These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7587#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 907 fasta sequence [TGAATGTCTTACTTTATATTTAGAAAGCCGGGATGCATTTGCTGACTGGTATCAACAAGTACATACTAATCGACCAGTACAACCGTCTTCGTTAACAAATAATAATAATAATCTTATGCATACAACATATGGTCCTCGTGGTTTAGCACAACGTCTTGCTATTGAAGAATCAAAAAAAGAGTATTTAGCACGTCTTGAACGTTGGCGACATGATACACGTTTGGATACAGAGGCAGCAGCTGAAAAACTCTTAGCATTATTGACATATCCTCATCCTGGTTGGCTAGTTGATATAGAACAACAACAACAACAACAACAGCAGTAGCAGCTGAATATGGATCCAAATGATCGATTAACATCGACAACAAAAACTAATCATAATCACAGTATGAATTTTCATCATGATAAACTAATGGATCATGAAATAGAATATAATGAAGGTGAAACACATGAAAAACATTGTGGAACATTACTTGTAAATAAAGAAGATTTATTTGATGGACTTGGTGAAAATTCTACTTCACGTCAATTACAAATGAATGTACTACGAGAGACATGTATTACAGAGACAGTATTTCTTATTGTTCGTTTATATCAAACTGCTGGATTACATCAAAAATGTATTGAATTATCTAATTTAATTGTAGATAATGAATATGGTTTATTCAAGTTGTTCTCTGGACCTCAACTTCAAAATCTTCTTCATCATATCTCTGAATCCATTCAATATCTAATTGACAATGAACAAGATCCATTAGGTTATACTGTACATTAGTCATATGAATATGAC-TTATGCGCTGCTGTATTTCTAATGTATCAATGAACCGAAGTCGTCTATTTCTTGTGTATACAAATGGATGGAGATGTTTTTGTATCCCTATTTATGTTTTTTTTTTGTTTGTATGTA] [+] EMBL AW017165 [TGAATGTCTTACTTTATATTTAGAAAGCCGGGATGCATTTGCTGACTGGTATCAACAAGTACATACTAATCGACCAGTACAACCGTCTTCGTTAACAAATAATAATAATAATCTTATGCATACAACATATGGTCCTCGTGGTTTAGCACAACGTCTTGCTATTGAAGAATCAAAAAAAGAGTATTTAGCACGTCTTGAACGTTGGCGACATGATACACGTTTGGATACAGAGGCAGCAGCTGAAAAACTCTTAGCATTATTGACATATCCTCATCCTGGTTGGCTAGTTGATATAGAACAACAACAACAACAACAACAGCAGTAGCAGCTGAATATGGATCCAAATGATCGATTAACATCGACAACAAAAACTAATCATAATCACAGTATGAATTTTCATCATGATAAACTAATGGATCATGAAATAGAATATAATGAAGGTGAAACACATGANAAACATTGTGGAACATTACTTGTAAATAAAGAAGATTTATTTGATGGACTTGGTGAAAATTCTACTTCACGTCAATTACAAATGAATGTACTACGAGAGACATGTATTACAGAGACA ] [-] EMBL CD119062 [ TCATAATCACAGTATG ATTTTCATCATGATAAACTAATGGATCATGAAATAGAATATAATGAAGGTGAAACACATGAAAAACATTGTGGAACATTACTTGTAAATAAAGAAGATTTATTTGATGGACTTGGTGAAAATTCTACTTCACGTCAATTACAAATGAATGTACTACGAGAGACATGTATTACAGAGACAGTATTTCTTATTGTTCGTTTATATCAAACTGCTGGATTACATCAAAAATGTATTGAATTATCTAATTTAATTGTAGATAATGAATATGGTTTATTCAAGTTGTTCTCTGGACCTCAACTTCAAAATCTTCTTCATCATATCTCTGAATCCATTCAATATCTAATTGACAATGAACAAGATCCATTAGGTTATACTGTACATTAGTCATATGAATATGAC TTATACGCTGCTGTATTTCTAATGTAT ] [-] EMBL CD137778 [ CACGAAATAGAATATAATGAAGGTGAAACACATGAAAAACATTGTGGAACATTACTTGTAAATAAAGAAGATTTATTTGATGGACTTGGTGAAAATTCTACTTCACGTCAATTACAAATGAATGTACTACGAGAGACATGTATTACAGAGACAGTATTTCTTATTGTTCGTTTATATCAAACTGCTGGATTACATCAAAAATGTATTGAATTATCTAATTTAATTGTAGATAATGAATATGGTTTATTCAAGTTGTTCTCTGGACCTCAACTTCAAAATCTTCTTCATCATATCTCTGAATCCATCCAATATCTAATTGACAATGAACAAGATCCATTAGGTTATACTGTACATTAGTCATATGAATATGGC TTATGCGCTGCTGTATTTCT ] [-] EMBL CD137084 [ TTCTTATTGTTCGTTTATATCGAACTGCTGGATTACATCAAAAATGTATTGAATTATCTAATTTAATTGTAGATAATGAATATGGTTTATTCAAGTTGTTCTCTGGACCTCAACTTCAAAATCTTCTTCATCATATCTTTGAATCCATTCAATATTTAATTGACAATGAACAAGATCCATTAGGTTATACTGTACATTAGTCATATGAATATGACTTTATGCGCTGCTGTATTTTTAATGTATCAATGAACCGAAGTCGTCTATTTCTTGTGTATACAAATGGATGGAGATGTTTTTGTATCCCTATTTATGTTTTTTTTTTGTTTGTATGTA] consensusID : consensus_7587#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 358 fasta sequence [CCCCTTCATAAAAGAAGATTTATTTGATGGACTTGGTGAAAATTCTACTTCACGTCAATTACAAATGAATGTACTACGAGAGACATGTATTACAGAGACAGTATTTCTTATTGTTCGTTTATATCAAACTGCTGGATTACATCAAAAATGTATTGAATTATCTAATTTAATTGTAGATAATGAATATGGTTTATTCAAGTTGTTCTCTGGACCTCAACTTCAAAATCTTCTTCATCATATCTCTGAATCCATTCAATATCTAATTGACAATGAACAAGATCCATTAGGTTATACTGCACATTAGTCATATGAATATGACTTATGCGCTGCTGTATTTCTAATGTATCAATGAACCGAA] [+] EMBL CD137074 [CCCCTTCATAAAAGAAGATTTATTTGATGGACTTGGTGAAAATTCTACTTCACGTCAATTACAAATGAATGTACTACGAGAGACATGTATTACAGAGACAGTATTTCTTATTGTTCGTTTATATCAAACTGCTGGATTACATCAAAAATGTATTGAATTATCTAATTTAATTGTAGATAATGAATATGGTTTATTCAAGTTGTTCTCTGGACCTCAACTTCAAAATCTTCTTCATCATATCTCTGAATCCATTCAATATCTAATTGACAATGAACAAGATCCATTAGGTTATACTGCACATTAGTCATATGAATATGACTTATGCGCTGCTGTATTTCTAATGTATCAATGAACCGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7587#0 TGAATGTCTTACTTTATATTTAGAAAGCCGGGATGCATTTGCTGACTGGTATCAACAAGT 60 consensus_7587#1 ------------------------------------------------------------ consensus_7587#0 ACATACTAATCGACCAGTACAACCGTCTTCGTTAACAAATAATAATAATAATCTTATGCA 120 consensus_7587#1 ------------------------------------------------------------ consensus_7587#0 TACAACATATGGTCCTCGTGGTTTAGCACAACGTCTTGCTATTGAAGAATCAAAAAAAGA 180 consensus_7587#1 ------------------------------------------------------------ consensus_7587#0 GTATTTAGCACGTCTTGAACGTTGGCGACATGATACACGTTTGGATACAGAGGCAGCAGC 240 consensus_7587#1 ------------------------------------------------------------ consensus_7587#0 TGAAAAACTCTTAGCATTATTGACATATCCTCATCCTGGTTGGCTAGTTGATATAGAACA 300 consensus_7587#1 ------------------------------------------------------------ consensus_7587#0 ACAACAACAACAACAACAGCAGTAGCAGCTGAATATGGATCCAAATGATCGATTAACATC 360 consensus_7587#1 ------------------------------------------------------------ consensus_7587#0 GACAACAAAAACTAATCATAATCACAGTATGAATTTTCATCATGATAAACTAATGGATCA 420 consensus_7587#1 ------------------------------------------------------------ consensus_7587#0 TGAAATAGAATATAATGAAGGTGAAACACATGAAAAACATTGTGGAACATTACTTGTAAA 480 consensus_7587#1 ---------------------------------------------------CCCCTTCAT 9 * * * consensus_7587#0 TAAAGAAGATTTATTTGATGGACTTGGTGAAAATTCTACTTCACGTCAATTACAAATGAA 540 consensus_7587#1 AAAAGAAGATTTATTTGATGGACTTGGTGAAAATTCTACTTCACGTCAATTACAAATGAA 69 *********************************************************** consensus_7587#0 TGTACTACGAGAGACATGTATTACAGAGACAGTATTTCTTATTGTTCGTTTATATCAAAC 600 consensus_7587#1 TGTACTACGAGAGACATGTATTACAGAGACAGTATTTCTTATTGTTCGTTTATATCAAAC 129 ************************************************************ consensus_7587#0 TGCTGGATTACATCAAAAATGTATTGAATTATCTAATTTAATTGTAGATAATGAATATGG 660 consensus_7587#1 TGCTGGATTACATCAAAAATGTATTGAATTATCTAATTTAATTGTAGATAATGAATATGG 189 ************************************************************ consensus_7587#0 TTTATTCAAGTTGTTCTCTGGACCTCAACTTCAAAATCTTCTTCATCATATCTCTGAATC 720 consensus_7587#1 TTTATTCAAGTTGTTCTCTGGACCTCAACTTCAAAATCTTCTTCATCATATCTCTGAATC 249 ************************************************************ consensus_7587#0 CATTCAATATCTAATTGACAATGAACAAGATCCATTAGGTTATACTGTACATTAGTCATA 780 consensus_7587#1 CATTCAATATCTAATTGACAATGAACAAGATCCATTAGGTTATACTGCACATTAGTCATA 309 *********************************************** ************ consensus_7587#0 TGAATATGACTTATGCGCTGCTGTATTTCTAATGTATCAATGAACCGAAGTCGTCTATTT 840 consensus_7587#1 TGAATATGACTTATGCGCTGCTGTATTTCTAATGTATCAATGAACCGAA----------- 358 ************************************************* consensus_7587#0 CTTGTGTATACAAATGGATGGAGATGTTTTTGTATCCCTATTTATGTTTTTTTTTTGTTT 900 consensus_7587#1 ------------------------------------------------------------ consensus_7587#0 GTATGTA 907 consensus_7587#1 ------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||