cluster # 7580

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Schistosoma mansoni
cluster # 7580 cluster # 7580 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7580#0 length = 841 sequences # 4

consensus_7580#1 length = 594 sequences # 1

consensusID : consensus_7580#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 841
fasta sequence

                              [AGGATCAATTTCCAAATTANCAATTTANATCAGTTTCTCATTCAGTTAATCCAAATCATAATAATTCTGTCAACTTGATTTCTGTTTATGGTAGTACATACCAAACTTCGTCATCATGCAGTACCTCCAATTATCCAATACAATACGATCAAAATGTACCTTGTAAATTTATTGACAATATTATAACTACTGTATCTTCTGAATCTACTACCAGTATTCAGAAAGAGTCTGATGTAAATAATTCTGATGAATCTATTACTGATATACAACAAATCACCAACCTTAGTAGCGACAAGTCATTTCAGTTTTTCAACTCTAGTATGTGCGAAGTTGTTAAACAATCCTCTATGCCTCCCACAATCTCATATGGCATATCACAACCAGTCCCTCGCCAGCGTGCATTTCCTCGTACTAATCCGACTATATCACGTCCCTCCGGTAATGGGACTTGTACTCTACCTCGACCTTGTACTATCCCATCGGAAGGGTCACCGATCTCTTTGTTCCCTTCTGTCGCTCTTAGCCAGTTTAGTGATACCAGCTCTGCAAGAGCTTCAATAACCGACTCAAAAATTCCTATTATTCATGGATCAGACTCAAAAGACTCATCTTCCTTAATTAAACAAAAATTGATTGAGCATGTATCAAGTAATCTGATACCTGAAGATATTTCTAATTCAGATAACACACCTGAATGTATCATAACTTCTTCATCCCAAGTTTTAAATGCTTCTCTTAAAGTTTCTTGTTCAGTCAATGAAGTCATACCTTCATACTGTTCTAATAAATATAATATCAAAGTATCTTCTGGCAATTATCTTCCGGTTGATAGTCCTCTATC]

[-] EMBL CD194962             [AGGATCAATTTCCAAATTANCAATTTANATCAGTTTCTCATTCAGTTAATCCAAATCATAATAATTCTGTCAACTTGATTTCTGTTTATGGTAGTACATACCAAACTTCGTCATCATGCAGTACCTCCAATTATCCAATACAATACGATCAAAATGTACCTTGTAAATTTATTGACAATATTATAACTACTGTATCTTCTGAATCTACTACCAGTATTCAGAAAGAGTCTGATGTAAATAATTCTGATGAATCTATTACTGATATACAACAAATCACCAACCTTAGTAGCGACAAGTCATTTCAGTTTTTCAACTCTAGTATGTGCGAAGTTGTTAAACAATCCTCTATGCCTCCCACAATCTCATATGGCATATCACAACCAGTCCCTCGCCAGCGTGCATTTCCTCGTACTAATCCGACTATATCACGTCCCTCCGGTAATGGGACTTGTACTCTACCTCGACCTTGTACTATCCCATCGGAAGGGTCACCGATCTCTTTGTTCCCTTCTGTCGCTCTTAGCCAGTTTAGTGATACCAGCTCTGCAAGAGCTT                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD069791             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CTCTTTGTTCCCTTCTGTCGCTCTTAGCCAGTTTAGTGATACCAGCTCTGCAAGAGCTTCAATAACCGACTCAAAAATTCCTATTATTCATGGATCAGACTCAAAAGACTCATCTTCCTTAATTAAACAAAAATTGATTGAGCATGTATCAAGTAATCTGATACCTGAAGATATTTCTAATTCAGATAACACACCTGAATGTATCATAACTTCTTCATCCCAAGTTTTAAATGCTTCTCTTAAAGTTTCTTGTTCAGTCAATGAAGTCATACCTTCATACTGTTCTAATAAATATAATATCAAAGTATCTTCTGG                              ]
[+] EMBL CD069755             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CTCTTTGTTCCCTTCTGTCGCTCTTAGCCAGTTTAGTGATACCAGCTCTGCAAGAGCTTCAATAACCGACTCAAAAATTCCTATTATTCATGGATCAGACTCAAAAGACTCATCTTCCTTAATTAAACAAAAATTGATTGAGCATGTATCAAGTAATCTGATACCTGAAGATATTTCTAATTCAGATAACACACCTGAATGTATCATAACTTCTTCATCCCAAGTTTTAAATGCTTCTCTTAAAGTTTCTTGTTCAGTCAATGAAGTCATACCTTCATACTGTTCTAATAAATATAATATCAAAGTATCTTCTGG                              ]
[-] EMBL CD069777             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TCTTTGTTCCCTTCTGTCGCTCTTAGCCAGTTTAGTGATACCAGCTCTGCAAGAGCTTCAATAACCGACTCAAAAATTCCTATTATTCATGGATCAGACTCAAAAGACTCATCTTCCTTAATTAAACAAAAATTGATTGAGCATGTATCAAGTAATCTGATACCTGAAGATATTTCTAATTCAGATAACACACCTGAATGTATCATAACTTCTTCATCCCAAGTTTTAAATGCTTCTCTTAAAGTTTCTTGTTCAGTCAATGAAGTCATACCTTCATACTGTTCTAATAAATATAATATCAAAGTATCTTCTGGCAATTATCTTCCGGTTGATAGTCCTCTATC]




>consensus_7580#0
AGGATCAATTTCCAAATTANCAATTTANATCAGTTTCTCATTCAGTTAATCCAAATCATA
ATAATTCTGTCAACTTGATTTCTGTTTATGGTAGTACATACCAAACTTCGTCATCATGCA
GTACCTCCAATTATCCAATACAATACGATCAAAATGTACCTTGTAAATTTATTGACAATA
TTATAACTACTGTATCTTCTGAATCTACTACCAGTATTCAGAAAGAGTCTGATGTAAATA
ATTCTGATGAATCTATTACTGATATACAACAAATCACCAACCTTAGTAGCGACAAGTCAT
TTCAGTTTTTCAACTCTAGTATGTGCGAAGTTGTTAAACAATCCTCTATGCCTCCCACAA
TCTCATATGGCATATCACAACCAGTCCCTCGCCAGCGTGCATTTCCTCGTACTAATCCGA
CTATATCACGTCCCTCCGGTAATGGGACTTGTACTCTACCTCGACCTTGTACTATCCCAT
CGGAAGGGTCACCGATCTCTTTGTTCCCTTCTGTCGCTCTTAGCCAGTTTAGTGATACCA
GCTCTGCAAGAGCTTCAATAACCGACTCAAAAATTCCTATTATTCATGGATCAGACTCAA
AAGACTCATCTTCCTTAATTAAACAAAAATTGATTGAGCATGTATCAAGTAATCTGATAC
CTGAAGATATTTCTAATTCAGATAACACACCTGAATGTATCATAACTTCTTCATCCCAAG
TTTTAAATGCTTCTCTTAAAGTTTCTTGTTCAGTCAATGAAGTCATACCTTCATACTGTT
CTAATAAATATAATATCAAAGTATCTTCTGGCAATTATCTTCCGGTTGATAGTCCTCTAT
C

consensusID : consensus_7580#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 594
fasta sequence

                              [ACTGTCATTGCTACAACANCAGCTAATAATAATATTAATGAATTCATCATTGACAATAGTAACACTAAGAAACCTGGTTGTTTATCTGATCGTCCTATCCGAAGACATAATATTCAATCATCACAACTTCAAGGATTAATAGAATTCCCTGCTCCATCTGAGGATCAATTTCCAAATTTACAATTTAAATCAGTTTCTCATTCAGTTAATCCAAATCATAATAATTCTGTCAACTTGATTTCTGTTTATGGTAGTACATACCAAACTTCGTCATCATGCAGTACCTCCAATTATCCAATACAATACGATCAAAATGTACCTTGTAAATTTATTGACAATATTATAACTACTGTATCTTCTGAATCTACTACCAGTATTCAGGAAGAGTCTGATGTAAATAATTCTGATGAATCTATTACTGATATACAACAAATCACCAACCTTAGTAGCGACAAGTCATTTCAGTTATAACTGACATCCCTAACACATCGAATACAAATCATGTCAGCATTGATAATCAACGTGTTCGTGATTGGTTACGTGACGCTGTTGCTACTACAACTAATGAAATGAAATCCACTGTTATTAATAACA]

[-] EMBL CD153121             [ACTGTCATTGCTACAACANCAGCTAATAATAATATTAATGAATTCATCATTGACAATAGTAACACTAAGAAACCTGGTTGTTTATCTGATCGTCCTATCCGAAGACATAATATTCAATCATCACAACTTCAAGGATTAATAGAATTCCCTGCTCCATCTGAGGATCAATTTCCAAATTTACAATTTAAATCAGTTTCTCATTCAGTTAATCCAAATCATAATAATTCTGTCAACTTGATTTCTGTTTATGGTAGTACATACCAAACTTCGTCATCATGCAGTACCTCCAATTATCCAATACAATACGATCAAAATGTACCTTGTAAATTTATTGACAATATTATAACTACTGTATCTTCTGAATCTACTACCAGTATTCAGGAAGAGTCTGATGTAAATAATTCTGATGAATCTATTACTGATATACAACAAATCACCAACCTTAGTAGCGACAAGTCATTTCAGTTATAACTGACATCCCTAACACATCGAATACAAATCATGTCAGCATTGATAATCAACGTGTTCGTGATTGGTTACGTGACGCTGTTGCTACTACAACTAATGAAATGAAATCCACTGTTATTAATAACA]




>consensus_7580#1
ACTGTCATTGCTACAACANCAGCTAATAATAATATTAATGAATTCATCATTGACAATAGT
AACACTAAGAAACCTGGTTGTTTATCTGATCGTCCTATCCGAAGACATAATATTCAATCA
TCACAACTTCAAGGATTAATAGAATTCCCTGCTCCATCTGAGGATCAATTTCCAAATTTA
CAATTTAAATCAGTTTCTCATTCAGTTAATCCAAATCATAATAATTCTGTCAACTTGATT
TCTGTTTATGGTAGTACATACCAAACTTCGTCATCATGCAGTACCTCCAATTATCCAATA
CAATACGATCAAAATGTACCTTGTAAATTTATTGACAATATTATAACTACTGTATCTTCT
GAATCTACTACCAGTATTCAGGAAGAGTCTGATGTAAATAATTCTGATGAATCTATTACT
GATATACAACAAATCACCAACCTTAGTAGCGACAAGTCATTTCAGTTATAACTGACATCC
CTAACACATCGAATACAAATCATGTCAGCATTGATAATCAACGTGTTCGTGATTGGTTAC
GTGACGCTGTTGCTACTACAACTAATGAAATGAAATCCACTGTTATTAATAACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7580#0      ------------------------------------------------------------
consensus_7580#1      ACTGTCATTGCTACAACANCAGCTAATAATAATATTAATGAATTCATCATTGACAATAGT 60
                                                                                  

consensus_7580#0      ------------------------------------------------------------
consensus_7580#1      AACACTAAGAAACCTGGTTGTTTATCTGATCGTCCTATCCGAAGACATAATATTCAATCA 120
                                                                                  

consensus_7580#0      ----------------------------------------AGGATCAATTTCCAAATTAN 20
consensus_7580#1      TCACAACTTCAAGGATTAATAGAATTCCCTGCTCCATCTGAGGATCAATTTCCAAATTTA 180
                                                              ******************  

consensus_7580#0      CAATTTANATCAGTTTCTCATTCAGTTAATCCAAATCATAATAATTCTGTCAACTTGATT 80
consensus_7580#1      CAATTTAAATCAGTTTCTCATTCAGTTAATCCAAATCATAATAATTCTGTCAACTTGATT 240
                      ******* ****************************************************

consensus_7580#0      TCTGTTTATGGTAGTACATACCAAACTTCGTCATCATGCAGTACCTCCAATTATCCAATA 140
consensus_7580#1      TCTGTTTATGGTAGTACATACCAAACTTCGTCATCATGCAGTACCTCCAATTATCCAATA 300
                      ************************************************************

consensus_7580#0      CAATACGATCAAAATGTACCTTGTAAATTTATTGACAATATTATAACTACTGTATCTTCT 200
consensus_7580#1      CAATACGATCAAAATGTACCTTGTAAATTTATTGACAATATTATAACTACTGTATCTTCT 360
                      ************************************************************

consensus_7580#0      GAATCTACTACCAGTATTCAGAAAGAGTCTGATGTAAATAATTCTGATGAATCTATTACT 260
consensus_7580#1      GAATCTACTACCAGTATTCAGGAAGAGTCTGATGTAAATAATTCTGATGAATCTATTACT 420
                      ********************* **************************************

consensus_7580#0      GATATACAACAAATCACCAACCTTAGTAGCGACAAGTCATTTCAGTTTTTCAACTCTAGT 320
consensus_7580#1      GATATACAACAAATCACCAACCTTAGTAGCGACAAGTCATTTCAGTTAT--AACTGACAT 478
                      *********************************************** *  ****    *

consensus_7580#0      ATGTGCGAAGTTGTTAAACAATCCTCTATGCCTCCCACAATCTCATATGGCATATCACAA 380
consensus_7580#1      CCCTAACACATCGAATACAAATCATGTCAGCATTG-ATAATC----AACGTGT-TCGTGA 532
                         *   *  * *   *  **** * *  ** *   * ****    *  *  * **   *

consensus_7580#0      CCAGTCCCTCGCCAGCGTGCATTTCCTCGTACTAATCCGACTATATCACGTCCCTCCGGT 440
consensus_7580#1      TTGGTTACGTGACGCTGT-TGCTACTACA-ACTAATGAAATGAAATCCACTGTTATTAAT 590
                         **  *  * *   **    * *  *  ******   *  * ***   *        *

consensus_7580#0      AATGGGACTTGTACTCTACCTCGACCTTGTACTATCCCATCGGAAGGGTCACCGATCTCT 500
consensus_7580#1      AACA-------------------------------------------------------- 594
                      **                                                          

consensus_7580#0      TTGTTCCCTTCTGTCGCTCTTAGCCAGTTTAGTGATACCAGCTCTGCAAGAGCTTCAATA 560
consensus_7580#1      ------------------------------------------------------------
                                                                                  

consensus_7580#0      ACCGACTCAAAAATTCCTATTATTCATGGATCAGACTCAAAAGACTCATCTTCCTTAATT 620
consensus_7580#1      ------------------------------------------------------------
                                                                                  

consensus_7580#0      AAACAAAAATTGATTGAGCATGTATCAAGTAATCTGATACCTGAAGATATTTCTAATTCA 680
consensus_7580#1      ------------------------------------------------------------
                                                                                  

consensus_7580#0      GATAACACACCTGAATGTATCATAACTTCTTCATCCCAAGTTTTAAATGCTTCTCTTAAA 740
consensus_7580#1      ------------------------------------------------------------
                                                                                  

consensus_7580#0      GTTTCTTGTTCAGTCAATGAAGTCATACCTTCATACTGTTCTAATAAATATAATATCAAA 800
consensus_7580#1      ------------------------------------------------------------
                                                                                  

consensus_7580#0      GTATCTTCTGGCAATTATCTTCCGGTTGATAGTCCTCTATC 841
consensus_7580#1      -----------------------------------------