cluster # 7547

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Schistosoma mansoni
cluster # 7547 cluster # 7547 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7547#0 length = 609 sequences # 2

consensus_7547#1 length = 338 sequences # 3

consensusID : consensus_7547#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 609
fasta sequence

                              [ACACGAAAGAGATGCTGCTCAAGGTGACGACGTCTTAGTTATGCTTGAAAAGGAACGTGAGAGACTTAAGTCAGAGGTTGAGTATGAAAAACTGCAGAACAAAAAGCTTACCCGTGACTTGAGGCGTGTAATTCTCAGTTGGAGGGAACAAAATGTTCTATGTAATAAGCAGAAGTTTGCTGCTGTTACTCTCATAAAAGAGCGCAAACGTCTTTCTAATGAACTTGCTAACGAGCAGAAACGTGTGATTGAGCTGGAGCGATCATTGCAACAGAATAGCCTCAATACGAAATCACTTAGTTCAGAATGTAACAACTCTGATAACAAGATGACTGAAACAGTTGGTTCAGATAATAACGTGTGCTGTAGCCGTCAGTGTGAGTTGTTA-CGACAAAAGCTGGCCGAGGAAACGGAGAATCGTAAAGCGATTGAGTGTAGTTTTGAAAGACTTAAGGCAGATTATCAAAGACTGGTA-TCCGAATCTTATTCCAAGGATACTACCAGCCATCCTTCTTCAAAAGATTCAATTGGTGTTAAGGCTCCTTGGGTTAACGGCCATGGAGTTCTACCTGAAAATTTTAATAATCCTGAGTCCCCCACCTGGAATTT]

[+] EMBL CD095823             [ACACGAAAGAGATGCTGCTCAAGGTGACGACGTCTTAGTTATGCTTGAAAAGGAACGTGAGAGACTTAAGTCAGAGGTTGAGTATGAAAAACTGCAGAACAAAAAGCTTACCCGTGACTTGAGGCGTGTAATTCTCAGTTGGAGGGAACAAAATGTTCTATGTAATAAGCAGAAGTTTGCTGCTGTTACTCTCATAAAAGAGCGCAAACGTCTTTCTAATGAACTTGCTAACGAGCAGAAACGTGTGATTGAGCTGGAGCGATCATTGCAACAGAATAGCCTCAATACGAAATCACTTAGTTCAGAATGTAACAACTCTGATAACAAGATGACTGAAACAGTTGGTTCAGATAATAACGTGTGCTGTAGCCGTCAGTGTGAGTTGTTA CGACAAAAGCTGGCCGAGGAAACGGAGAATCGTAAAGCGATTGAGTGTAGTTTTGAAAGACTTAAGGCAGATTATCAAAGACTGGTA TCCGAATCTTATTCCAAGGATACTA                                                                                                             ]
[+] EMBL CD152470             [                                                                                          ACTGCAGAACAAAAAGCTTACCCGTGACTTGAGGCGTGTAATTCTCAGTTGGAGGGAACAAAATGTTCTATGTAATAAGCAGAAGTTTGCTGCTGTTACTCTCATAAAAGAGCGCAAACGTCTTTCTAATGAACTTGCTAACGAGCAGAAACGTGTGATTGAGCTGGAACGATCATTGCAACACAATAGCCTCAATACGAAATCACTTAGTTCAGAATGTAACAACTCTGATAACAAGATGACTGAAACAATTGGTTCAAATAATAACGTGTGCTGTACCCGTCAGTGTGAGTTGGTACCAACAAAA CTTGGCGAGGAAACGGAAAATCGTAAAACGATTGAATGTACTTTTGAAAGACTTAAGGCAGATTATCAAAGACTGGTATTCCG ATCTTATTTCCAGGATTCTACCAGCCATCCTTCTTCAAAAGATTCAATTGGTGTTAAGGCTCCTTGGGTTAACGGCCATGGAGTTCTACCTGAAAATTTTAATAATCCTGAGTCCCCCACCTGGAATTT]




>consensus_7547#0
ACACGAAAGAGATGCTGCTCAAGGTGACGACGTCTTAGTTATGCTTGAAAAGGAACGTGA
GAGACTTAAGTCAGAGGTTGAGTATGAAAAACTGCAGAACAAAAAGCTTACCCGTGACTT
GAGGCGTGTAATTCTCAGTTGGAGGGAACAAAATGTTCTATGTAATAAGCAGAAGTTTGC
TGCTGTTACTCTCATAAAAGAGCGCAAACGTCTTTCTAATGAACTTGCTAACGAGCAGAA
ACGTGTGATTGAGCTGGAGCGATCATTGCAACAGAATAGCCTCAATACGAAATCACTTAG
TTCAGAATGTAACAACTCTGATAACAAGATGACTGAAACAGTTGGTTCAGATAATAACGT
GTGCTGTAGCCGTCAGTGTGAGTTGTTACGACAAAAGCTGGCCGAGGAAACGGAGAATCG
TAAAGCGATTGAGTGTAGTTTTGAAAGACTTAAGGCAGATTATCAAAGACTGGTATCCGA
ATCTTATTCCAAGGATACTACCAGCCATCCTTCTTCAAAAGATTCAATTGGTGTTAAGGC
TCCTTGGGTTAACGGCCATGGAGTTCTACCTGAAAATTTTAATAATCCTGAGTCCCCCAC
CTGGAATTT

consensusID : consensus_7547#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 338
fasta sequence

                              [ANAATCGTAAAGCGATTTTGTGTAGTTTTGAAAGACTTAAGGCCGATTATCAAAGACTGGTATCCGAATCTTATTCCAAGGATACTACAGCCAATCGTCCTCCAGAAGATTCAGTTGGTGTTAGTGTCTCATTGGTTAACGGTCCATGGATTTCTACTGAAAATTATAGTAGTCCTGAGTCCGTCACTGCAAATTCCTCAATCAGATTCAAACCGAATCCTCCTCAAAGACGATCATCTGATATGCCTACTTCCGTTTCACCCACCTCTAATATAATCTCATCCGGATCGATTCAAATTTCTAACAGTTCAAACCATATAGGAACTACTACTTCTGGC]

[+] EMBL CD062820             [ANAATCGTAAAGCGATTTTGTGTAGTTTTGAAAGACTTAAGGCCGATTATCAAAGACTGGTATCCGAATCTTATTCCAAGGATACTACAGCCAATCGTCCTCCAGAAGATTCAGTTGGTGTTAGTGTCTCATTGGTTAACGGTCCATGGATTTCTACTGAAAATTATAGTATTCCTGAGTCCGTCACTGCAAATTCCTCAATCAGATTCAAACCGAATCCTCCTCAAAGACGATCATCTGA                                                                                                 ]
[+] EMBL CD182451             [     CGTAAAGCGATTGAGTGTAGTTTTGAAAGACTTAAGGCAGATTATCAAAGACTGGTATCCGAATCTTATTCCAAGGATACTACAGCCAATCGTCCTCCAGAAGATTCAGTTGGTGTTAGTGTCTCATTGGTTAACGGTCCATGGATTTCTACTGAAAATTATAGTAGTCCTGAGTCCGTCACTGCAAATTCCTCAATCAGATTC                                                                                                                                 ]
[-] EMBL CD189140             [                                                                      TTATTCCAAGGATACTACAGCCAATCGTCCTCCAGAAGATTCAGTTGGTGTTAGTGTCTCATTGGTTAACGGTCCATGGATTTCTACTGAAAATTATAGTAGTCCTGAGTCCGTCACTGCAAATTCCTCAATCAGATTCAAACCGAATCCTCCTCAAAGACGATCATCTGATATGCCTACTTCCGTTTCACCCACCTCTAATATAATCTCATCCGGATCGATTCAAATTTCTAACAGTTCAAACCATATAGGAACTACTACTTCTGGC]




>consensus_7547#1
ANAATCGTAAAGCGATTTTGTGTAGTTTTGAAAGACTTAAGGCCGATTATCAAAGACTGG
TATCCGAATCTTATTCCAAGGATACTACAGCCAATCGTCCTCCAGAAGATTCAGTTGGTG
TTAGTGTCTCATTGGTTAACGGTCCATGGATTTCTACTGAAAATTATAGTAGTCCTGAGT
CCGTCACTGCAAATTCCTCAATCAGATTCAAACCGAATCCTCCTCAAAGACGATCATCTG
ATATGCCTACTTCCGTTTCACCCACCTCTAATATAATCTCATCCGGATCGATTCAAATTT
CTAACAGTTCAAACCATATAGGAACTACTACTTCTGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7547#0      ACACGAAAGAGATGCTGCTCAAGGTGACGACGTCTTAGTTATGCTTGAAAAGGAACGTGA 60
consensus_7547#1      ------------------------------------------------------------
                                                                                  

consensus_7547#0      GAGACTTAAGTCAGAGGTTGAGTATGAAAAACTGCAGAACAAAAAGCTTACCCGTGACTT 120
consensus_7547#1      ------------------------------------------------------------
                                                                                  

consensus_7547#0      GAGGCGTGTAATTCTCAGTTGGAGGGAACAAAATGTTCTATGTAATAAGCAGAAGTTTGC 180
consensus_7547#1      ------------------------------------------------------------
                                                                                  

consensus_7547#0      TGCTGTTACTCTCATAAAAGAGCGCAAACGTCTTTCTAATGAACTTGCTAACGAGCAGAA 240
consensus_7547#1      ------------------------------------------------------------
                                                                                  

consensus_7547#0      ACGTGTGATTGAGCTGGAGCGATCATTGCAACAGAATAGCCT-CAATACGAAATCACTTA 299
consensus_7547#1      ---------------------ANAATCGTAAAGCGATTTTGTGTAGTTTTGAAAGACTTA 39
                                           *  ** * **    **    *  * *    **  *****

consensus_7547#0      GTTCAGAATGTAACAACTCTGATAACAAGATGAC-TGAAACAGTTGGTTCAGATAATAAC 358
consensus_7547#1      AGGCCGATTATCA-AAGACTGGTATCCGAATCTTATTCCAAGGATACTACAGCCAAT--C 96
                         * ** * * * **  *** ** *   **    *   *  * *  * ***  ***  *

consensus_7547#0      GTGTGCTGTAGCCGTCAGTGTGAGTTGTTACGACAAAAGCTGGCCGAGGAAACGGAGAAT 418
consensus_7547#1      GTCCTCCAGAAGATTCAGTTGGTGTTAGTGTCTCA----TTGGTTAACGGTCCATGGATT 152
                      **   *   *    *****  * ***  *    **     ***   * *   *   ** *

consensus_7547#0      CGTAAAGCGATTGAGTGTAGTTTTGAAAGACTTAAGGCAGATTA-TCAA--AGACTGGTA 475
consensus_7547#1      TCTACTGAAAATTATAGTAGTCCTGAGTCCGTCACTGCAAATTCCTCAATCAGATTCAAA 212
                        **  *  * * *  *****  ***     * *  *** ***  ****  *** *   *

consensus_7547#0      TCCGAATCTTATTCCAAGGATACTACCAGCCAT-CCTTCTTCAAAAGATTCAATTGGTGT 534
consensus_7547#1      -CCGAATCCTCCTCAAAGACGATCATCTGATATGCCTACTTCC---GTTTCACCCACCTC 268
                       ******* *  ** ***   *  * * *  ** *** ****    * ****        

consensus_7547#0      TAAGGCTCCTTGGGTTAACGGCCATGGAGTTCTACCTGAAAATTTTAATAATCCTGAGTC 594
consensus_7547#1      TAATA-TAATCTCATCCGGATCGATTCAAATTT--CTAACAGTTCAAACCATATAGGAAC 325
                      ***   *  *    *      * **  *  * *  ** * * **  **  **   *   *

consensus_7547#0      CCCCACCTGGAATTT 609
consensus_7547#1      TACTACTTCTGGC-- 338
                        * ** *