cluster # 7567

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Schistosoma mansoni
cluster # 7567 cluster # 7567 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7567#0 length = 752 sequences # 2

consensus_7567#1 length = 673 sequences # 3

consensusID : consensus_7567#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 752
fasta sequence

                              [CGTTCTAATATTGATGGAAAACGTGGAGTTACGAATTACTGATAAAAGTAAATACCGGCCAGCTAATTAACTGCCAAATAGAATATGTACTGGATGCTCATTTAAAGCCCGATGAGGCAGAGGAAGGAGAGGTCAACGATTTGTCTGACCGAGAAGATAATGTCTCAGACTTTTCGAGTAAAAGCGGTTCATCAAAGTCTTATAACAACTCGTCACCAAAGCACGGAGATGAGAGCTGTACGTCAGAAATGTCACACAACGGGGGATCTTCACTTTCTACGCTAAATAAACCATCAATACGTCATATCCGGGTCCATAAAAGTAAACCTGTTAAAATAACGGAGACCACTGTTGTGTCAAAGGAAAGTAATACAAGTCCTGTTTATACCAAATCAGACGTTCGTGGTCAAATTTCGTCTCATGAAAACCAAACAACCAAGTTACAGTCTGTAGTCAATTGTGCTAGGGCTTCAGGTAAGAATATATATCACTCAAAATATTCTTTAGATCCACAAATGTCGGAGCAGGTTGAAACATTTCATACCTCAATGTTTGCTAAATCAACTAAACATCTTCAGGGTCTACGGGACTTAGAAAAGGTGCAGCTTCAGATGCAACTAGAGGTTGTAACTAATCAAGTAAACTAATATCATTTCGAATGTTTCGTGTAATGATTTACATCTAGGCTTTACATACGATAGTCTTATCTGTTTAATTTATCGCATTGCACTTATAGTGTCTTCACCCCCTGA]

[+] EMBL CD110936             [CGTTCTAATATTGATGGAAAACGTGGAGTTACGAATTACTGATAAAAGTAAATACCGGCCAGCTAATTAACTGCCAAATAGAATATGTACTGGATGCTCATTTAAAGCCCGATGAGGCAGAGGAAGGAGAGGTCAACGATTTGTCTGACCGAGAAGATAATGTCTCAGACTTTTCGAGTAAAAGCGGTTCATCAAAGTCTTATAACAACTCGTCACCAAAGCACGGAGATGAGAGCTGTACGTCAGAAATGTCACACAACGGGGGATCTTCACTTTCTACGCTAAATAAACCATCAATACGTCATATCCGGGTCCATAAAAGTAAACCTGTTAAAATAACGGAGACCACTGTTGTGTCAAAGGAAAGTAATACAAGTCCTGTTTATACCAAATCAGACGTTCGTGGTCAAATTTCGTCTCATGAA                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD091430             [                                                                                                                                                                                                                         AAAGCACGGAGATGAGAGCTGTACGTCAGAAATGTCACACAACGGGGGATCTTCACTTTCTACGCTAAATAAACCATCAATACGTCATATCCGGGTCCATAAAAGTAAACCTGTTAAAATAACGGAGACCACTGTTGTGTCAAAGGAAAGTAATACAAGTCCTGTTTATACCAAATCAGACGTTCGTGGTCAAATTTCGTCTCATGAAAACCAAACAACCAAGTTACAGTCTGTAGTCAATTGTGCTAGGGCTTCAGGTAAGAATATATATCACTCAAAATATTCTTTAGATCCACAAATGTCGGAGCAGGTTGAAACATTTCATACCTCAATGTTTGCTAAATCAACTAAACATCTTCAGGGTCTACGGGACTTAGAAAAGGTGCAGCTTCAGATGCAACTAGAGGTTGTAACTAATCAAGTAAACTAATATCATTTCGAATGTTTCGTGTAATGATTTACATCTAGGCTTTACATACGATAGTCTTATCTGTTTAATTTATCGCATTGCACTTATAGTGTCTTCACCCCCTGA]




>consensus_7567#0
CGTTCTAATATTGATGGAAAACGTGGAGTTACGAATTACTGATAAAAGTAAATACCGGCC
AGCTAATTAACTGCCAAATAGAATATGTACTGGATGCTCATTTAAAGCCCGATGAGGCAG
AGGAAGGAGAGGTCAACGATTTGTCTGACCGAGAAGATAATGTCTCAGACTTTTCGAGTA
AAAGCGGTTCATCAAAGTCTTATAACAACTCGTCACCAAAGCACGGAGATGAGAGCTGTA
CGTCAGAAATGTCACACAACGGGGGATCTTCACTTTCTACGCTAAATAAACCATCAATAC
GTCATATCCGGGTCCATAAAAGTAAACCTGTTAAAATAACGGAGACCACTGTTGTGTCAA
AGGAAAGTAATACAAGTCCTGTTTATACCAAATCAGACGTTCGTGGTCAAATTTCGTCTC
ATGAAAACCAAACAACCAAGTTACAGTCTGTAGTCAATTGTGCTAGGGCTTCAGGTAAGA
ATATATATCACTCAAAATATTCTTTAGATCCACAAATGTCGGAGCAGGTTGAAACATTTC
ATACCTCAATGTTTGCTAAATCAACTAAACATCTTCAGGGTCTACGGGACTTAGAAAAGG
TGCAGCTTCAGATGCAACTAGAGGTTGTAACTAATCAAGTAAACTAATATCATTTCGAAT
GTTTCGTGTAATGATTTACATCTAGGCTTTACATACGATAGTCTTATCTGTTTAATTTAT
CGCATTGCACTTATAGTGTCTTCACCCCCTGA

consensusID : consensus_7567#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 673
fasta sequence

                              [CTTTCTAATATTGATGGAAAACGTGGAGTTACGAATTACTGATAAAAAATATGTACTGGATGCTCATTTAAAGCCCGATGAGGCAGAGGAAGGAGAGGTCAACGATTTGTCTGACCAAGAAGATAATGTCTCAGACTTTTCGAGTAATAGCGGTTCATCAAAGTCTTATAACAACTCGTCACCAAAGCACGGAGATGAGAGCTGTACGTCAGAAATGTCACACAACGGGGGATCTTCACTTTCTACGCTAAATAAACCATCAATACGTCATATCCGGGTCCATAAAAGTAAACCTGTTAAAATAACGGAGACCACTGTTGTGTCAAAGGAAAATAATACAAGTCCTGTTTATACCAAATCAGACGTTCGTGGTCAAATTTCGTCTCATGAAAACCAAACAACCAAGTTACAGTCTGTAGTCAATTGTGCTAGGGCTTCAGATCCACAAATGTCGGAGCAGGTTGAAACATTTCATACCTCAATGTATGCTAAATCAACTAAACATCTTCAGGGTCTACGGGACTTAG-AAAGGTGCAGCTTCAGATGCAACTAGAGGTTGTAACTAATCAAAATGAACATAGTCATACTCCTACTCCCTATCCCAGTTTCTCTCAAAGTGTACATGCAGAGTGTGTTTGCCTGGTTTNTGTTACCTGGTGGACGAGAACGGTAC]

[+] EMBL CD148676             [CTTTCTAATATTGATGGAAAACGTGGAGTTACGAATTACTGATAAAAAATATGTACTGGATGCTCATTTAAAGCCCGATGAGGCAGAGGAAGGAGAGGTCAACGATTTGTCTGACCAAGAAGATAATGTCTCAGACTTTTCGAGTAATAGCGGTTCATCAAAGTCTTATAACAACTCGTCACCAAAGCACGGAGATGAGAGCTGTACGTCAGAAATGTCACACAACGGGGGATCTTCACTTTCTACGCTAGATAAACCATCAATACGTCATATCCGGGTCCATAAAAGTAAACCTGTTAAAATAACGGAGACCACTGTTGTGTCAAAGGAAAGTAATACAAGTCCTGTTTATACCAAATCAGACGTTCGTGGTCAAATTTCGTCTCATGAAAACCAAACAACCAAGTTACAGTCTGTAGTCAATTGTGCTAGGGCTTCAGATCCACAAATGTCGGAGCAGGTTGAAACATTTCATACCTCAATGTTTGCTAAATCAACTAAACATCTTCAGGGTCTACGGGACTTAG AAAGGTGCAGCTTCAGATGCAACTAGAGGTTGTAACT                                                                                                             ]
[-] EMBL CD124261             [ TTTCTAATACTGATGGANAACGTGGAGTTACGAATTACTGATACAAGATATGTACTGGATGCTCATTTAGAGCCCGATGAGGCAGAGGAAGGAGAGGTCAACGATTTGTCTGACCAAGAAGATAATGTCTCAGACTNTTCGAGTAATAGCGGTTCATCANAGTCTTATAACAACTCGTCACCAAAGCACGGAGATGGGAGCTGTACGTCAGAAATGTCACACAACGGGGGATCTTCACTTTCTACGCTAAATAAACCATCAATACGTCATATCCGGGTCCATAAAAGTAAACCTGTTAAAATAACGGAGACCACTGTTGCGTCAAAGGAAAATAATACAAGTCCTGTTTATACCAAATCAGACGTTCGTGGTCAAATTTCGTCTCATGAAAACCAAACAACCAAGTTACAGTCTGTAGTCAATTGTGCTAGGGCTTCAGATCCACAAATGTCGGAGCAGGTTGAAACATTTCATACCTCAATGTATGtggaccagc                                                                                                                                                                                 ]
[-] EMBL CD124327             [                               CGAATTACTGATAAANAATATGTACTGGATGCTCATTTAAAGCCCGATGAGGCAGAGGAAGGAGAGGTCAACGATTTGTCTGACCAAGAAGATAATGTCTCAGACTTTTCGAGTAATAGCGGTTCATCAAAGTCTTATAACAACTCGTCACCAAAGCACGGAGATGAGAGCTGTACGTCAGAAATGTCACACAACGGGGGATCTTCACTTTCTACGCTAAATAATCCATCAATACGTCATATCCGGGTCCATAAAAGTAAACCTGTTAAAATAACGGAGACCACTGTTGTGTCAAAGGAAAATAATACAAGTCCTGTTTATACCAAATCAGACGTTCGTGGTCAAATTTCGTCTCATGAAAACCAAACAACCAAGTTACAGTCTGTAGTCAATTGTGCTAGGGCTTCAGATCCACAAATGTCGGAGCAGGTTGGAACATTTCATACCTCAATGTCTGCTAAATCAACTAAACATCTTCAGGGTCTACGGGACTTAGAAAAGGTGCAGCTTCAGATGCAACTAGAGGTTGTAACTAATCAAAATGAACATAGTCATACTCCTACTCCCTATCCCAGTTTCTCTCAAAGTGTACATGCAGAGTGTGTTTGCCTGGTTTNTGTTACCTGGTGGACGAGAACGGTAC]




>consensus_7567#1
CTTTCTAATATTGATGGAAAACGTGGAGTTACGAATTACTGATAAAAAATATGTACTGGA
TGCTCATTTAAAGCCCGATGAGGCAGAGGAAGGAGAGGTCAACGATTTGTCTGACCAAGA
AGATAATGTCTCAGACTTTTCGAGTAATAGCGGTTCATCAAAGTCTTATAACAACTCGTC
ACCAAAGCACGGAGATGAGAGCTGTACGTCAGAAATGTCACACAACGGGGGATCTTCACT
TTCTACGCTAAATAAACCATCAATACGTCATATCCGGGTCCATAAAAGTAAACCTGTTAA
AATAACGGAGACCACTGTTGTGTCAAAGGAAAATAATACAAGTCCTGTTTATACCAAATC
AGACGTTCGTGGTCAAATTTCGTCTCATGAAAACCAAACAACCAAGTTACAGTCTGTAGT
CAATTGTGCTAGGGCTTCAGATCCACAAATGTCGGAGCAGGTTGAAACATTTCATACCTC
AATGTATGCTAAATCAACTAAACATCTTCAGGGTCTACGGGACTTAGAAAGGTGCAGCTT
CAGATGCAACTAGAGGTTGTAACTAATCAAAATGAACATAGTCATACTCCTACTCCCTAT
CCCAGTTTCTCTCAAAGTGTACATGCAGAGTGTGTTTGCCTGGTTTNTGTTACCTGGTGG
ACGAGAACGGTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7567#0      CGTTCTAATATTGATGGAAAACGTGGAGTTACGAATTACTGATAAAAGTAAATACCGGCC 60
consensus_7567#1      CTTTCTAATATTGATGGAAAACGTGGAGTTACGAATTACTGATAAAA------------- 47
                      * *********************************************             

consensus_7567#0      AGCTAATTAACTGCCAAATAGAATATGTACTGGATGCTCATTTAAAGCCCGATGAGGCAG 120
consensus_7567#1      ---------------------AATATGTACTGGATGCTCATTTAAAGCCCGATGAGGCAG 86
                                           ***************************************

consensus_7567#0      AGGAAGGAGAGGTCAACGATTTGTCTGACCGAGAAGATAATGTCTCAGACTTTTCGAGTA 180
consensus_7567#1      AGGAAGGAGAGGTCAACGATTTGTCTGACCAAGAAGATAATGTCTCAGACTTTTCGAGTA 146
                      ****************************** *****************************

consensus_7567#0      AAAGCGGTTCATCAAAGTCTTATAACAACTCGTCACCAAAGCACGGAGATGAGAGCTGTA 240
consensus_7567#1      ATAGCGGTTCATCAAAGTCTTATAACAACTCGTCACCAAAGCACGGAGATGAGAGCTGTA 206
                      * **********************************************************

consensus_7567#0      CGTCAGAAATGTCACACAACGGGGGATCTTCACTTTCTACGCTAAATAAACCATCAATAC 300
consensus_7567#1      CGTCAGAAATGTCACACAACGGGGGATCTTCACTTTCTACGCTAAATAAACCATCAATAC 266
                      ************************************************************

consensus_7567#0      GTCATATCCGGGTCCATAAAAGTAAACCTGTTAAAATAACGGAGACCACTGTTGTGTCAA 360
consensus_7567#1      GTCATATCCGGGTCCATAAAAGTAAACCTGTTAAAATAACGGAGACCACTGTTGTGTCAA 326
                      ************************************************************

consensus_7567#0      AGGAAAGTAATACAAGTCCTGTTTATACCAAATCAGACGTTCGTGGTCAAATTTCGTCTC 420
consensus_7567#1      AGGAAAATAATACAAGTCCTGTTTATACCAAATCAGACGTTCGTGGTCAAATTTCGTCTC 386
                      ****** *****************************************************

consensus_7567#0      ATGAAAACCAAACAACCAAGTTACAGTCTGTAGTCAATTGTGCTAGGGCTTCAGGTAAGA 480
consensus_7567#1      ATGAAAACCAAACAACCAAGTTACAGTCTGTAGTCAATTGTGCTAGGGCTTCAG------ 440
                      ******************************************************      

consensus_7567#0      ATATATATCACTCAAAATATTCTTTAGATCCACAAATGTCGGAGCAGGTTGAAACATTTC 540
consensus_7567#1      ---------------------------ATCCACAAATGTCGGAGCAGGTTGAAACATTTC 473
                                                 *********************************

consensus_7567#0      ATACCTCAATGTTTGCTAAATCAACTAAACATCTTCAGGGTCTACGGGACTTAGAAAAGG 600
consensus_7567#1      ATACCTCAATGTATGCTAAATCAACTAAACATCTTCAGGGTCTACGGGACTTAGAAA-GG 532
                      ************ ******************************************** **

consensus_7567#0      TGCAGCTTCAGATGCAACTAGAGGTTGTAACTAATCAAGTAAACTAATATCATTTCGAAT 660
consensus_7567#1      TGCAGCTTCAGATGCAACTAGAGGTTGTAACTAATCAAAATGAACATAGTCATACTCC-T 591
                      **************************************    *  *   ****      *

consensus_7567#0      GTTTCGTGTAATGATTTACATCTAGGCTTTACATACGATAGTCTTATCTGTTTAATTTAT 720
consensus_7567#1      ACTCCCTATCCCAGTTTCTCTCAAAG-TGTACATGC-AGAGTGT-GTTTGCCTGGTTTNT 648
                        * * * *     ***   ** * * * ***** * * *** *  * **  *  *** *

consensus_7567#0      CGCATTGCACTTATAGTGTCTTCACCCCCTGA 752
consensus_7567#1      GTTACCTGGTGGACGAGAACGGTAC------- 673
                         *        *      *   **