cluster # 7544

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Schistosoma mansoni
cluster # 7544 cluster # 7544 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7544#0 length = 1213 sequences # 3

consensus_7544#1 length = 728 sequences # 2

consensusID : consensus_7544#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1213
fasta sequence

                              [ATAAAAAGCTGGGTTCGGGGTTTTCGTAATTGATGGAACCTCCACCTAGATTATATACTTACAAGGGTTTGTTCACTGAAAGTCGGTCACTGGACTTAACACTAAAAATTGTGTCGACTATACTGTCTTTTCTAGTCTTTTTATTCTTACTAGCTTGGCGTATTTCAAAAAAACATTATAATAATCCCCCGATAGACAAGCGTTTATGTTTTCACAGTTTCAACGATCTATGCCAAAATGGATCATTCCGCTTGACATCATTCTATGCATCTAGAAGACAAAAGTTTCCCCTGGTAAGGGGTTACTTAAATAAACAAAATGTCCTTTTTGTTGAAGATTGGAAATTAATCACTCTTTATGACCGATTTCCTCTGTTAGATCTACACTATTCCTCAGCTCCAAAATCATTCAGACGGAAATGGTGTGGCTTAATGATTGCTGATGATACTTTACAGTTTAGATCTGAATTGATTGAGCTGGTGTTGTTGGCCTTCAATAGTTTACCAATTAAGATATTCGAACGTATCGGCCATTTAGGAGCTGATCCTCAATTACTTGGCTCTATATTAGTTAGTACTAACAACTGTGCAAAATTTGAAAAACGTCTAGACATGTGGATA-TGTAGTGTGTATTCAGAAGTATTTTTTTTCGGTCCATCAGAAATTTTTTGCGAAACTGCTTCAGACAATACATTTTGTTTTGGAAGAGAAAAATTCATTTTAGATCTAAGAGAATGCATAATCTCACTGGAATCCTTACATATACATGGGAACTTTATAAAAAAGTCTGATGCATTTAAAGCAATCTTACAGCCATTTTCCGACAACCCATCATCTCATAATACGAATGAGTTAATAACCATGTTTCACAGTCTTATATATCCCTTAATTCATTATTATTTGGATAAATTTCTGAATAGTGAAATAAAAGAAAATATTAACA-AT-TCAGATGGTAATCTAGAATATTTACAAACAAGCGAGAAACCAACAAATCTATTATTACAACTCATTAATACATATCATTATTTGAAAGAGGAAGGAAGTTCCAATGAATTCCTAACATTAACACATATTATTCATTTACTTGGTGAATGTTGTTTATAACTAGGTATATAATGAATAAGACTTTAAAAACTCTATTGACAGTTCTAGCTATTAAACCAAAATGGGCAAGATATGTAAGAAAAAGATGTAAACAGTTTTTTAGAAGTCCA]

[+] EMBL CD080048             [ATAAAAAGCTGGGTTCGGGGTTTTCGTAATTGATGGAACCTCCACCTAGATTATATACTTACAAGGGTTTGTTCACTGAAAGTCGGTCACTGGACTTAACACTAAAAATTGTGTCGACTATACTGTCTTTTCTAGTCTTTTTATTCTTACTAGCTTGGCGTATTTCAAAAAAACATTATAATAATCCCCCGATAGACAAGCGTTTATGTTTTCACAGTTTCAACGATCTATGCCAAAATGGATCATTCCGCTTGACATCATTCTATGCATCTAGAAGACAAAAGTTTCCCCTGGTAAGGGGTTACTTAAATAAACAAAATGTCCTTTTTGTTGAAGATTGGAAATTAATCACTCTTTATGACCGATTTCCTCTGTTAGATCTACACTATTCCTCAGCTCCAAAATCATTCAGACGGAAATGGTGTGGCTTAATGATTGCTGATGATACTTTACAGTTTAGATCTGAATTGATTGAGCTGGTGTTGTTGGCCTTCAATAGTTTACCAATTAAGATATTCGAACGTATCGGCCATTTAGGAGCTGATCCTCAATTACTTGGCTCTATATTAGTTAGTACTAACAACTGTGCAAAATTTGAAAAACGTCTAGACATGTGGATANTGTAGTGTGTATTCAGAAGTATTTTTTTTCGGTCCATCAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BF936787             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CGGCCATTTACGAGCTGATCCTCAATTACTTGGCTCTATATTAGTTAGTACTAACAACTGTGCAAAATTTGAAAAACGTCTAGACATGTGGATA TGTAGTGTGTATTCAGAAGTATTTTTTTTCGGTCCATCAGAAATTTTTTGCGAAACTGCTTCAGACAATACATTTTGTTTTGGAAGAGAAAAATTCATTTTAGATCTAAGAGAATGCATAATCTCACTGGAATCCTTACATATACATGGGAACTTTATAAAAAAGTCTGATGCATTTAAAGCAATCTTACAGCCATTTTCCGACAACCCATCATCTCATAATACGAATGAGTTAATAACCATGTTTCACAGTCTTATATATCCCTTAATTCATTATTATTTGGATAAATTTCTGAATAGTGAAATAAAAGAAAATATTAACA AT TCAGATGGTAATCTAGAATATTTACAAACAAGCGAGAAACCAACAAATCTATTATTACAACTCATTAATACATATCATTATTTGAAAGAGGAAGGAAGTTCCAATGAATTCCTAACATTAACACATATTATTCATTTACTTGGTGAATGTTGTTTATAACTAGGTATATAATGAATAAGACTTTAAAAACTCTATTGACAGTTCTAGCTATTAAACCAAAATGGGCAAGATATGTAAGAAAAAGATGTAAACAGTTTTTTAGAAGTCCA]
[-] EMBL CD069405             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             gatataTCAATGA TTGGCTCTATATTAGTTAGTACTAACAACTGTGCAAAATTTGAAAAACGTCTAGACATGTGGATA TGTAGTGTGTATTCAGAAGTATTTTTTTTCGGTCCATCAGAAATTTTTTGCGAAACTGCTTCAGACAATACATTTTGTTTTGGAAGAGAAAAATTCATTTTAGATCTAAGAGAATGCATAATCTCACTGGAATCCTTACATATACATGGGAACTTTATAAAAAAGTCTGATGCATTTAAAGCAATCTTACAGCCATTTTCCGACAACCCATCATCTCATAATACGAATGAGTTAATAACCATGTTTCACAGTCTTATATATCCCTTAATTCATTATTATTTGGATAAATTTCTGAATAGTGAAATAAAAGAAAATATTAACACATGTCAGAT                                                                                                                                                                                                                                                                       ]




>consensus_7544#0
ATAAAAAGCTGGGTTCGGGGTTTTCGTAATTGATGGAACCTCCACCTAGATTATATACTT
ACAAGGGTTTGTTCACTGAAAGTCGGTCACTGGACTTAACACTAAAAATTGTGTCGACTA
TACTGTCTTTTCTAGTCTTTTTATTCTTACTAGCTTGGCGTATTTCAAAAAAACATTATA
ATAATCCCCCGATAGACAAGCGTTTATGTTTTCACAGTTTCAACGATCTATGCCAAAATG
GATCATTCCGCTTGACATCATTCTATGCATCTAGAAGACAAAAGTTTCCCCTGGTAAGGG
GTTACTTAAATAAACAAAATGTCCTTTTTGTTGAAGATTGGAAATTAATCACTCTTTATG
ACCGATTTCCTCTGTTAGATCTACACTATTCCTCAGCTCCAAAATCATTCAGACGGAAAT
GGTGTGGCTTAATGATTGCTGATGATACTTTACAGTTTAGATCTGAATTGATTGAGCTGG
TGTTGTTGGCCTTCAATAGTTTACCAATTAAGATATTCGAACGTATCGGCCATTTAGGAG
CTGATCCTCAATTACTTGGCTCTATATTAGTTAGTACTAACAACTGTGCAAAATTTGAAA
AACGTCTAGACATGTGGATATGTAGTGTGTATTCAGAAGTATTTTTTTTCGGTCCATCAG
AAATTTTTTGCGAAACTGCTTCAGACAATACATTTTGTTTTGGAAGAGAAAAATTCATTT
TAGATCTAAGAGAATGCATAATCTCACTGGAATCCTTACATATACATGGGAACTTTATAA
AAAAGTCTGATGCATTTAAAGCAATCTTACAGCCATTTTCCGACAACCCATCATCTCATA
ATACGAATGAGTTAATAACCATGTTTCACAGTCTTATATATCCCTTAATTCATTATTATT
TGGATAAATTTCTGAATAGTGAAATAAAAGAAAATATTAACAATTCAGATGGTAATCTAG
AATATTTACAAACAAGCGAGAAACCAACAAATCTATTATTACAACTCATTAATACATATC
ATTATTTGAAAGAGGAAGGAAGTTCCAATGAATTCCTAACATTAACACATATTATTCATT
TACTTGGTGAATGTTGTTTATAACTAGGTATATAATGAATAAGACTTTAAAAACTCTATT
GACAGTTCTAGCTATTAAACCAAAATGGGCAAGATATGTAAGAAAAAGATGTAAACAGTT
TTTTAGAAGTCCA

consensusID : consensus_7544#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 728
fasta sequence

                              [CTCCAGGCCAANAATTTGGCACGAGGCTGAATAGTGAAATAAAAGAAAATATTAACAATTCAGATGGTAATCTAGAATATTTACAAACAAGCGAGAAACCAACAAATCTATTATTACAACTCATTAATACATATCATTATTTGAAAGAGGAAGGAAGTTCCAATGAATTCCTAACATTAACACATATTATTCATTTACTTGGTGAATGTTGTTTAATAACTAGGTATATAATGAATAAGACTTTAAAAACTCTATTGACAGTTCTAGCTATTAAACCAAAATGGCAAGATAATGTAAGAAAAGAATGTAAACAGTTTTTAGAAGTCCAATATAATCATAAAACACAAAAGTCTACATCATTATGCAGCCATTCTATATCACATCTTTGCATGTCTTTGGAGCACACACAATGTTTGGTTTGGACAAAGGCTTTAATTCAAGAGACGCTGCGTTTATGTGTACCTGGTTGGCCATTTGGTTGTTTACGTCAAGCCCTCCGCGATGGGGAAATACTAAAGCAAGACTTTGCTGAAGGAGAACTAGTGCTTTTTGATGAGCCTTCCTACTACTCAGATCCAGATTTATGGTCTGCTGATGAGAATGGAGAAGGGTCTACCAAATATCAACCTCACAGAGTATTTGATCCAAGTCGCTTCATTGAAAAACTACCCACTGCAGGAAATTCGACAATGTTGGAGTTAAGTTTACCTGTACATTGGGCGCACATG]

[+] EMBL CD081147             [CTCCAGGCCAANAATTTGGCACGAGGCTGAATAGTGAAATAAAAGAAAATATTAACAATTCAGATGGTAATCTAGAATATTTACAAACAAGCGAGAAACCAACAAATCTATTATTACAACTCATTAATACATATCATTATTTGAAAGAGGAAGGAAGTTCCAATGAATTCCTAACATTAACACATATTATTCATTTACTTGGTGAATGTTGTTTAATAACTAGGTATATAATGAATAAGACTTTAAAAACTCTATTGACAGTTCTAGCTATTAAACCAAAATGGCAAGATAATGTAAGAAAAGAATGTAAACAGTTTTTAGAAGTCCAATATAATCATAAAACACAAAAGTCTACATCATTATGCAGCCATTCTATATCACATCTTTGCATGTCTTTGGAGCACACACAATGTTTGGTTTGGACAAAGGCTTTAATTCAAGAGACGCTGCGTTTATGTGTACCTGGTTGGCCATTTGGTTGTTTACGTCAAGCCCTCCGCGATGGGGAAATACTAAAGCAAGACTTTGCTGAAGGAGAACTAGTGCTTTTTGATGAGCCTTCCTACTACTCAGATCCAGATTTATGGTCTGCTGATGAGAATGGAGAAGGGTCTACCAAATATCAACCTCACAGAGTATTTGATCCAAGTCGCTTCATTGAAAAACTACCCACTGCAGGAAATTCGACAATGTTGGAGTTAAGTTTACCTGTACATTGGGCGCACATG]
[+] EMBL CD171493             [                                                                                                                                                                                                                                                                      TCTAGCTATTAAACCAAAATGGCAAGATAATGTAAGAAAAGAATGTAAACAGTTTTTAGAAGTCCAATATAATCATAAAACACAAAAGTCTACATCATTATGCAGCCATTCTATACCACATCTTTGCATGTCTTTGGAGCACACACAATGTTTGGTTTGGACAAAGGCTTTAATTCAAGAGACGCTGCGTTTATGTGTACCTGGTTGGCCATTTGGTTGTTTACGTCAAGCCCTCCGCGATGGGGAAATACTAAAGCAAGACTNTGCTGAAGGAGAACTAGTG                                                                                                                                                                                       ]




>consensus_7544#1
CTCCAGGCCAANAATTTGGCACGAGGCTGAATAGTGAAATAAAAGAAAATATTAACAATT
CAGATGGTAATCTAGAATATTTACAAACAAGCGAGAAACCAACAAATCTATTATTACAAC
TCATTAATACATATCATTATTTGAAAGAGGAAGGAAGTTCCAATGAATTCCTAACATTAA
CACATATTATTCATTTACTTGGTGAATGTTGTTTAATAACTAGGTATATAATGAATAAGA
CTTTAAAAACTCTATTGACAGTTCTAGCTATTAAACCAAAATGGCAAGATAATGTAAGAA
AAGAATGTAAACAGTTTTTAGAAGTCCAATATAATCATAAAACACAAAAGTCTACATCAT
TATGCAGCCATTCTATATCACATCTTTGCATGTCTTTGGAGCACACACAATGTTTGGTTT
GGACAAAGGCTTTAATTCAAGAGACGCTGCGTTTATGTGTACCTGGTTGGCCATTTGGTT
GTTTACGTCAAGCCCTCCGCGATGGGGAAATACTAAAGCAAGACTTTGCTGAAGGAGAAC
TAGTGCTTTTTGATGAGCCTTCCTACTACTCAGATCCAGATTTATGGTCTGCTGATGAGA
ATGGAGAAGGGTCTACCAAATATCAACCTCACAGAGTATTTGATCCAAGTCGCTTCATTG
AAAAACTACCCACTGCAGGAAATTCGACAATGTTGGAGTTAAGTTTACCTGTACATTGGG
CGCACATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7544#0      ATAAAAAGCTGGGTTCGGGGTTTTCGTAATTGATGGAACCTCCACCTAGATTATATACTT 60
consensus_7544#1      ------------------------------------------------------------
                                                                                  

consensus_7544#0      ACAAGGGTTTGTTCACTGAAAGTCGGTCACTGGACTTAACACTAAAAATTGTGTCGACTA 120
consensus_7544#1      ------------------------------------------------------------
                                                                                  

consensus_7544#0      TACTGTCTTTTCTAGTCTTTTTATTCTTACTAGCTTGGCGTATTTCAAAAAAACATTATA 180
consensus_7544#1      ------------------------------------------------------------
                                                                                  

consensus_7544#0      ATAATCCCCCGATAGACAAGCGTTTATGTTTTCACAGTTTCAACGATCTATGCCAAAATG 240
consensus_7544#1      ------------------------------------------------------------
                                                                                  

consensus_7544#0      GATCATTCCGCTTGACATCATTCTATGCATCTAGAAGACAAAAGTTTCCCCTGG---TAA 297
consensus_7544#1      ------------------------------CTCCAGGCCAANAATTTGGCACGAGGCTGA 30
                                                    **  * * *** * ***  *  *    * *

consensus_7544#0      GGGGTTACTTAAATAAACAAAATGTCCTTTTTGTTGAAGATTGGAAATTAATCACTCTTT 357
consensus_7544#1      ATAGTGAAATAAAAGAAAATATTAACAATTCAGATGGTAATCTAGAAT--ATTTACAAAC 88
                         ** *  ****  ** * * *  *  **  * **   **    ***  **        

consensus_7544#0      ATGACCGATTTCCTCTGTTAGATCTACACTATTCCTCAGCTC-CAAAATCATTCAGACGG 416
consensus_7544#1      AAGCGAGAAACCAACAAATCTATTATTACAACTCATTAATACATATCATTATTTGAAAGA 148
                      * *   **   *  *   *  **    ** * ** * *   *  *  ** ***   * * 

consensus_7544#0      AAATGGTGTGGCTTAATGATTGCTGATGATACTTTACAGTTTAGATCTGAATTGATTGAG 476
consensus_7544#1      GGAAGGAAGTTCCAATGAATTCCTAACATTAACACATATTATTCATTT-ACTTGGTGAA- 206
                        * **     *  *   *** ** *   **    * * * *  ** * * *** *  * 

consensus_7544#0      CTGGTGTTGTTGGCCTTCAATAGTTTACCAATTAAGATATTCGAA--CGTATCGGCCATT 534
consensus_7544#1      -TGTTGTT--TAATAACTAGGTATATAATGAATAAGACTTTAAAAACTCTATTGACAGTT 263
                       ** ****  *       *    * **   * *****  **  **    *** * *  **

consensus_7544#0      -TAGGAGCTGATCCTCAATTACTTGGCTCTATATTAGTT-AGTACTAACAACTGTGCAAA 592
consensus_7544#1      CTAGCTATTAAACCAAAATGGCAAGATAATGTAAGAAAAGAATGTAAACAGTTTTTAGAA 323
                       ***    * * **  ***  *  *    * **  *    * *   ****  * *   **

consensus_7544#0      ATTTGAAA-AACGTCTAGACATGTGGATATGTAGTGTGTATTCAGAAGTATTTTTTTTCG 651
consensus_7544#1      GTCCAATATAATCATAAAACACAAAAGTCTACATCAT-TATGCAG--CCATTCTATATCA 380
                       *   * * **     * ***      * *  *   * *** ***    *** * * ** 

consensus_7544#0      GTCCATCAGAAATTTTTTGCGAAACTGCTTCAGACAATACATTTTGTTTTGGAAGAGAAA 711
consensus_7544#1      CATCTTTGCATGTCTTTGGAGCA-------CACACAATG---TTTGGTTTGGACAAAGG- 429
                         * *   *  * *** * * *       ** *****    **** ******  *    

consensus_7544#0      AATTCATTTTAGATCTAAGAGAATGCATAATCTCACTGGAATCCTTACATATACATGGGA 771
consensus_7544#1      -------CTTTAATTCAAGAGA-CGCTGCGTTTATGTG---TACCTGGTTGGCCATTTGG 478
                              **  **  ******  **    * *   **   * * *   *   ***  * 

consensus_7544#0      ACTTTATAAAAAAGTCTGATGCATTTAAAGCAATCTTACAGCCATTTTCCGACAACCCAT 831
consensus_7544#1      TTGTTTACGTCAAGCCCTCCGCGAT-GGGGAAATACTAAAGCAAGACTTTGCTGAAGGAG 537
                         **      *** *    **  *    * ***  ** *** *   *  *   *   * 

consensus_7544#0      CATCTCATAATACGAATGAGTTAATAACCATGTTTCACAGTCTTATATATCCCTTAATTC 891
consensus_7544#1      AACTAGTGCTTTTTGATGAGCC--TTCCTACTACTCAGATCCAGATTTATGGTCTG-CTG 594
                       *        *    *****    *  * *    *** *  *  ** ***    *   * 

consensus_7544#0      ATTATTATTTGGATAAATTT-CTGAATAGTGAAATAAAAGAAAATATTAACAATTCAGAT 950
consensus_7544#1      ATGAGAATGGAGAAGGGTCTACCAAATATCAACCTCACAGAGTATTT----GATCCAAGT 650
                      ** *  **   **    * * *  ****   *  * * ***  ** *     ** **  *

consensus_7544#0      GGTAATCTAGAATATTTACAAACAAGCGAGAAACCAACAAATCTATTATTACAACTCATT 1010
consensus_7544#1      CGCTTCATTGAAAAACTACCCACTGCAGGAAATTCGACAATGTTGGAGTTA-AGTTTACC 709
                       *     * *** *  ***  **    *  **  * ****   *    *** *  * *  

consensus_7544#0      AATACATATCAT-TATTTGAAAGAGGAAGGAAGTTCCAATGAATTCCTAACATTAACACA 1069
consensus_7544#1      TGTACATTGGGCGCACATG----------------------------------------- 728
                        *****       *  **                                         

consensus_7544#0      TATTATTCATTTACTTGGTGAATGTTGTTTATAACTAGGTATATAATGAATAAGACTTTA 1129
consensus_7544#1      ------------------------------------------------------------
                                                                                  

consensus_7544#0      AAAACTCTATTGACAGTTCTAGCTATTAAACCAAAATGGGCAAGATATGTAAGAAAAAGA 1189
consensus_7544#1      ------------------------------------------------------------
                                                                                  

consensus_7544#0      TGTAAACAGTTTTTTAGAAGTCCA 1213
consensus_7544#1      ------------------------