cluster # 7600

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Schistosoma mansoni
cluster # 7600 cluster # 7600 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7600#0 length = 619 sequences # 4

consensus_7600#1 length = 584 sequences # 1

consensusID : consensus_7600#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 619
fasta sequence

                              [TGGTGAGGGCTAGTGATGAGTGTGTGTGTGTGTGTGTAGCTCTTTCCACCGGTTGATGTTGGTGCTGCATCTTCAAGAACAACGCGCCTCAATGTTTCATGCTGTGATCTGCTAATGCACCTTGTTACTGGGTAGAACTAATCGACTCCTAAAATTTGTGACTAGTGGTATCATGTGTGGTGGTAGTGAAGACAGAAGATAGTTTGTGTTTTGCGAGTGTGGTAGTGTCACAATTATTATTAGAAATGGTGAAATATTTTGCACACAGTACTTATTTATTGCTGTTGTTTGAAGGTGATAAATAAATGGAGATCTGGTCAACTAACCGTTGACTTCAATGAGAGAAGACTTATGGTCATTTCGATTGTTTGGTACAATATGAATTTTTGGAATGAAGCAGTTTGGTAAAAATGAATGTTATACTGGTATAGCGGTTNTATCCATTGGTAGCTTTGGTTATCTGACTGATAGGTCTTGTTATTTCAACGGAATGCATTATGACCACAACTAACATGACGTCTCAATGATGTGTAAAATCCATGTTAAATGACTTTTGCAATTGCACGCTTTNTATTAACCTACCTATGAACATACTACTTACTTGATTACCTATGANACA]

[+] EMBL CD068475             [TGGTGAGGGCTAGTGATGAGTGTGTGTGTGTGTGTGTAGCTCTTTCCACCGGTTGATGTTGGTGCTGCATCTTCAAGAACAACGCGCCTCAATGTTTCATGCTGTGATCTGCTAATGCACCTTGTTACTGGGTAGAACTAATCGACCCCTca                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD115328             [                        TGTGTGTGTGTGTAGCTCTTTCCACCGGTTGATGTTGGTGCTGCATCTTCAAGAACAACGCGCCTCAATGTTTCATGCTGTGACCTGCTAATGCACCTTGTTACTGGGTAGAACTAATCGACTCCTAAAATTTGTGACTAGTGGTATCATGTGTGGTGGTAGTGAAGACAGAAGATAGTTTGTGTTTTGCGAGTGTGGTAGTGTCACAATTATTATTAGAAATGGTGAAATATTTTGCACACAGTACTTATTTATTGCTGTTGTTTGAAGGTGATAAATAAATGGAGATCTGGTCAACTAACCGTTGACTTCAATGAGAGAAGACTTATGGTCATTTCGATTGTTTGGTACAATATGAATTTTTGGAATGAAGCAGTTTGGTAAAAATGAATGTTATACTGGTATAGCGGTTNTATCCATTGGTAGCTTTGGTTATCTGACTGATAGGTCTTGTTATTTCAACGGAATGCATTATGACCACAACTAACATGACGTCTCAATGATGTGTAAAATCCATGTTAAATGACTTTTGCAATTGCACGCTTTNTATTAACCTACCTATGAACATACTACTTACTTGATTACCTATGANACA]
[+] EMBL CD153891             [                                                                     TCTTCAAGAACAACGCGCCTCAATGTTTCATGCTGTGATCTGCTAATGCACCTTGTTACTGGGTAGAACTAATCGACTCCTAAAATTTGTGACTAGTGGTATCATGTGTGGTGGTAGTGAAGACAGAAGATAGTTTGTGTTTTGCGAGTGTGGTAGTGTCACAATTATTATTAGAAATGGTGAAATATTTTGCACACAGTACTTATTTATTGCTGTTGTTTGAAGGTGATAAATAAATGGAGACCTGGTCAACTAACCGTTGACTTCAATGAGAGAAGACTTATGGTCATTTCGATTGTTTGGTACAATATGAATTTTTGGAATGAAGCAGTTTGGTAAAAATGAATGTTATACTGGTATAGCGGTTTTATCCATTGNTAGCTTTGGTTATCTGACTGATAGGTCTTGTTATTTCAACGGAATGCAT                                                                                                                           ]
[+] EMBL CD114285             [                                                                                                                                                          TTCGCGACTAGCGGTATCATGTGTGGTGGTAGTGAACACAGAATATAG CTGTGTTTTGCGAGTGTGGTAGTGTCACAATTATTATTAGAAATGGTGAAATATTTTGCACACAGTACTTATTTATTGCTGTTGTTTGAAGGTGATAAATAAATGGAGATCTGGTCAACTAACCGTTGACTTCAATGAGAGAAGACTTATGGTCATTTCGATTGTGTGGTACAATATGAATTTTTGGAATGAAGCAGTTTGG                                                                                                                                                                                                                      ]




>consensus_7600#0
TGGTGAGGGCTAGTGATGAGTGTGTGTGTGTGTGTGTAGCTCTTTCCACCGGTTGATGTT
GGTGCTGCATCTTCAAGAACAACGCGCCTCAATGTTTCATGCTGTGATCTGCTAATGCAC
CTTGTTACTGGGTAGAACTAATCGACTCCTAAAATTTGTGACTAGTGGTATCATGTGTGG
TGGTAGTGAAGACAGAAGATAGTTTGTGTTTTGCGAGTGTGGTAGTGTCACAATTATTAT
TAGAAATGGTGAAATATTTTGCACACAGTACTTATTTATTGCTGTTGTTTGAAGGTGATA
AATAAATGGAGATCTGGTCAACTAACCGTTGACTTCAATGAGAGAAGACTTATGGTCATT
TCGATTGTTTGGTACAATATGAATTTTTGGAATGAAGCAGTTTGGTAAAAATGAATGTTA
TACTGGTATAGCGGTTNTATCCATTGGTAGCTTTGGTTATCTGACTGATAGGTCTTGTTA
TTTCAACGGAATGCATTATGACCACAACTAACATGACGTCTCAATGATGTGTAAAATCCA
TGTTAAATGACTTTTGCAATTGCACGCTTTNTATTAACCTACCTATGAACATACTACTTA
CTTGATTACCTATGANACA

consensusID : consensus_7600#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 584
fasta sequence

                              [CATTGGTAGCTTTGGTTATCTGACTGATAGGTCTTGTTATTTCAACGGAATGCATTATGACCACAACTAACATGACGTCTCAATGATGTGTAAAATCCATGTTAAATGACTTTTGCAATTGCACGCTTTTTATTAACCTACCTATGAACATACTACTTACTTGAATGTTTCCACCTCTTCCAGAGTTTCGCCATCAAGTGTGATTGGGTTATCGGCGCTCAGTCAGTGCAATTACTTGCTATTGAAGGCACAGTACAGTTGGTGATGCGAATAGCTCTGGGATTCATTTTCGATTACCGTTTCATAAAACCTCATAGAGGTCTTATATGGACTGGAGGAATAGCATTTTCTTCTGTAATAATTATCTTTATTGCATTTGCCTCTCAATTGAAGTATTTGTCTGCTCTTATGTTTTTGCGAGGGTTATTTTTGGCTCTTTATATCTCCCAACAAGCTGTAGTTTTATCGGATTTATGTGAAGGACAACCAGAAACAACGAGTCAAACAATTGCTATTGCACAAATCTGCAAAGGATTAGGAATGTTGACTGGATCTTACTTTTCTGGTCTAATCAAAGATTATAC]

[-] EMBL CD146781             [CATTGGTAGCTTTGGTTATCTGACTGATAGGTCTTGTTATTTCAACGGAATGCATTATGACCACAACTAACATGACGTCTCAATGATGTGTAAAATCCATGTTAAATGACTTTTGCAATTGCACGCTTTTTATTAACCTACCTATGAACATACTACTTACTTGAATGTTTCCACCTCTTCCAGAGTTTCGCCATCAAGTGTGATTGGGTTATCGGCGCTCAGTCAGTGCAATTACTTGCTATTGAAGGCACAGTACAGTTGGTGATGCGAATAGCTCTGGGATTCATTTTCGATTACCGTTTCATAAAACCTCATAGAGGTCTTATATGGACTGGAGGAATAGCATTTTCTTCTGTAATAATTATCTTTATTGCATTTGCCTCTCAATTGAAGTATTTGTCTGCTCTTATGTTTTTGCGAGGGTTATTTTTGGCTCTTTATATCTCCCAACAAGCTGTAGTTTTATCGGATTTATGTGAAGGACAACCAGAAACAACGAGTCAAACAATTGCTATTGCACAAATCTGCAAAGGATTAGGAATGTTGACTGGATCTTACTTTTCTGGTCTAATCAAAGATTATAC]




>consensus_7600#1
CATTGGTAGCTTTGGTTATCTGACTGATAGGTCTTGTTATTTCAACGGAATGCATTATGA
CCACAACTAACATGACGTCTCAATGATGTGTAAAATCCATGTTAAATGACTTTTGCAATT
GCACGCTTTTTATTAACCTACCTATGAACATACTACTTACTTGAATGTTTCCACCTCTTC
CAGAGTTTCGCCATCAAGTGTGATTGGGTTATCGGCGCTCAGTCAGTGCAATTACTTGCT
ATTGAAGGCACAGTACAGTTGGTGATGCGAATAGCTCTGGGATTCATTTTCGATTACCGT
TTCATAAAACCTCATAGAGGTCTTATATGGACTGGAGGAATAGCATTTTCTTCTGTAATA
ATTATCTTTATTGCATTTGCCTCTCAATTGAAGTATTTGTCTGCTCTTATGTTTTTGCGA
GGGTTATTTTTGGCTCTTTATATCTCCCAACAAGCTGTAGTTTTATCGGATTTATGTGAA
GGACAACCAGAAACAACGAGTCAAACAATTGCTATTGCACAAATCTGCAAAGGATTAGGA
ATGTTGACTGGATCTTACTTTTCTGGTCTAATCAAAGATTATAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7600#0      TGGTGAGGGCTAGTGATGAGTGTGTGTGTGTGTGTGTAGCTCTTTCCACC-GGTTGATGT 59
consensus_7600#1      ------------------------------CATTGGTAGCTTTGGTTATCTGACTGATA- 29
                                                      *  ****** *    * * *  ****  

consensus_7600#0      TGGTGCTGCATCTTCAAGAACAACGCGCCTCAATGTTTCATGCTGTGATCTGCTAATGCA 119
consensus_7600#1      -GGTCTTGTTATTTCAACGG-----------AATGCATTATGACCACAACTAACATGACG 77
                       ***  **    *****              ****  * ***     * **   *   * 

consensus_7600#0      CCTTGTTACTGGGTAGAACTAATCGACTCCTAAAATTTGTGACTAGTGGTATCATGTGTG 179
consensus_7600#1      TCTCAATGATGTGTAAAATCCAT-GTTAAATGACTTTTGCAATTGCACGCTTTTTATTAA 136
                       **   *  ** *** **   ** *     * *  ****  * *    *  *  * *   

consensus_7600#0      G-TGGTAGTGAAGACAGAAGATAGTTTGTGTTTTGCGAGTGTGGTAGTGTCACAATTATT 238
consensus_7600#1      CCTACCTATGAACATACTACTTACTTGAATGTTTCCACCTCTTCCAGAGTTTCGCCATCA 196
                        *     **** * *  *  ** **     *** *   * *   ** **  *       

consensus_7600#0      ATTAGAAATGGTGAAATATTTTGCACACAGTAC--TTATTTATTGCTGTTGTTTGAAGGT 296
consensus_7600#1      AGTGTGATTGGGTTATCGGCGCTCAGTCAGTGCAATTACTTGCTATTGAAGGCACAGTAC 256
                      * *   * ***   *        **  **** *  *** **  *  **  *    *    

consensus_7600#0      GATAAATAA-ATGGAGATCTGGTCAACTAACCGTTGACTTCAATGAGAGAAGACTT-ATG 354
consensus_7600#1      AGTTGGTGATGCGAATAGCTCTGGGATTCATTTTCGATTACCGTTTCATAAAACCTCATA 316
                        *   * *   * * * **     * * *   * ** * *  *   * ** ** * ** 

consensus_7600#0      GTCATTTCG-ATTGTTTGGTACAATATGAATTTTTGGAATGAAGCAGTTTGGTAAAAATG 413
consensus_7600#1      GAGGTCTTATATGGACTGGAGGAATAGCATTTTCTTCTGT-AATAATTATCTTTATTGCA 375
                      *   * *   ** *  ***   ****  * *** *    * **  * * *  * *     

consensus_7600#0      AATGTTATACTGGTATAGCGGTTNTATCCATTGGTAGCTTTGGTTATCTGACTGATAGGT 473
consensus_7600#1      TTTGCCTCTCAATTGAAGTATTTGTCTGCTCTTATGTTTTTGCGAGGGTTATTTTTGGCT 435
                        **     *   *  **   ** * * *  *  *   ****      * * *  * * *

consensus_7600#0      CTTGTTATTTC--AACGGAATGCATTATGACCACAACTAACATGACGTCTCAATGATGTG 531
consensus_7600#1      CTTTATATCTCCCAACAAGCTGTAGTTTTATCG-GATTTATGTGAAGGACAACCAGAAAC 494
                      ***  *** **  ***    ** * * * * *   * * *  *** *    *        

consensus_7600#0      TAAAATCCATGTTAAATGACTTTTGCAATTGCACGCTTTNTATTAACCTACCTATGAACA 591
consensus_7600#1      AACGAGTCAAAC--AATTGCTATTGCACAAATCTGCAAAGGATTAGGAATGTTGACTGGA 552
                       *  *  **     ***  ** *****       **     ****       *      *

consensus_7600#0      TACTACTTACTTGAT-TACCTATGANACA--- 619
consensus_7600#1      TCTTACTTTTCTGGTCTAATCAAAGATTATAC 584
                      *  *****   ** * **   *      *