These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7546#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 969 fasta sequence [TCCAGGCCAANAATTCGGCACGAGGCCGTTCTCAAATTCTTTTAACTCTTATCTTCTGTCATAATGAATGAGACAATAAACAGTTGAATAAGAATTTATCTTCTTAAAAATCATCGGCGTCATAGTTCTGGTCAATTACTATTATCATTCACATCATCATTATTTGTAAAATCAGTCACTTAACACTGTTGCATTGAAAGCTTACCTTTAATTGTGTTCCTACCTGTTTTTTTTCCATCCGTCTACACTTGCTCATTTTCATTATAAACATCTATATGTATTGTTGACATACAGAGAATCTTTGTATTGTTTTGTCATAATTCTTCATAATAAAGCTTATGCTGCCTTCTTTTCATTTCGTTTTTTTGCACGCTTGCTTTATTATGTCGCTGTATACACCGCAGTATCTTCTCCATATAAATAATACATTTGATTATTACAATCCTTTATACTAAGTTTTGTTCTATGTACTTTCTTTTTGCCTTACTTATTCTGCTTTGGTTAATATAATGGTTATTGTTGCTTGAATACGTGTATTTGTTGCCGATAAGCTCACGAAATGTTTTTCCTCCTTTCTTTTACTATTCATTCTCGGACCCATCATTCTACATCTGTACANTGTGTGTGTTGGCATGTGTCACATTCTATTTCATATTGGCGATAGTAGTAGTAATGATTGTTTTTATTTTTTAACTTAGATTTCTTTATTTTTTGGGAGGGAGAGAGATTATCAATAACTAGTCGCTTTTCATTATGCATCATTGTACACTTCTTTCTACATGTACTTATTTACTTGTTNCACTGAAAAGTCGTTGTTTCTGCTGCGAGTGTGTCCTACTCGTTACTACTCCAGTGTAGTATACCACTGCACTCTATTTGAATGGGGTNTTATTTTTTCTCATTACCATTGTGTACTTCAAAGACCCATTTTACAATCTTTAAACTACGGATGTTATTACCTATTACGAA] [+] EMBL CD080116 [TCCAGGCCAANAATTCGGCACGAGGCCGTTCTCAAATTCTTTTAACTCTTATCTTCTGTCATAATGAATGAGACAATAAACAGTTGAATAAGAATTTATCTTCTTAAAAATCATCGGCGTCATAGTTCTGGTCAATTACTATTATCATTCACATCATCATTATTTGTAAAATCAGTCACTTAACACTGTTGCATTGAAAGCTTACCTTTAATTGTGTTCCTACCTGTTTTTTTTCCATCCGTCTACACTTGCTCATTTTCATTATAAACATCTATATGTATTGTTGACATACAGAGAATCTTTGTATTGTTTTGTCATAATTCTTCATAATAAAGCTTATGCTGCCTTCTTTTCATTTCGTTTTTTTGCACGCTTGCTTTATTATGTCGCTGTATACACCGCAGTATCTTCTCCATATAAATAATACATTTGATTATTACAATCCTTTATACTAAGTTTTGTTCTATGTACTTTCTTTTTGCCTTACTTATTCTGCTTTGGTTAATATAATGGTTATTGTTGCTTGAATACGTGTATTTGTTGCCGATAAGCTCACGAAATGTTTTTCCTCCTTTCTTTTACTATTCATTCTCGGACCCATCATTCTACATCTGTACANTGTGTGTGTTGGCATGTGTCACATTCTATTTCATATTGGCGATAGTAGTAGTAATGATTGTTTTTATTTTTTAACTTAGATTTCTTTATTTTTTGGGAGGGAGAGAGATTATCAATAACTAGTCGCTTTTCATTATGCATCATTGTACACTTCTTTCTACATGTACTTATTTACTTGTTNCACTGAAAAGTCGTTGTTTCTGCTGCGAGTGTGTCCTACTCGTTACTACTCCAGTGTAGTATACCACTGCACTCTATTTGAATGGGGTNTTATTTTTTCTCATTACCATTGTGTACTTCAAAGACCCATTTTACAATCTTTAAACTACGGATGTTATTACCTATTACGAA] [-] EMBL CD179020 [ CTGGTCAATTACTATTATCATTCACATCATCATTATTTGTAAAATCAGTCACTTAACACTGTTGCATTGAAAGCTTACCTTTAATTGTGTTCCTACCTGTTTTTTTTCCATCCGTCTACACTTGCTCATTTTCATTATAAACATCTATATGTATTGTTGACATACAGAGAATCTTTGTATTGTTTTGTCATAATTCTTCATAATAAAGCTTATGCTGCCTTCTTTTCATTTCGTTTTTTTGCACGCTTGCTTTATTATGTCGCTGTATACGCCGCAGTATCTTCTCCATATAAATAATACATTTGATTATTACAATCCTTTATACTAAGTTTTGTTCTATGTACTTTCTTTTTGCCTTACTTATTCTGCTTTGGTTAATATAATGGTTATTGTTGCTTGAATACGTGTATTTGTTGCCGATAAGCTCACGAAAT ] consensusID : consensus_7546#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 303 fasta sequence [GTGAGTGTATATCGTTAACACCTGTACCATCAGCAAACCTAGTCTTAATGAATTAATGCAAAGAAAGTAGTTATATTCACCGTTCTCAAATTCTTTTAACTCTTATCTTCTGTCATAATGAATGAGACAATAAACAGTTGAATAAGAATTTATCTTCTTAAAAATCATCGGCGTCATAGTTCTGGTCAATTACTATTATCATTCACATCATCATTA-TTGTAAAATCAGTCACTTAACACTGTTGCATTGATAGCTTACCTTTAATTGTGTTCCTACCTGTTTTTTTTTTCATCCGTCTACACT] [-] EMBL CD139090 [GTGAGTGTATATCGTTAACACCTGTACCATCAGCAAACCTAGTCTTAATGAATTAATGCAAAGAAAGTAGTTATATTCACCGTTCTCAAATTCTTTTAACTCTTATCTTCTGTCATAATGAATGAGACAATAAACAGTTGAATAAGAATTTATCTTCTTAAAAATCATCGGCGTCATAGTTCTGGTCAATTACTATTATCATTCACATCATCATTA TTGTAAAATCAGTCACTTAACACTGTTGCATTGATAGCTTACCTTTAATTGTGTTCCTACCTGTTTTTTTTTTCATCCGTCTACACT] [-] EMBL CD139197 [GTGAGTGTATATCGTTAACACCTGTACCATCAGCAAACCTAGTCTTAATGAATTAATGCAAAGAAAGTAGTTATATTCACCGTTCTCAAATTCTTTTAACTCTTATCTTCTGTCATAATGAATGAGACAATAAACAGTTGAATAAGAATTTATCTTCTTAAAAATCATCGGCGTCATAGTTCTGGTCAATTACTATTATCATTCACATCATCATTATTTGTAAAATCAGTCACTTAACACTGTTGCATTGATAGCTTACCTTTAATTGTGTTCCTACCTGTTTTTTTTTTC ] consensusID : consensus_7546#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 199 fasta sequence [ACTAGTCGCTTTTCATTATGCATCATTGTACACTTCTTTCTACCATGTACTTATTTACTTGTTTCAACTGAAGGTCGTTGTTTTCTGCTGCGAGTGTTGTCACTACATCGTTTACCTACTACCAAGTGTAAGTATTAGACACTGACAGCTTTTACTTTGTAATGGTGTTTTTTATTTTTTTTCTTCAATTTACCATTTG] [-] EMBL CD135919 [ACTAGTCGCTTTTCATTATGCATCATTGTACACTTCTTTCTACCATGTACTTATTTACTTGTTTCAACTGAAGGTCGTTGTTTTCTGCTGCGAGTGTTGTCACTACATCGTTTACCTACTACCAAGTGTAAGTATTAGACACTGACAGCTTTTACTTTGTAATGGTGTTTTTTATTTTTTTTCTTCAATTTACCATTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7546#0 TCCAGGCCAANAATTCGGCACGAGGCCGTTCTCAAATTCTTTTAACTCTTATCTTCTGTC 60 consensus_7546#2 ------------------------------------------------------------ consensus_7546#1 ------------------------------------------------------------ consensus_7546#0 ATAATGAATGAGACAATAAACAGTTGAATAAGAATTTATCTTCTTAAAAATCATCGGCGT 120 consensus_7546#2 ------------------------------------------------------------ consensus_7546#1 ------------------------------------------------------------ consensus_7546#0 CATAGTTCTGGTCAATTACTATTATCATTCACATCATCATTATTTGTAAAATCAGTCACT 180 consensus_7546#2 ------------------------------------------------------------ consensus_7546#1 ------------------------------------------------------------ consensus_7546#0 TAACACTGTTGCATTGAAAGCTTACCTTTAATTGTGTTCCTACCTGTTTTTTTTCCATCC 240 consensus_7546#2 ------------------------------------------------------------ consensus_7546#1 ------------------------------------------------------------ consensus_7546#0 GTCTACACTTGCTCATTTTCATTATAAACATCTATATGTATTGTTGACATACAGAGAATC 300 consensus_7546#2 ------------------------------------------------------------ consensus_7546#1 ------------------------------------------------------------ consensus_7546#0 TTTGTATTGTTTTGTCATAATTCTTCATAATAAAGCTTATGCTGCCTTCTTTTCATTTCG 360 consensus_7546#2 ------------------------------------------------------------ consensus_7546#1 ------------------------------------------------------------ consensus_7546#0 TTTTTTTGCACGCTTGCTTTATTATGTCGCTGTATACACCGCAGTATCTTCTCCATATAA 420 consensus_7546#2 ------------------------------------------------------------ consensus_7546#1 ------------------------------------------------------------ consensus_7546#0 ATAATACATTTGATTATTACAATCCTTTATACTAAGTTTTGTTCTATGTACTTTCTTTTT 480 consensus_7546#2 ------------------------------------------------------------ consensus_7546#1 ------------------------------------------------------------ consensus_7546#0 GCCTTACTTATTCTGCTTTGGTTAATATAATGGTTATTGTTGCTTGAATACGTGTATTTG 540 consensus_7546#2 ------------------------------------------------------------ consensus_7546#1 ------------------------------------------------------------ consensus_7546#0 TTGCCGATAAGCTCACGAAATGTTTTTCCTCCTTTCTTTTACTATTCATTCTCGGACCCA 600 consensus_7546#2 ------------------------------------------------------------ consensus_7546#1 ------------------------------------------------------------ consensus_7546#0 TCATTCTACATCTGTACANTGTGTGTGTTGGCATGTGTCACATTCTATTTCATATTGGCG 660 consensus_7546#2 ------------------------------------------------------------ consensus_7546#1 ------------------------------------GTGAGTGTATATCGTTAACACCTG 24 consensus_7546#0 ATAGTAGTAGTAATGATTGTTTTTATTTTTTAACTTAGATTTCTTTATTTTTTGGGAGGG 720 consensus_7546#2 ------------------------------------------------------------ consensus_7546#1 TACCATCAGCAAACCTAGTCTTAATGAATTAATGCAAAGAAAGTAGTTATATTCACCGTT 84 consensus_7546#0 AGAGAGATTATCAATAACTAGTCGCTTTTCATTATGCATCATTGTACACTTCTTTCTAC- 779 consensus_7546#2 ----------------ACTAGTCGCTTTTCATTATGCATCATTGTACACTTCTTTCTACC 44 consensus_7546#1 CTCAAATTCTTTTAACTCTTATCTTCTGTCATAATGAATGAGACAATAAACAGTTGAAT- 143 ** ** * **** *** ** * * * ** * consensus_7546#0 ATGTACTTATTTACTTGTTNCACTGAAAAGTCGTTGTTT-CTGCTGCGAGTGTGTCCTAC 838 consensus_7546#2 ATGTACTTATTTACTTGTTTCAACTGAAGGTCGTTGTTTTCTGCTGCGAGTGTTGTCACT 104 consensus_7546#1 AAGAATTTATCTTCTTAAAAATCATCGGCGTCATAGTTCTGGTCAATTACTATTATCATT 203 * * * **** * *** *** * *** * * * * * consensus_7546#0 -TCGTTACTACTCCAGTGTAGTATACCACTGCACTCTATTTGAATGGGGTNTTATTTTTT 897 consensus_7546#2 -ACATCGTTTACCTACTACCAAGTGTAA--GTATTAGACACTGACAGC-TTTTACTTTGT 160 consensus_7546#1 CACATCATCA--TTATTGTAAAATCAGT---CACTTAACACTGTTGCATTGATAGCTTAC 258 * * * * * * * * * ** ** consensus_7546#0 CTC-ATTACCATTGTG-----TACTTCAAAGACCCATTTTACAATCTTTAAACTACGGAT 951 consensus_7546#2 ----AATGGTGTTTTT-----TATTTTTTTTCTTCAATTTACCATTTG------------ 199 consensus_7546#1 CTTTAATTGTGTTCCTACCTGTTTTTTTTTTCATCCGTCTACACT--------------- 303 * * ** * ** * * *** * consensus_7546#0 GTTATTACCTATTACGAA 969 consensus_7546#2 ------------------ consensus_7546#1 ------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||