These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7529#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 422 fasta sequence [GATTTA-TTTCTAATGAACTAACCAATTTGTTGTATACATGTACAGTACAACAGTCAGTTTTATTATAGACGAATGATTTATCCAATGTATTTCACTCACAACAACATGATTATGTTTGTTCAATCCAAATGTTATGAACTTCATAAAGCTCATTTTATACACTCAGAGTTGTATTGGAAATGTCATTTGCTTCCATACTACTTGGAAATAGGTTTCTCCAAAATATGATAACAGCAAATATAATTCTATCAATTACATTTTCACCAGTATCATCTGATTTTAAATTTTCATCATAATCTGGTTATATTAATTTGTACTTCATCCACTTTGTTAGTTTGATTGTTTAAAGATACTGGTGTCGATGTCATTTCCTGTTGACATATCACATATTGTGCCAAGAACAACAATACATCATTCGGATT] [+] EMBL AI740209 [GATTTA TTTCTAATGAACTAACCAATTTGTTGTATACATGTACAGTACAACAGTCAGTTTTATTATAGACGAATGATTTATCCAATGTATTTCACTCACAACAACATGATTATGTTTGTTCAATCCAAATGTTATGAACTTCATAAAGCTCATTTTATACACTCAGAGTTGTATTGGAAATGTCATTTGCTTCCATACTACTTGGAAATAGGTTTCTCCAAAATATGATAACAGCAAATATAATTCTATCAATTACATTTTCACCAGTATCATCTGATTTTAAATTTTCATCATAATCTGGTTATATTAATTTGTACTTCATCCACTTTGTTAGTTTGATTGTTTAAAGATACTGGTGTCGATGTCATTTCCTGTTGACATATCACATATTGTGCCAAGAACAACAATACATCATTCGGATT] [-] EMBL AI381066 [ ATTTA TTTCTAATGAACTAACCAATTTGTTGTATACATGTACAGTACAACAGTCAGTTTTATTATAGACGAATGATTTATCCAATGTATTTC ] [-] EMBL AI740361 [ TTTA TTTCTAATGAACTAACCAATTTGTTGTATACATGTACAGTACAACAGTCAGTTTTATTATAGACGAATGATTTATCCAATGTATTTCACTCACAACAACATGATTATGTTTGTTCAATCCAAATGTTATGAACTTCATAAAGCTCATTTTATACACTCAGAGTTGTATTGGAA ] [-] EMBL AI618970 [ gTTATTTTCTAATGAACTAACCAATTTGTTGT TTCATGTACAGTACAACAGTCAGTTTTATTATAGACGAATGATTTATCCAATGTATTTCACTCACAACAACATGATTATGTTTGTTCAATCCAAATGTTATGAACTTCATAAAGCTCATTTTATACACTCAGAGTTGTATTGGAAATGTCATTTGCTTCCATACTACTTGGAAATAGGTTTCTCAAAAATATGATAACAGCAA ] consensusID : consensus_7529#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 102 fasta sequence [GTTGAAATACATTGGGATAAATCATTCGGTCTATAATAAAACTGGACTGGTTGTACTGGTACATGTATACAACAAATTGGGTTAGTTCATTAAGAAATAAAT] [+] EMBL AI974215 [GTTGAAATACATTGGGATAAATCATTCGGTCTATAATAAAACTGGACTGGTTGTACTGGTACATGTATACAACAAATTGGGTTAGTTCATTAAGAAATAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7529#0 GATTTATTTCTAATGAACTAACCAATTTGTTGTATACATGTACAGTACAACAGTCAGTTT 60 consensus_7529#1 ------------------------------------------------------------ consensus_7529#0 TATTATAGACGAATGATTTATCCAATGTATTTCACTCACAACAACATGATTATGTTTGTT 120 consensus_7529#1 ------------------------------------------------------------ consensus_7529#0 CAATCCAAATGTTATGAACTTCATAAAGCTCATTTTATACACTCAGAGTTGTATTGGAA- 179 consensus_7529#1 ------------------------------------------GTTGAAATACATTGGGAT 18 ** * ***** * consensus_7529#0 ATGTCATTTGCTTCCATACTACTTGGAAATAGGTTTCTCCAAAATATGATAACAGCAAAT 239 consensus_7529#1 AAATCATTCGGT-CTATAATAAAACTGGACTGGTTGTACTGGTACATGTATACAACAAAT 77 * ***** * * * *** ** * **** * * *** *** ***** consensus_7529#0 ATAATTCTATCAATTACATTTTCACCAGTATCATCTGATTTTAAATTTTCATCATAATCT 299 consensus_7529#1 TGGGTTAGTTCATTAAGAAATAAAT----------------------------------- 102 ** *** * * * * * consensus_7529#0 GGTTATATTAATTTGTACTTCATCCACTTTGTTAGTTTGATTGTTTAAAGATACTGGTGT 359 consensus_7529#1 ------------------------------------------------------------ consensus_7529#0 CGATGTCATTTCCTGTTGACATATCACATATTGTGCCAAGAACAACAATACATCATTCGG 419 consensus_7529#1 ------------------------------------------------------------ consensus_7529#0 ATT 422 consensus_7529#1 --- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||