cluster # 7596

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Schistosoma mansoni
cluster # 7596 cluster # 7596 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7596#0 length = 554 sequences # 3

consensus_7596#1 length = 394 sequences # 1
consensus_7596#2 length = 311 sequences # 1

consensusID : consensus_7596#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 554
fasta sequence

                              [TTACCCTACTAATGAGTACATCAGTGAAGTACAATCTGGCCGTTGCTATGGTAATTCTGTTTAGTACGAGAGGAACCGCAGGTTCAGATAATTGGTATATGTGCCTGGTCGAAAGGCCAATGGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAACGCGTCCACTAAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTAATGAGTACATCAGTGAAGTACAATCTGGCCGTTGCTATGGTAATCCTGTTTAGTACGAGAGGAACCGCAGGTTCAGATAATTGGTATATGTGCCTGGTCGAAAGGCCAATGGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCCCGTCCAAATTTGCAACGGTACATTCTGTATCCGACACGTGGCTGGGCAAGCTTACGTATTCCTTTTGGTGTCTGGACTGGACCATGTGTTCGGCTAGGCCCATTAGGTCTGGTGTTATGCCAGAGCGATGACCATANNAACCGTGCCTTTCCCCCCCCCGGG]

[+] EMBL CD092730             [TTACCCTACTAATGAGTACATCAGTGAAGTACAATCTGGCCGTTGCTATGGTAATTCTGTTTAGTACGAGAGGAACCGCAGGTTCAGATAATTGGTATATGTGCCTGGTCGAAAGGCCAATGGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAACGCGTCCACTAAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTAATGAGTACATCAGTGAAGTACAATCTGGCCGTTGCTATGGTAATCCTGTTTAGTACGAGAGGAACCGCAGGTTCAGATAATTGGTATATGTGCCTGGTCGAAAGGCCAATGGTGCGAAGCTACCATCTGAGGGATTAAGACTGA                                                                                                                                                                                      ]
[+] EMBL CD092748             [TTACCCTACTAATGAGTACATCAGTGAAGTACAATCTGGCCGTTGCTATAGTAATCCTGTTTAGTACGAGAGGAACCGCAGGTTCAGATAATTGGTATATGTGCCTGGTCGAAAGGCCAATGGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAACGCGTCCACTAAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTAATGAGTACATCAGTGAAGTACAATCTGGCCGTTGCTATGGTAATCCTGTTTAGTACGAGAGGAACCGCAGGTTCAGATAATTGGTATATGTGCCTGGTCGAAAGGCCAATGGTGCGAAGCTACCATCTGAGGGATTAAGACTGA                                                                                                                                                                                      ]
[+] EMBL CD184244             [                                                                                                                                                                                gaacgtgAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTAATGAGTACATCAGTGAAGTACAATCTGGCCGTTGCTATGGTAATCCTGTTTAGTACGAGAGGAACCGCAGGTTCAGATAATTGGTATATGTGCCTGGTCGAAAGGCCAATGGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCCCGTCCAAATTTGCAACGGTACATTCTGTATCCGACACGTGGCTGGGCAAGCTTACGTATTCCTTTTGGTGTCTGGACTGGACCATGTGTTCGGCTAGGCCCATTAGGTCTGGTGTTATGCCAGAGCGATGACCATANNAACCGTGCCTTTCCCCCCCCCGGG]




>consensus_7596#0
TTACCCTACTAATGAGTACATCAGTGAAGTACAATCTGGCCGTTGCTATGGTAATTCTGT
TTAGTACGAGAGGAACCGCAGGTTCAGATAATTGGTATATGTGCCTGGTCGAAAGGCCAA
TGGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAACGCGTCCA
CTAAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTAATGAGTACATCA
GTGAAGTACAATCTGGCCGTTGCTATGGTAATCCTGTTTAGTACGAGAGGAACCGCAGGT
TCAGATAATTGGTATATGTGCCTGGTCGAAAGGCCAATGGTGCGAAGCTACCATCTGAGG
GATTAAGACTGAACGCCTCTAAGTCTGAATCCCGTCCAAATTTGCAACGGTACATTCTGT
ATCCGACACGTGGCTGGGCAAGCTTACGTATTCCTTTTGGTGTCTGGACTGGACCATGTG
TTCGGCTAGGCCCATTAGGTCTGGTGTTATGCCAGAGCGATGACCATANNAACCGTGCCT
TTCCCCCCCCCGGG

consensusID : consensus_7596#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 394
fasta sequence

                              [TTCAGATAATTGGTATATGTGCCTGGTCGAAAGGCCAATGGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCCCGTCCAAATTTGCAACGGTACAATCTGGCCGTTGCTATGGTAATCTTGTTTAGTACGAGAGGAACCGCAGGTTCAGATAATTGGTATATGTGCCTGGTCGAAAGGCCAATGGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCCCGTCCAAATTTGCAACGGTACCATCTGGCCGTTGCTATGGTAATCCTGTTTAGTACGAGAGGAACCGCAGGTTCAGATAATTGGTATATGTGCCTGGTCGAAAGGCCAATGGTGCGAAGCTACCATCTGAGGGATTA]

[+] EMBL CD197925             [TTCAGATAATTGGTATATGTGCCTGGTCGAAAGGCCAATGGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCCCGTCCAAATTTGCAACGGTACAATCTGGCCGTTGCTATGGTAATCTTGTTTAGTACGAGAGGAACCGCAGGTTCAGATAATTGGTATATGTGCCTGGTCGAAAGGCCAATGGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCCCGTCCAAATTTGCAACGGTACCATCTGGCCGTTGCTATGGTAATCCTGTTTAGTACGAGAGGAACCGCAGGTTCAGATAATTGGTATATGTGCCTGGTCGAAAGGCCAATGGTGCGAAGCTACCATCTGAGGGATTA]




>consensus_7596#1
TTCAGATAATTGGTATATGTGCCTGGTCGAAAGGCCAATGGTGCGAAGCTACCATCTGAG
GGATTAAGACTGAACGCCTCTAAGTCTGAATCCCGTCCAAATTTGCAACGGTACAATCTG
GCCGTTGCTATGGTAATCTTGTTTAGTACGAGAGGAACCGCAGGTTCAGATAATTGGTAT
ATGTGCCTGGTCGAAAGGCCAATGGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACG
CCTCTAAGTCTGAATCCCGTCCAAATTTGCAACGGTACCATCTGGCCGTTGCTATGGTAA
TCCTGTTTAGTACGAGAGGAACCGCAGGTTCAGATAATTGGTATATGTGCCTGGTCGAAA
GGCCAATGGTGCGAAGCTACCATCTGAGGGATTA

consensusID : consensus_7596#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 311
fasta sequence

                              [TTCAGATAATTGGTATATGTGCCTGGTCGAAAGGCCAATGGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCCCGTCCAAATTTGCAACGGTACATTCTGTATCCGACACGTGGCTGGGCAAGCTTACGTATTCCTTTTGGTTTTACCCTACTAATGAGTACATCAGTGAAGTACAATCTGGCCGTTGCTATGGTAATCCTGTTTAGTACGAGAGGAACCGCAGGTTCAGATAATTGGTATATGTGCCTGGTCGAAAGGCCAATGGTGCGAAGCTACCATCTGAGGGATTA]

[+] EMBL CD197930             [TTCAGATAATTGGTATATGTGCCTGGTCGAAAGGCCAATGGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCCCGTCCAAATTTGCAACGGTACATTCTGTATCCGACACGTGGCTGGGCAAGCTTACGTATTCCTTTTGGTTTTACCCTACTAATGAGTACATCAGTGAAGTACAATCTGGCCGTTGCTATGGTAATCCTGTTTAGTACGAGAGGAACCGCAGGTTCAGATAATTGGTATATGTGCCTGGTCGAAAGGCCAATGGTGCGAAGCTACCATCTGAGGGATTA]




>consensus_7596#2
TTCAGATAATTGGTATATGTGCCTGGTCGAAAGGCCAATGGTGCGAAGCTACCATCTGAG
GGATTAAGACTGAACGCCTCTAAGTCTGAATCCCGTCCAAATTTGCAACGGTACATTCTG
TATCCGACACGTGGCTGGGCAAGCTTACGTATTCCTTTTGGTTTTACCCTACTAATGAGT
ACATCAGTGAAGTACAATCTGGCCGTTGCTATGGTAATCCTGTTTAGTACGAGAGGAACC
GCAGGTTCAGATAATTGGTATATGTGCCTGGTCGAAAGGCCAATGGTGCGAAGCTACCAT
CTGAGGGATTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7596#1      ------------------------------------------------------------
consensus_7596#2      ------------------------------------------------------------
consensus_7596#0      TTACCCTACTAATGAGTACATCAGTGAAGTACAATCTGGCCGTTGCTATGGTAATTCTGT 60
                                                                                  

consensus_7596#1      ----------------------TTCAGATAATTGGTATATGTGCCTGGTCGAAAGGCCAA 38
consensus_7596#2      ----------------------TTCAGATAATTGGTATATGTGCCTGGTCGAAAGGCCAA 38
consensus_7596#0      TTAGTACGAGAGGAACCGCAGGTTCAGATAATTGGTATATGTGCCTGGTCGAAAGGCCAA 120
                                            **************************************

consensus_7596#1      TGGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCC----- 93
consensus_7596#2      TGGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAATCC----- 93
consensus_7596#0      TGGTGCGAAGCTACCATCTGAGGGATTAAGACTGAACGCCTCTAAGTCTGAACGCGTCCA 180
                      ****************************************************  *     

consensus_7596#1      -----------------CGTC------CAAATTTGC-----------AACG--------- 110
consensus_7596#2      -----------------CGTC------CAAATTTGC-----------AACG--------- 110
consensus_7596#0      CTAAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTAATGAGTACATCA 240
                                       ****      **  ** *            ** *         

consensus_7596#1      -----GTACAATCTGGCCGTTGCTATGGTAATCTTGTTTAGTACGAGAGGAACCGCAGGT 165
consensus_7596#2      -----GTACATTCTG-------------------TATCCGACACGTGGCTGG--GCAAGC 144
consensus_7596#0      GTGAAGTACAATCTGGCCGTTGCTATGGTAATCCTGTTTAGTACGAGAGGAACCGCAGGT 300
                           ***** ****                   * *     *** *       *** * 

consensus_7596#1      TCAGATAATTGGTATATGTGCCTGGTCGAAAGGCCAATGGTGCGAAGCTACCATCTGAGG 225
consensus_7596#2      TTACGTATTCCTT--------TTGGTT--------------------TTACCCT------ 170
consensus_7596#0      TCAGATAATTGGTATATGTGCCTGGTCGAAAGGCCAATGGTGCGAAGCTACCATCTGAGG 360
                      * *  ** *   *         ****                      **** *      

consensus_7596#1      GATTAAGACTGAACGCCTCTAAGTCTGAATCCCGTCCAAATTTGCAACGGTAC------C 279
consensus_7596#2      -ACTAA---TGAGTACATCAG----TGAA--------------------GTAC------A 196
consensus_7596#0      GATTAAGACTGAACGCCTCTAAGTCTGAATCCCGTCCAAATTTGCAACGGTACATTCTGT 420
                       * ***   ***   * **      ****                    ****       

consensus_7596#1      ATCTGGC-CGTTGCTATG---------GTAATCCTGTTTA-GTACGAGAGGAACCGCAGG 328
consensus_7596#2      ATCTGGC-CGTTGCTATG---------GTAATCCTGTTTA-GTACGAGAGGAACCGCAGG 245
consensus_7596#0      ATCCGACACGTGGCTGGGCAAGCTTACGTATTCCTTTTGGTGTCTGGACTGGACCATGTG 480
                      *** * * *** ***  *         *** **** **   **  *    * ***    *

consensus_7596#1      TTCAGATAATTGGTATATGTGCCTGGTCGAAAGGCCAATGGTGCGAAGCTACCATCTGAG 388
consensus_7596#2      TTCAGATAATTGGTATATGTGCCTGGTCGAAAGGCCAATGGTGCGAAGCTACCATCTGAG 305
consensus_7596#0      TTCGGCTA---GGCCCATTAGGTCTGGTGTTATGCCAGAGCGATGACCATANNAACCGTG 537
                      *** * **   **   **  *    *  *  * ****  *    **   **  * * * *

consensus_7596#1      GGATTA----------- 394
consensus_7596#2      GGATTA----------- 311
consensus_7596#0      CCTTTCCCCCCCCCGGG 554
                         **