216
                                   *                              *  *            

consensus_7527#0      CAAATGAAAATGAAGACAACTAGTGTAGCGGCAGCCTCTGCAGCAGTAGGCCTCAACATA 356
consensus_7527#4      TTAATTAACTTGACTAACACCCAAGAAGTAGCTCCTGTTGAATAACTGATTCTTTTAACG 212
consensus_7527#3      ATTATGAAGTTAAGGGATATTATAACCGAACGTATTAATGAGCATCCGTAAGTGCAACAA 251
consensus_7527#1      TGGTTAAAGACCTTGAATGACATGGCTCAAAATCGT-TTGCAATGGCGNAAGTTCATCCA 302
consensus_7527#2      GAGGAACGAATGACTGAGGGAAGTATTGCACAGTTGTACAGTGAAGGAGGACAATGAATA 276
                                                                                  

consensus_7527#0      CACAAAGGAAAAAGCATGATCCTCAAATACAACACGGAGAACACCAAATCAATCACACTT 416
consensus_7527#4      A----------------------------------------------------------- 213
consensus_7527#3      CTCCGGGTAATTGTTTACCTTCGAGAATTCAAGACTAGCACCACCACCAGTACTGACATG 311
consensus_7527#1      CTGTTTGTGCTCTCCCAAATTATAATCTGAATTCTTTATATCAATATTTTTTTTTTCTTT 362
consensus_7527#2      CTGGAGGCGATGTACACGGACCGGAGAT----CGTGGGAATTGAAGTGTAAATGTGTTAG 332
                                                                                  

consensus_7527#0      AATGGAGAAGCTCTAGAAGATGTGGAATCTTTCACGTACCTGGGAAGCATCATCGATGAA 476
consensus_7527#4      ------------------------------------------------------------
consensus_7527#3      ACTAACTTTGTCTTCTGTGTCCCATTTGGCGCAGCATGTTGCGGTGTCACCACCA----- 366
consensus_7527#1      CCAAATTTATTTCACTGGATTATACTCCTTGAATAATATCTTCAAACCCTAATCTTTCAC 422
consensus_7527#2      TGGGTATCGAGCGTGTTGGTCCCACTGATTGAATTGTGTTAGTGGTT------------- 379
                                                                                  

consensus_7527#0      CAATGAGGATCTGATACAGACGTAAAGGCAAGGATCGGCAAATCAAGGACAGCATCCCTA 536
consensus_7527#4      ------------------------------------------------------------
consensus_7527#3      ------------------------------------------------------------
consensus_7527#1      GTTAATGCCTATACTCTTACTGCTTTTACCACACGGGATTTTGATCG------------- 469
consensus_7527#2      ------------------------------------------------------------
                                                                                  

consensus_7527#0      CAGTTGTAGAACATATGGAACCCANNAACACCCTTAACCAATATCAAAGTGACAATCTTN 596
consensus_7527#4      ------------------------------------------------------------
consensus_7527#3      ------------------------------------------------------------
consensus_7527#1      ------------------------------------------------------------
consensus_7527#2      ------------------------------------------------------------
                                                                                  

consensus_7527#0      CATACG 602
consensus_7527#4      ------
consensus_7527#3      ------
consensus_7527#1      ------
consensus_7527#2      ------