cluster # 7545

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7545 cluster # 7545 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7545#0 length = 492 sequences # 1

consensus_7545#1 length = 447 sequences # 3
consensus_7545#2 length = 396 sequences # 1

consensusID : consensus_7545#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 492
fasta sequence

                              [TAATAGTAGTTTGGCGAAATCAGATACTGGGACATATTGTTTGGATGAAAGTAATGAATTTGTTTCTGAAAGCCTTAATAGGCCAGGTGGATCAAGAACTTGGTACGATATTTCCAAATTGGTATTGAATGAATATGCTTTGCCATCAGGCTCAATAAATTTGACAGGTAAGCTAAACCATCTTGGAGGCTGCAATAGAGCGGAAGAAACAGAATTTTTTCGGTGTTTCGTTTGAGATACATTACTGGATGCATAAACATAGGTTATGTAATCTTTTTCCAGATCTGCGAATTCTGCTGGATAAAGGGCTATCCAGTCAAATGATGTAGTTTGTAAAGTTGGCGGAGCCAGTGGGCCTAAATCATCATCATTTGTGCTTCCTGATTTTCCCGACTTTGAAGAGTGTCCTGGTGTGTTCAATAATAGTAGTTTGGCGAAATCAGATACTGGGACATATTGTTTGGATGAAAGTAATGAATTTGTTTCTGAAAG]

[+] EMBL CD189037             [TAATAGTAGTTTGGCGAAATCAGATACTGGGACATATTGTTTGGATGAAAGTAATGAATTTGTTTCTGAAAGCCTTAATAGGCCAGGTGGATCAAGAACTTGGTACGATATTTCCAAATTGGTATTGAATGAATATGCTTTGCCATCAGGCTCAATAAATTTGACAGGTAAGCTAAACCATCTTGGAGGCTGCAATAGAGCGGAAGAAACAGAATTTTTTCGGTGTTTCGTTTGAGATACATTACTGGATGCATAAACATAGGTTATGTAATCTTTTTCCAGATCTGCGAATTCTGCTGGATAAAGGGCTATCCAGTCAAATGATGTAGTTTGTAAAGTTGGCGGAGCCAGTGGGCCTAAATCATCATCATTTGTGCTTCCTGATTTTCCCGACTTTGAAGAGTGTCCTGGTGTGTTCAATAATAGTAGTTTGGCGAAATCAGATACTGGGACATATTGTTTGGATGAAAGTAATGAATTTGTTTCTGAAAG]




>consensus_7545#0
TAATAGTAGTTTGGCGAAATCAGATACTGGGACATATTGTTTGGATGAAAGTAATGAATT
TGTTTCTGAAAGCCTTAATAGGCCAGGTGGATCAAGAACTTGGTACGATATTTCCAAATT
GGTATTGAATGAATATGCTTTGCCATCAGGCTCAATAAATTTGACAGGTAAGCTAAACCA
TCTTGGAGGCTGCAATAGAGCGGAAGAAACAGAATTTTTTCGGTGTTTCGTTTGAGATAC
ATTACTGGATGCATAAACATAGGTTATGTAATCTTTTTCCAGATCTGCGAATTCTGCTGG
ATAAAGGGCTATCCAGTCAAATGATGTAGTTTGTAAAGTTGGCGGAGCCAGTGGGCCTAA
ATCATCATCATTTGTGCTTCCTGATTTTCCCGACTTTGAAGAGTGTCCTGGTGTGTTCAA
TAATAGTAGTTTGGCGAAATCAGATACTGGGACATATTGTTTGGATGAAAGTAATGAATT
TGTTTCTGAAAG

consensusID : consensus_7545#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 447
fasta sequence

                              [TAATAGTAGTTTGGCGAAATCAGATACTGGGACATATTGTTTGGATGAAAGTAATGAATTTGTTTCTGAAAGCCTTAATAGGCCAGGTGGATCAAGAACTTGGTACGATATTTCCAAATTGGTATTAAATGAATATGCTTTGCCATCAGGCTCAATAAATTTGACAGGTAAGCTAAACCATCTTGGAGGCACAGATAATTTGAATACTGCAATAACTGGCCGATGATCCGAAGTTTTGTATTCACTCAAACTAGTATACTTGAGTAAAACGGCCTCAGGGTGCTGTCTCCCTTTGATAGATTTGTTTGCTGGGAACTTTTCTTCCACTTCGGATGGTGACCCACGTACAGGTAATCGACGAGATGGGCTAGCTTGTCTCTGTCGGTTAGTTTCAGGAAGGTTAAGGTGGTGATCAAGAGCGAAATCTCGGTGAACCATATACAATAT]

[+] EMBL CD189412             [TAATAGTAGTTTGGCGAAATCAGATACTGGGACATATTGTTTGGATGAAAGTAATGAATTTGTTTCTGAAAGCCTTAATAGGCCAGGTGGATCAAGAACTTGGTACGATATTTCCAAATTGGTATTAAATGAATATGCTTTGCCATCAGGCTCAATAAATTTGACAGGTAAGCTAAACCATCTTGGAGGCACAGATAATTTGAATACTGCAATAACTGGCCGATGATCCGAAGTTTTGTATTCACTCAAACTAGTATACTTGAGTAAAACGGCCTCAGGGTGCTGTCTCCCTTTGATAGATTTGTTTGCTGGGAACTTTTCTTCCACTTCGGATGGTGACCCACGTACAGGTAATCGACGAGATGGGCTAGCTT                                                                         ]
[+] EMBL CD170742             [  ATAGTAGTTTGGCGAAATCAGATACTGGGACATATTGTTTGGATGAAAGTAATGAATTTGTTTCTGAAAGCCTTAATAGGCCAGGTGGATCAAGAACTTGGTACGATATTTCCAAATTGGTATTGAATGAATATGCTTTGCCATCAGGCTCAATAAATTTGACAGGTAAGCTAAACCATCTTGGAGGCACAGATAATTTGAATACTGCAATAACTGGCCGATGATCCGAAGTTTTGTATTCATTCAAACTAGTATACTTGAGTAAAACGGCCTCAGGGTGCTGTCTCCCTTTGATAGATTTGTTTGCTGGGAACTTTTCTTCCACTTCGGATGGTGACCCACGTACAGGTAATCGACGAGATGGGCTAGCTTGTCTCTGTCGGTTAGTTTCAGGAAGGTTAAGGTGGTGATCAAGAGCGAAATCTCGGTGAACCATATACAATAT]
[+] EMBL CD062794             [                                                                                                                                                                                                                                                                                                                                                                    GACGAGATGGGCTAGCTTGTCTCTGTCGGTCAGTTTCAGGGAGGTTAAGGTGGTGATCAAGAGCGAAATCTCGGTGACCCAT         ]




>consensus_7545#1
TAATAGTAGTTTGGCGAAATCAGATACTGGGACATATTGTTTGGATGAAAGTAATGAATT
TGTTTCTGAAAGCCTTAATAGGCCAGGTGGATCAAGAACTTGGTACGATATTTCCAAATT
GGTATTAAATGAATATGCTTTGCCATCAGGCTCAATAAATTTGACAGGTAAGCTAAACCA
TCTTGGAGGCACAGATAATTTGAATACTGCAATAACTGGCCGATGATCCGAAGTTTTGTA
TTCACTCAAACTAGTATACTTGAGTAAAACGGCCTCAGGGTGCTGTCTCCCTTTGATAGA
TTTGTTTGCTGGGAACTTTTCTTCCACTTCGGATGGTGACCCACGTACAGGTAATCGACG
AGATGGGCTAGCTTGTCTCTGTCGGTTAGTTTCAGGAAGGTTAAGGTGGTGATCAAGAGC
GAAATCTCGGTGAACCATATACAATAT

consensusID : consensus_7545#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 396
fasta sequence

                              [ATCTTTCAAGGTTTTATTGTCCGTTGATCAAACATTTTTTTCTATACGTTGAGTATACAATTAATCCTGTAATTTGAAAGGTAGACTATAACCCTGAGGACAATGCTTATTACGACTCATATAGACAAGACAAAATGATTGACCAGGTAAATCCTTTAATCGACTTGATTCAATTCTAGCCTTATAGAACTCTTGAAATTTCGCTTTATTTGGAGGCTGCAATAGAGCGGAAGAAACAGAATTTTTTCGGTGTTTCGTTTGAGATACATTACTGGATGCATAAACATAGGTTATGTAATCTTTTTCCAGATCTGCGAATTCTGCTGGATAAAGGGCTATCCAGTCAAATGATGTAGTTTGTAAAGTTGGCGGAGCCAGTGGGCCTAAATCATCATC]

[-] EMBL CD086165             [ATCTTTCAAGGTTTTATTGTCCGTTGATCAAACATTTTTTTCTATACGTTGAGTATACAATTAATCCTGTAATTTGAAAGGTAGACTATAACCCTGAGGACAATGCTTATTACGACTCATATAGACAAGACAAAATGATTGACCAGGTAAATCCTTTAATCGACTTGATTCAATTCTAGCCTTATAGAACTCTTGAAATTTCGCTTTATTTGGAGGCTGCAATAGAGCGGAAGAAACAGAATTTTTTCGGTGTTTCGTTTGAGATACATTACTGGATGCATAAACATAGGTTATGTAATCTTTTTCCAGATCTGCGAATTCTGCTGGATAAAGGGCTATCCAGTCAAATGATGTAGTTTGTAAAGTTGGCGGAGCCAGTGGGCCTAAATCATCATC]




>consensus_7545#2
ATCTTTCAAGGTTTTATTGTCCGTTGATCAAACATTTTTTTCTATACGTTGAGTATACAA
TTAATCCTGTAATTTGAAAGGTAGACTATAACCCTGAGGACAATGCTTATTACGACTCAT
ATAGACAAGACAAAATGATTGACCAGGTAAATCCTTTAATCGACTTGATTCAATTCTAGC
CTTATAGAACTCTTGAAATTTCGCTTTATTTGGAGGCTGCAATAGAGCGGAAGAAACAGA
ATTTTTTCGGTGTTTCGTTTGAGATACATTACTGGATGCATAAACATAGGTTATGTAATC
TTTTTCCAGATCTGCGAATTCTGCTGGATAAAGGGCTATCCAGTCAAATGATGTAGTTTG
TAAAGTTGGCGGAGCCAGTGGGCCTAAATCATCATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7545#0      -----------------------------TAATAGTAGTTTGGCGAAATCAGATACTGGG 31
consensus_7545#2      ATCTTTCAAGGTTTTATTGTCCGTTGATCAAACATTTTTTTCTATACGTTGAGTA-TACA 59
consensus_7545#1      -----------------------------TAATAGTAGTTTGGCGAAATCAGATACTGGG 31
                                                    ** * *  ***    *  *    ** *   

consensus_7545#0      ACATATTGTTTGGATGAAAGTAATGAATTTGTTTCTGAAAGCCTTAATAGGCCAGGTGGA 91
consensus_7545#2      ATTAATCCTGTAATTTGAAAGGTAGACTATAACCCTGAGGACAATGCTTATTACGACTCA 119
consensus_7545#1      ACATATTGTTTGGATGAAAGTAATGAATTTGTTTCTGAAAGCCTTAATAGGCCAGGTGGA 91
                      *   **  * *   *  **     ** * *    ****   *  *  *      *    *

consensus_7545#0      TCAAGAACTTGGTACGATATTT--CCAAATTGGTA-TTGAATGAATATGCTTTGCCATCA 148
consensus_7545#2      T-ATAGACAAGACAAAATGATTGACCAGGTAAATCCTTTAATCGACTTGATTCAATTCTA 178
consensus_7545#1      TCAAGAACTTGGTACGATATTT--CCAAATTGGTA-TTAAATGAATATGCTTTGCCATCA 148
                      * *   **  *  *  **  **  ***  *   *  ** ***  *  ** **       *

consensus_7545#0      GGCTCAATAAATTTGACAGGTAAGCTAAACCATCTTGGAGGCTGCAATAGAGCGGAAGAA 208
consensus_7545#2      GCCTTATAGAACT---CTTGAAATTTCGCTTTATTTGGAGGCTGCAATAGAGCGGAAGAA 235
consensus_7545#1      GGCTCAATAAATTTGACAGGTAAGCTAAACCATCTTGGAGGCACAGATAATTTGAATACT 208
                      * ** *   ** *   *  * **  *        ********    ***    * *    

consensus_7545#0      ACAGAATTTTTTCGGTGTTTCG---TTTGAGATACATT---ACTGG-ATGCATAAACATA 261
consensus_7545#2      ACAGAATTTTTTCGGTGTTTCG---TTTGAGATACATT---ACTGG-ATGCATAAACATA 288
consensus_7545#1      GCAATAACTGGCCGATGATCCGAAGTTTTGTATTCACTCAAACTAGTATACTTGAGTAAA 268
                       **  *  *   ** ** * **   ***   ** ** *   *** * ** * * *  * *

consensus_7545#0      --GGTTATGTAATCTTTTTCCAGATCTGCGAATTC---TGCTGGATAAAGGGCTATCCAG 316
consensus_7545#2      --GGTTATGTAATCTTTTTCCAGATCTGCGAATTC---TGCTGGATAAAGGGCTATCCAG 343
consensus_7545#1      ACGGCCTCAGGGTGCTGTCTCCCTTTGATAGATTTGTTTGCTGGGAACTTTTCTTCCACT 328
                        **        *  * *  *   *      ***    ******  *     **  *   

consensus_7545#0      TCAAATGATGTAGTTTGTAAAGTTGGCGGAGCCAGTGGGCCTAAATCATCATCATTTGTG 376
consensus_7545#2      TCAAATGATGTAGTTTGTAAAGTTGGCGGAGCCAGTGGGCCTAAATCATCATC------- 396
consensus_7545#1      TCGGATGGTGACCCACGTACAGGTAATCGA-CGAGATGGGCTAGCTTGTCTCTGTCGGTT 387
                      **  *** **      *** ** *    ** * **  ** ***  *  **          

consensus_7545#0      CTTCCTGATTTTCCCGACTTTGAAGAGTGTCCTGGTGTGTTCAATAATAGTAGTTTGGCG 436
consensus_7545#2      ------------------------------------------------------------
consensus_7545#1      AGTTTCAGGAAGGTTAAGGTGGTGATCAAGAGCGAAATCTCGGTGAACCATATACAATAT 447
                                                                                  

consensus_7545#0      AAATCAGATACTGGGACATATTGTTTGGATGAAAGTAATGAATTTGTTTCTGAAAG 492
consensus_7545#2      --------------------------------------------------------
consensus_7545#1      --------------------------------------------------------