cluster # 7568

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7568 cluster # 7568 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7568#0 length = 999 sequences # 3

consensus_7568#1 length = 365 sequences # 2

consensusID : consensus_7568#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 999
fasta sequence

                              [TATTGAGCTATAAGGGCACCAAAACCTTTAAAAAGACCCAGGATTCCAACAGGCGACCCCAAGCTAGAGCGAAGTGCATCAAAAAATCCGTCATATGAAGAAACAATGGGAACAACTACATCACCCGTATCCATATTATCAACCAGAGTACGAGTGCCTTGTACACACAACCGTAGTACTAGGGTTTCTACTGGATAAAGTACAACATCTGCGACAAAATTAGCTGTCATCCCAGCGAACAAATCGGCATAATAACGATCATAAATCGCCTGTAAAGCGGTGTCCTGACGTTGGTAAATTANAGTATCCATATCTGTTGTATGACGCTCACTAACAGATGTATGTGCGTTTGGTATTGCATAATGAATAGCAAATCCAGAACACCTATTCCGATTATAGCCTTCAGTGTTATAATTAAAAACCATTTCCGCATCTCGTTCAAGACGATCCTCATTACCACTCCAGTAATACAAAGCTACAGTGCTTGCAAACGATCGAACAACATAATGACCGACATTAAGTAAAACAACAGGAGGAAAGAGACGCCAAACAGGCAGCAAACGTGACGTCGCGATCGGAATGCTCCTGATAGTATGACCACTGCGAAACATTGAACCTGGTGAGCCTAATCTTGGGGATGACGGCATGTGAAATAAGCGGTAAAAACCATGGAGTACACAAGAAAGAAGGGTGAAAGGGGTTAAATGAAGACATTGACTTGATTCCAAAACTTGACACTGGTTCCTTATTACAATGAAAGGATGTGATAATAAAACCTCTAAGAACATGCTGGCAACCCCAATACCTATTCCAGCTAAGGCTGGACTTAAGTCATTATCGGCAACACCTGGCTTTACATCCACAGATTCCTGACAATTTTCCACTGGTCCCTCATTCAAAAATGCATTGGACACAGACCCATCTTGTACTAATTTATTTTCTAGATATTTTAGACGCTCAGAGTACATCCGTATGGGTAACGCAGTACTTGAAACGTTG]

[+] EMBL CD198248             [TATTGAGCTATAAGGGCACCAAAACCTTTAAAAAGACCCAGGATTCCAACAGGCGACCCCAAGCTAGAGCGAAGTGCATCAAAAAATCCGTCATATGAAGAAACAATGGGAACAACTACATCACCCGTATCCATATTATCAACCAGAGTACGAGTGCCTTGTACACACAACCGTAGTACTAGGGTTTCTACTGGATAAAGTACAACATCTGCGACAAAATTAGCTGTCATCCCAGCGAACAAATCGGCATAATAACGATCATAAATCGCCTGTAAAGCGGTGTCCTGACGTTGGTAAATTANAGTATCCATATCTGTTGTATGACGCTCACTAACAGATGTATGTGCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL AI977418             [                                                                                                                                                                                                                                                                                                                   CCATATCTGTTGTATGACGCTCACTAACAGATGTATGTGCGTTTGGTATTGCATAATGAATAGCAAATCCAGAACACCTATTCCGATTATAGCCTTCAGTGTTATAATTAAAAACCATTTCCGCATCTCGTTCAAGACGATCCTCATTACCACTCCAGTAATACAAAGCTACAGTGCTTGCAAACGATCGAACAACATAATGACCGACATTAAGTAAAACAACAGGAGGAAAGAGACGCCAAACAGGCAGCAAACGTGACGTCGCGATCGGAATGCTCCTGATAGTATGACCACTGCGAAACATTGAACCTGGTGAGCCTAATCTTGGGGATGACGGCATGTGAAATAAGCGGTAAAAACCATGGAGTACACAAGAAAGAA                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD188926             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CACTGCGAAACATTGAACCTGGTGAGCCTAATCTTGGGGATGACGGCATGTGAAATAAGCGGTAAAAACCATCGAGTACACAAGAAAGAAGGGTGAAAGGGGTTAAATGAAGACATTGACTTGATTCCAAAACTTGACACTGGTTCCTTATTACAATGAAAGGATGTGATAATAAAACCTCTAAGAACATGCTGGCAACCCCAATACCTATTCCAGCTAAGGCTGGACTTAAGTCATTATCGGCAACACCTGGCTTTACATCCACAGATTCCTGACAATTTTCCACTGGTCCCTCATTCAAAAATGCATTGGACACAGACCCATCTTGTACTAATTTATTTTCTAGATATTTTAGACGCTCAGAGTACATCCGTATGGGTAACGCAGTACTTGAAACGTTG]




>consensus_7568#0
TATTGAGCTATAAGGGCACCAAAACCTTTAAAAAGACCCAGGATTCCAACAGGCGACCCC
AAGCTAGAGCGAAGTGCATCAAAAAATCCGTCATATGAAGAAACAATGGGAACAACTACA
TCACCCGTATCCATATTATCAACCAGAGTACGAGTGCCTTGTACACACAACCGTAGTACT
AGGGTTTCTACTGGATAAAGTACAACATCTGCGACAAAATTAGCTGTCATCCCAGCGAAC
AAATCGGCATAATAACGATCATAAATCGCCTGTAAAGCGGTGTCCTGACGTTGGTAAATT
ANAGTATCCATATCTGTTGTATGACGCTCACTAACAGATGTATGTGCGTTTGGTATTGCA
TAATGAATAGCAAATCCAGAACACCTATTCCGATTATAGCCTTCAGTGTTATAATTAAAA
ACCATTTCCGCATCTCGTTCAAGACGATCCTCATTACCACTCCAGTAATACAAAGCTACA
GTGCTTGCAAACGATCGAACAACATAATGACCGACATTAAGTAAAACAACAGGAGGAAAG
AGACGCCAAACAGGCAGCAAACGTGACGTCGCGATCGGAATGCTCCTGATAGTATGACCA
CTGCGAAACATTGAACCTGGTGAGCCTAATCTTGGGGATGACGGCATGTGAAATAAGCGG
TAAAAACCATGGAGTACACAAGAAAGAAGGGTGAAAGGGGTTAAATGAAGACATTGACTT
GATTCCAAAACTTGACACTGGTTCCTTATTACAATGAAAGGATGTGATAATAAAACCTCT
AAGAACATGCTGGCAACCCCAATACCTATTCCAGCTAAGGCTGGACTTAAGTCATTATCG
GCAACACCTGGCTTTACATCCACAGATTCCTGACAATTTTCCACTGGTCCCTCATTCAAA
AATGCATTGGACACAGACCCATCTTGTACTAATTTATTTTCTAGATATTTTAGACGCTCA
GAGTACATCCGTATGGGTAACGCAGTACTTGAAACGTTG

consensusID : consensus_7568#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 365
fasta sequence

                              [CTTCCGAACAACAGGTATGAGGGTGAAAGGGGTTAAATGAAGACATTGACTTGATTCCAAAACTTGACTCTGGTTCCTTATTACAATGAAAGGATGTGATAATAAAACCTCTAAGAACATGCTAAAATATGTTAAGTAAACTCGCTTAAAGAAACCTGGCAACCCCAATACCTATTCCAGCTAAGGCTGGA-------CATTATCGGCAACACCTGGCTTTACATCCACAGATTCCTGACAATTTTCCACTGGTCCCTCATTCAAAAATGCATTGGACACAGACCCATCTTGTACTAATTTATTTTCTAGATATTTTAGACGCTCAGAGTACATCCGTATGGGTAACGCAGTACTTGAAACGTTGGCCTTGT]

[-] EMBL CD185840             [CTTCCGAACAACAGGTATGAGGGTGAAAGGGGTTAAATGAAGACATTGACTTGATTCCAAAACTTGACTCTGGTTCCTTATTACAATGAAAGGATGTGATAATAAAACCTCTAAGAACATGCTAAAATATGTTAAGTAAACTCGCTTAAAGAAACCTGGCAACCCCAATACCTATTCCAGCTAAGGCTGGA       CATTATCGGCAACACCTGGCTTTACATCCACAGATTCCTGACAATTTTCCACTGGTCCCTCATTCAAAAATGCATTGGACACAGACCCATCTTGTACTAATTTATTTTCTAGATATTTTAGACGCTCAGAGTACATCCGTATGGGTAACGCAGTACTTGAAACGTTGGCCTTG ]
[-] EMBL CD133494             [                                      GAAGACAATGACTTGATTACAAAACTTGACACTGGTTCCTTATTCCAATGAAAGGATGTGATAATAAAACCTCTAAGAACATGCTAAAATATGTTAAGTAAACTCGCTTAAAGTAACCTGGCAACCCCAATACCTATTCCAGCTAAGGCTGGACTTAAGTCATTATCGGCAACACCTGGCTTTACATCCACAGATTCCTGACAATTTTCCACTGGTCCCTCATTCAAAAATGCATTGGACACAGACCCATCTTGTACTAATTTATTTTCTAGATATTTTAGACGCTCAGAGTACATCCGTATGGGTAACGCAGTACTTGAAACGTTGGCCTTGT]




>consensus_7568#1
CTTCCGAACAACAGGTATGAGGGTGAAAGGGGTTAAATGAAGACATTGACTTGATTCCAA
AACTTGACTCTGGTTCCTTATTACAATGAAAGGATGTGATAATAAAACCTCTAAGAACAT
GCTAAAATATGTTAAGTAAACTCGCTTAAAGAAACCTGGCAACCCCAATACCTATTCCAG
CTAAGGCTGGACATTATCGGCAACACCTGGCTTTACATCCACAGATTCCTGACAATTTTC
CACTGGTCCCTCATTCAAAAATGCATTGGACACAGACCCATCTTGTACTAATTTATTTTC
TAGATATTTTAGACGCTCAGAGTACATCCGTATGGGTAACGCAGTACTTGAAACGTTGGC
CTTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7568#0      TATTGAGCTATAAGGGCACCAAAACCTTTAAAAAGACCCAGGATTCCAACAGGCGACCCC 60
consensus_7568#1      ------------------------------------------------------------
                                                                                  

consensus_7568#0      AAGCTAGAGCGAAGTGCATCAAAAAATCCGTCATATGAAGAAACAATGGGAACAACTACA 120
consensus_7568#1      ------------------------------------------------------------
                                                                                  

consensus_7568#0      TCACCCGTATCCATATTATCAACCAGAGTACGAGTGCCTTGTACACACAACCGTAGTACT 180
consensus_7568#1      ------------------------------------------------------------
                                                                                  

consensus_7568#0      AGGGTTTCTACTGGATAAAGTACAACATCTGCGACAAAATTAGCTGTCATCCCAGCGAAC 240
consensus_7568#1      ------------------------------------------------------------
                                                                                  

consensus_7568#0      AAATCGGCATAATAACGATCATAAATCGCCTGTAAAGCGGTGTCCTGACGTTGGTAAATT 300
consensus_7568#1      ------------------------------------------------------------
                                                                                  

consensus_7568#0      ANAGTATCCATATCTGTTGTATGACGCTCACTAACAGATGTATGTGCGTTTGGTATTGCA 360
consensus_7568#1      ------------------------------------------------------------
                                                                                  

consensus_7568#0      TAATGAATAGCAAATCCAGAACACCTATTCCGATTATAGCCTTCAGTGTTATAATTAAAA 420
consensus_7568#1      ------------------------------------------------------------
                                                                                  

consensus_7568#0      ACCATTTCCGCATCTCGTTCAAGACGATCCTCATTACCACTCCAGTAATACAAAGCTACA 480
consensus_7568#1      ------------------------------------------------------------
                                                                                  

consensus_7568#0      GTGCTTGCAAACGATCGAACAACATAATGACCGACATTAAGTAAAACAACAGGAGGAAAG 540
consensus_7568#1      ------------------------------------------------------------
                                                                                  

consensus_7568#0      AGACGCCAAACAGGCAGCAAACGTGACGTCGCGATCGGAATGCTCCTGATAGTATGACCA 600
consensus_7568#1      ------------------------------------------------------------
                                                                                  

consensus_7568#0      CTGCGAAACATTGAACCTGGTGAGCCTAATCTTGGGGATGACGGCATGTGAAATAAGCGG 660
consensus_7568#1      ------------------------------------------------------------
                                                                                  

consensus_7568#0      TAAAAACCATGGAGTACACAAGAAAGAAGGGTGAAAGGGGTTAAATGAAGACATTGACTT 720
consensus_7568#1      --------CTTCCGAACAACAGGTATGAGGGTGAAAGGGGTTAAATGAAGACATTGACTT 52
                               *   * ***  **  *  *********************************

consensus_7568#0      GATTCCAAAACTTGACACTGGTTCCTTATTACAATGAAAGGATGTGATAATAAAACCTCT 780
consensus_7568#1      GATTCCAAAACTTGACTCTGGTTCCTTATTACAATGAAAGGATGTGATAATAAAACCTCT 112
                      **************** *******************************************

consensus_7568#0      AAGAACATGCT----------------------------------GGCAACCCCAATACC 806
consensus_7568#1      AAGAACATGCTAAAATATGTTAAGTAAACTCGCTTAAAGAAACCTGGCAACCCCAATACC 172
                      ***********                                  ***************

consensus_7568#0      TATTCCAGCTAAGGCTGGACTTAAGTCATTATCGGCAACACCTGGCTTTACATCCACAGA 866
consensus_7568#1      TATTCCAGCTAAGGCTGGAC-------ATTATCGGCAACACCTGGCTTTACATCCACAGA 225
                      ********************       *********************************

consensus_7568#0      TTCCTGACAATTTTCCACTGGTCCCTCATTCAAAAATGCATTGGACACAGACCCATCTTG 926
consensus_7568#1      TTCCTGACAATTTTCCACTGGTCCCTCATTCAAAAATGCATTGGACACAGACCCATCTTG 285
                      ************************************************************

consensus_7568#0      TACTAATTTATTTTCTAGATATTTTAGACGCTCAGAGTACATCCGTATGGGTAACGCAGT 986
consensus_7568#1      TACTAATTTATTTTCTAGATATTTTAGACGCTCAGAGTACATCCGTATGGGTAACGCAGT 345
                      ************************************************************

consensus_7568#0      ACTTGAAACGTTG------- 999
consensus_7568#1      ACTTGAAACGTTGGCCTTGT 365
                      *************