cluster # 7529

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Schistosoma mansoni
cluster # 7529 cluster # 7529 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7529#0 length = 422 sequences # 4

consensus_7529#1 length = 102 sequences # 1

consensusID : consensus_7529#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 422
fasta sequence

                              [GATTTA-TTTCTAATGAACTAACCAATTTGTTGTATACATGTACAGTACAACAGTCAGTTTTATTATAGACGAATGATTTATCCAATGTATTTCACTCACAACAACATGATTATGTTTGTTCAATCCAAATGTTATGAACTTCATAAAGCTCATTTTATACACTCAGAGTTGTATTGGAAATGTCATTTGCTTCCATACTACTTGGAAATAGGTTTCTCCAAAATATGATAACAGCAAATATAATTCTATCAATTACATTTTCACCAGTATCATCTGATTTTAAATTTTCATCATAATCTGGTTATATTAATTTGTACTTCATCCACTTTGTTAGTTTGATTGTTTAAAGATACTGGTGTCGATGTCATTTCCTGTTGACATATCACATATTGTGCCAAGAACAACAATACATCATTCGGATT]

[+] EMBL AI740209             [GATTTA TTTCTAATGAACTAACCAATTTGTTGTATACATGTACAGTACAACAGTCAGTTTTATTATAGACGAATGATTTATCCAATGTATTTCACTCACAACAACATGATTATGTTTGTTCAATCCAAATGTTATGAACTTCATAAAGCTCATTTTATACACTCAGAGTTGTATTGGAAATGTCATTTGCTTCCATACTACTTGGAAATAGGTTTCTCCAAAATATGATAACAGCAAATATAATTCTATCAATTACATTTTCACCAGTATCATCTGATTTTAAATTTTCATCATAATCTGGTTATATTAATTTGTACTTCATCCACTTTGTTAGTTTGATTGTTTAAAGATACTGGTGTCGATGTCATTTCCTGTTGACATATCACATATTGTGCCAAGAACAACAATACATCATTCGGATT]
[-] EMBL AI381066             [ ATTTA TTTCTAATGAACTAACCAATTTGTTGTATACATGTACAGTACAACAGTCAGTTTTATTATAGACGAATGATTTATCCAATGTATTTC                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL AI740361             [  TTTA TTTCTAATGAACTAACCAATTTGTTGTATACATGTACAGTACAACAGTCAGTTTTATTATAGACGAATGATTTATCCAATGTATTTCACTCACAACAACATGATTATGTTTGTTCAATCCAAATGTTATGAACTTCATAAAGCTCATTTTATACACTCAGAGTTGTATTGGAA                                                                                                                                                                                                                                                   ]
[-] EMBL AI618970             [  gTTATTTTCTAATGAACTAACCAATTTGTTGT TTCATGTACAGTACAACAGTCAGTTTTATTATAGACGAATGATTTATCCAATGTATTTCACTCACAACAACATGATTATGTTTGTTCAATCCAAATGTTATGAACTTCATAAAGCTCATTTTATACACTCAGAGTTGTATTGGAAATGTCATTTGCTTCCATACTACTTGGAAATAGGTTTCTCAAAAATATGATAACAGCAA                                                                                                                                                                                         ]




>consensus_7529#0
GATTTATTTCTAATGAACTAACCAATTTGTTGTATACATGTACAGTACAACAGTCAGTTT
TATTATAGACGAATGATTTATCCAATGTATTTCACTCACAACAACATGATTATGTTTGTT
CAATCCAAATGTTATGAACTTCATAAAGCTCATTTTATACACTCAGAGTTGTATTGGAAA
TGTCATTTGCTTCCATACTACTTGGAAATAGGTTTCTCCAAAATATGATAACAGCAAATA
TAATTCTATCAATTACATTTTCACCAGTATCATCTGATTTTAAATTTTCATCATAATCTG
GTTATATTAATTTGTACTTCATCCACTTTGTTAGTTTGATTGTTTAAAGATACTGGTGTC
GATGTCATTTCCTGTTGACATATCACATATTGTGCCAAGAACAACAATACATCATTCGGA
TT

consensusID : consensus_7529#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 102
fasta sequence

                              [GTTGAAATACATTGGGATAAATCATTCGGTCTATAATAAAACTGGACTGGTTGTACTGGTACATGTATACAACAAATTGGGTTAGTTCATTAAGAAATAAAT]

[+] EMBL AI974215             [GTTGAAATACATTGGGATAAATCATTCGGTCTATAATAAAACTGGACTGGTTGTACTGGTACATGTATACAACAAATTGGGTTAGTTCATTAAGAAATAAAT]




>consensus_7529#1
GTTGAAATACATTGGGATAAATCATTCGGTCTATAATAAAACTGGACTGGTTGTACTGGT
ACATGTATACAACAAATTGGGTTAGTTCATTAAGAAATAAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7529#0      GATTTATTTCTAATGAACTAACCAATTTGTTGTATACATGTACAGTACAACAGTCAGTTT 60
consensus_7529#1      ------------------------------------------------------------
                                                                                  

consensus_7529#0      TATTATAGACGAATGATTTATCCAATGTATTTCACTCACAACAACATGATTATGTTTGTT 120
consensus_7529#1      ------------------------------------------------------------
                                                                                  

consensus_7529#0      CAATCCAAATGTTATGAACTTCATAAAGCTCATTTTATACACTCAGAGTTGTATTGGAA- 179
consensus_7529#1      ------------------------------------------GTTGAAATACATTGGGAT 18
                                                                   **  *  ***** * 

consensus_7529#0      ATGTCATTTGCTTCCATACTACTTGGAAATAGGTTTCTCCAAAATATGATAACAGCAAAT 239
consensus_7529#1      AAATCATTCGGT-CTATAATAAAACTGGACTGGTTGTACTGGTACATGTATACAACAAAT 77
                      *  ***** * * * *** **       *  ****   *    * ***   *** *****

consensus_7529#0      ATAATTCTATCAATTACATTTTCACCAGTATCATCTGATTTTAAATTTTCATCATAATCT 299
consensus_7529#1      TGGGTTAGTTCATTAAGAAATAAAT----------------------------------- 102
                          **   *** * * *  *  *                                    

consensus_7529#0      GGTTATATTAATTTGTACTTCATCCACTTTGTTAGTTTGATTGTTTAAAGATACTGGTGT 359
consensus_7529#1      ------------------------------------------------------------
                                                                                  

consensus_7529#0      CGATGTCATTTCCTGTTGACATATCACATATTGTGCCAAGAACAACAATACATCATTCGG 419
consensus_7529#1      ------------------------------------------------------------
                                                                                  

consensus_7529#0      ATT 422
consensus_7529#1      ---