cluster # 7590

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Schistosoma mansoni
cluster # 7590 cluster # 7590 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7590#0 length = 483 sequences # 2
consensus_7590#1 length = 366 sequences # 1

consensus_7590#2 length = 327 sequences # 1
consensus_7590#3 length = 289 sequences # 1

consensusID : consensus_7590#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 483
fasta sequence

                              [AGGTTGTTAAACAAGACATTAATGGGAAATGGCTATCCACTTAAACACATAAATAGATAGAAAGTGCATAGTACAGTGAGACCTACTGTAGCCTTGGAGGAAAAGTGCCTGTCTACATCACCTTACCATTTTGAGGTGATTCAAATAACCCTTTATTGAAACAAAGACTTAAATTAGTCATCAACTAAACGTATTGTGCAGTAAAGGTCATTATCAAAGAAAGAACGGGGTTCATGCTTCATCCCAAACCTAAAAGACACGAAAACGATTGTCACATCCCACTGTACTTACCAATTTAATTAAATGTGTGTGCGGTCACACATACATAGGGAGAAGCAATCGCGATCTGAAAATTAGGATGTGAACATGTACCAAGACGGTTGCAAAACCAAACAGAATCAAATGACCCAATAAGCTTAGAGGATAAACATTCATCATCCTCTATTGGCAAACATATTATCGAAACAGGTCATAAGATTGATC]

[+] EMBL CD196420             [AGGTTGTTAAACAAGACATTAATGGGAAATGGCTATCCACTTAAACACATAAATAGATAGAAAGTGCATAGTACAGTGAGACCTACTGTAGCCTTGGAGGAAAAGTGCCTGTCTACATCACCTTACCATTTTGAGGTGATTCAAATAACCCTTTATTGAAACAAAGACTTAAATTAGTCATCAACTAAACGTATTGTGCAGTAAAGGTCATTATCAAAGAAAGAACGGGGTTCATGCTTCATCCCAAACCTAAAAGACACGAAAACGATTGTCACATCCCACTGTACTTACCAATTTAATTAAATGTGTGTGCGGTCACACATACATAGGGAGAAGCAATCGCGATCTGAAAATTAGGATGTGAACATGTACCAAGACGGTTGCAAAACCAAACAGAATCAAATGACCCAATAAGCTTAGAGGATAAACATTCATCATCCTCTATTGGCAAACATATTATCGAAACAGGTCATAAGATTGATC]
[-] EMBL CD196912             [                              GGCTATCCACTTAAACACATAAATAGATAGAAAGTGCATAGTACAGTGAGACCTACTGTAGCCTTGGAGGAAAAGTGCCTGTCTACATCACCTTACCATTTTGAGGTGATTCAAATAACCCTTTATTGAAACAAAGACTTAAATTAGTCATCAACTAAACGTATTGTGCAGTAAAGGTCATTATCAAAGAAAGAACGGGGTTCATGCTTCATCCCAAACCTAAAAGACACGAAAACGATTGTCACATCCCACTGTATTTACCAATTTAATTAAGTGTGTGTGCGGTCACACATACATAGGGAGAAGCAATCGCGATCTGAAAATTAGGATGTGAACATGTACCAAGACGGTTGCAAAACCAAACAGAATCAAATGACCCAATAAGCTTAGAGGATAAACATCCATCATCCTCTATTGCCAAACACATAATCGAAACAGGTCATAAGATTGATC]




>consensus_7590#0
AGGTTGTTAAACAAGACATTAATGGGAAATGGCTATCCACTTAAACACATAAATAGATAG
AAAGTGCATAGTACAGTGAGACCTACTGTAGCCTTGGAGGAAAAGTGCCTGTCTACATCA
CCTTACCATTTTGAGGTGATTCAAATAACCCTTTATTGAAACAAAGACTTAAATTAGTCA
TCAACTAAACGTATTGTGCAGTAAAGGTCATTATCAAAGAAAGAACGGGGTTCATGCTTC
ATCCCAAACCTAAAAGACACGAAAACGATTGTCACATCCCACTGTACTTACCAATTTAAT
TAAATGTGTGTGCGGTCACACATACATAGGGAGAAGCAATCGCGATCTGAAAATTAGGAT
GTGAACATGTACCAAGACGGTTGCAAAACCAAACAGAATCAAATGACCCAATAAGCTTAG
AGGATAAACATTCATCATCCTCTATTGGCAAACATATTATCGAAACAGGTCATAAGATTG
ATC

consensusID : consensus_7590#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 366
fasta sequence

                              [GGATGATATCTTAGTGATCGGCGAAAGAAAGGAAAATATAAACTGCCTATTGATTGTGTCACATCCCACTGCGTTTACCAATTTAAATGTGTGTGTGGTCACACATACATAGGGAGGAGCAATGGTGATCTGAAAATTAGTGTGGGTGAACATGTACCATAATGGTTGAAAAAACAAATAAAGTCGAATGACCCAAAAAGAGTAGAGGATAAACATCCATCATCCTCTATTGCCAAACATATAATCGAAACAGGTCATAAGATTGATTTTAACTCGGCTTTTGTTGTGTTGTTTAAAAGTGTAAAAGAGGGGCGTATACTTAGGTTTATTGAAGGGTTAGCCATACGAAAATTCAAACAATTGATT]

[-] EMBL CD091310             [GGATGATATCTTAGTGATCGGCGAAAGAAAGGAAAATATAAACTGCCTATTGATTGTGTCACATCCCACTGCGTTTACCAATTTAAATGTGTGTGTGGTCACACATACATAGGGAGGAGCAATGGTGATCTGAAAATTAGTGTGGGTGAACATGTACCATAATGGTTGAAAAAACAAATAAAGTCGAATGACCCAAAAAGAGTAGAGGATAAACATCCATCATCCTCTATTGCCAAACATATAATCGAAACAGGTCATAAGATTGATTTTAACTCGGCTTTTGTTGTGTTGTTTAAAAGTGTAAAAGAGGGGCGTATACTTAGGTTTATTGAAGGGTTAGCCATACGAAAATTCAAACAATTGATT]




>consensus_7590#1
GGATGATATCTTAGTGATCGGCGAAAGAAAGGAAAATATAAACTGCCTATTGATTGTGTC
ACATCCCACTGCGTTTACCAATTTAAATGTGTGTGTGGTCACACATACATAGGGAGGAGC
AATGGTGATCTGAAAATTAGTGTGGGTGAACATGTACCATAATGGTTGAAAAAACAAATA
AAGTCGAATGACCCAAAAAGAGTAGAGGATAAACATCCATCATCCTCTATTGCCAAACAT
ATAATCGAAACAGGTCATAAGATTGATTTTAACTCGGCTTTTGTTGTGTTGTTTAAAAGT
GTAAAAGAGGGGCGTATACTTAGGTTTATTGAAGGGTTAGCCATACGAAAATTCAAACAA
TTGATT

consensusID : consensus_7590#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 327
fasta sequence

                              [AAGAAAGAATGAGGTCCATGCTTCACTCAAAACCTAAAAGACATGAAAACAATTGTGTCACATCCCACTGCGGATAAATATCCATCATTCTCTATTGCCAAACACATAATCGAAACAGGTCATAAGATTAATCTTAACTCGGCTTTCGTGGCGTTGTATAAAAGTGTAAAAGGGTGTATATTAAGGTTTACTGAAGCCTTAGTCATACGCAAATTCAACCCCCCTTTGTGTACTCGAAAACAGTTTGTTCTCACCTTAAACCTACCCTGGTAATTAGAGCTTATTATCCAGAGTGATGAGGTTTCAAATTATTTTCTATATTACCCT]

[+] EMBL CD194022             [AAGAAAGAATGAGGTCCATGCTTCACTCAAAACCTAAAAGACATGAAAACAATTGTGTCACATCCCACTGCGGATAAATATCCATCATTCTCTATTGCCAAACACATAATCGAAACAGGTCATAAGATTAATCTTAACTCGGCTTTCGTGGCGTTGTATAAAAGTGTAAAAGGGTGTATATTAAGGTTTACTGAAGCCTTAGTCATACGCAAATTCAACCCCCCTTTGTGTACTCGAAAACAGTTTGTTCTCACCTTAAACCTACCCTGGTAATTAGAGCTTATTATCCAGAGTGATGAGGTTTCAAATTATTTTCTATATTACCCT]




>consensus_7590#2
AAGAAAGAATGAGGTCCATGCTTCACTCAAAACCTAAAAGACATGAAAACAATTGTGTCA
CATCCCACTGCGGATAAATATCCATCATTCTCTATTGCCAAACACATAATCGAAACAGGT
CATAAGATTAATCTTAACTCGGCTTTCGTGGCGTTGTATAAAAGTGTAAAAGGGTGTATA
TTAAGGTTTACTGAAGCCTTAGTCATACGCAAATTCAACCCCCCTTTGTGTACTCGAAAA
CAGTTTGTTCTCACCTTAAACCTACCCTGGTAATTAGAGCTTATTATCCAGAGTGATGAG
GTTTCAAATTATTTTCTATATTACCCT

consensusID : consensus_7590#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 289
fasta sequence

                              [GGCTTAAATCAGTCATCAACAAAACGTATTGTGCAGAAAAGGTTATTATCAAAGAAAGAACGAGGTCAATGCTTCATTCAAAACCTAAAAGACATGAAAACGATTGTGTCACATCCCACTGCGTTTACCAATTTAAATGTGTGGGTGGTCACACATACACTAGGGAGGAGCAATCGTAATCTGAAAATTAGGGTGGGTGAACATGTACCAAAATGGTTGCAGAAACAAATAGAATCAAATGACCCGATAGGAGTAGAGGATAAACAATCATCCTCTACTGCCAAACACA]

[+] EMBL CD130969             [GGCTTAAATCAGTCATCAACAAAACGTATTGTGCAGAAAAGGTTATTATCAAAGAAAGAACGAGGTCAATGCTTCATTCAAAACCTAAAAGACATGAAAACGATTGTGTCACATCCCACTGCGTTTACCAATTTAAATGTGTGGGTGGTCACACATACACTAGGGAGGAGCAATCGTAATCTGAAAATTAGGGTGGGTGAACATGTACCAAAATGGTTGCAGAAACAAATAGAATCAAATGACCCGATAGGAGTAGAGGATAAACAATCATCCTCTACTGCCAAACACA]




>consensus_7590#3
GGCTTAAATCAGTCATCAACAAAACGTATTGTGCAGAAAAGGTTATTATCAAAGAAAGAA
CGAGGTCAATGCTTCATTCAAAACCTAAAAGACATGAAAACGATTGTGTCACATCCCACT
GCGTTTACCAATTTAAATGTGTGGGTGGTCACACATACACTAGGGAGGAGCAATCGTAAT
CTGAAAATTAGGGTGGGTGAACATGTACCAAAATGGTTGCAGAAACAAATAGAATCAAAT
GACCCGATAGGAGTAGAGGATAAACAATCATCCTCTACTGCCAAACACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7590#0      AGGTTGTTAAACAAGACATTAATGGGAAATGGCTATCCACTTAAACACATAAATAGATAG 60
consensus_7590#3      ------------------------------------------------------------
consensus_7590#1      ------------------------------------------------------------
consensus_7590#2      ------------------------------------------------------------
                                                                                  

consensus_7590#0      AAAGTGCATAGTACAGTGAGACCTACTGTAGCCTTGGAGGAAAAGTGCCTGTCTACATCA 120
consensus_7590#3      ------------------------------------------------------------
consensus_7590#1      ------------------------------------------------------------
consensus_7590#2      ------------------------------------------------------------
                                                                                  

consensus_7590#0      CCTTACCATTTTGAGGTGATTCAAATAACCCTTTATTGAAACAAAGACTTAAATTAGTCA 180
consensus_7590#3      ---------------------------------------------GGCTTAAATCAGTCA 15
consensus_7590#1      ------------------------------------------------------------
consensus_7590#2      ------------------------------------------------------------
                                                                                  

consensus_7590#0      TCAACTAAACGTATTGTGCAGTAAAGGTCATTATCAAAGAAAGAACGGGGTTCATGCTTC 240
consensus_7590#3      TCAACAAAACGTATTGTGCAGAAAAGGTTATTATCAAAGAAAGAACGAGGTCAATGCTTC 75
consensus_7590#1      ------------------------GGATGATATCTTAGTGATCGGCGAAAGAAAGG---- 32
consensus_7590#2      ------------------------------------AAGAAAGAATGAGGTCCATGCTTC 24
                                                          *   *     *      * *    

consensus_7590#0      ATCCCAAACCTAAAAGACACGAAAACGATTGT--CACATCCCACTGTACTTACCAATTTA 298
consensus_7590#3      ATTCAAAACCTAAAAGACATGAAAACGATTGTGTCACATCCCACTGCGTTTACCAATTT- 134
consensus_7590#1      ----AAAATATAAACTGCCT---ATTGATTGTGTCACATCCCACTGCGTTTACCAATTT- 84
consensus_7590#2      ACTCAAAACCTAAAAGACATGAAAACAATTGTGTCACATCCCACTGCGGATAAATATCC- 83
                           ***  ****   *     *   *****  ************    **   **   

consensus_7590#0      ATTAAATGTGTGTGCGGTCACACATACA-TAGGGAGAAGCAATCG---CGATCTGAAAAT 354
consensus_7590#3      ---AAATGTGTGGGTGGTCACACATACACTAGGGAGGAGCAATCG---TAATCTGAAAAT 188
consensus_7590#1      ---AAATGTGTGTGTGGTCACACATACA-TAGGGAGGAGCAATGG---TGATCTGAAAAT 137
consensus_7590#2      ---ATCATTCTCTATTGCCAAACACATAATCGAAACAGGTCATAAGATTAATCTTAAC-T 139
                         *    * *     * ** *** * * * *  *   *  **       **** **  *

consensus_7590#0      TAGGATG--TGAACATGTACCAAGACGGTTGCAAAACCAAAC-AGAATCAAATGACCCAA 411
consensus_7590#3      TAGGGTGGGTGAACATGTACCAAAATGGTTGCAGAAACAAAT-AGAATCAAATGACCCGA 247
consensus_7590#1      TAGTGTGGGTGAACATGTACCATAATGGTTGAAAAAACAAAT-AAAGTCGAATGACCCAA 196
consensus_7590#2      CGGCTTTCGTGGCGTTGTATAAAAGTGTAAAAGGGTGTATATTAAGGTTTACTGAAGCCT 199
                        *  *   **    ****  *    *           * *  *   *  * ***  *  

consensus_7590#0      TAAGCTTAGAGGATAAACATTCATCATCCTCTATTGGCAAACATATTATCGAAACAGGTC 471
consensus_7590#3      TAGGAGTAGAGGATAAACA---ATCATCCTCTACTGCCAAACACA--------------- 289
consensus_7590#1      AAAGAGTAGAGGATAAACATCCATCATCCTCTATTGCCAAACATATAATCGAAACAGGTC 256
consensus_7590#2      TAGTCATACGCAAATTCAACCCCCCTTTGTGTACTCGAAAACAGTTTGTTCTCAC---CT 256
                       *    **    *     *     * *  * ** *   *****                 

consensus_7590#0      ATAAGATTGATC------------------------------------------------ 483
consensus_7590#3      ------------------------------------------------------------
consensus_7590#1      ATAAGATTGATTTTAACTCGGCTTTTGTTGTGTTGTTTAAAAGTGTAAAAGAGGGGCGTA 316
consensus_7590#2      TAAACCTACCCTGGTAATTAGAGCTTATTATCCAGAGTGATGAGGTTTCAAATTATTTTC 316
                                                                                  

consensus_7590#0      --------------------------------------------------
consensus_7590#3      --------------------------------------------------
consensus_7590#1      TACTTAGGTTTATTGAAGGGTTAGCCATACGAAAATTCAAACAATTGATT 366
consensus_7590#2      TATATTACCCT--------------------------------------- 327