These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7601#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1019 fasta sequence [CTTGTTCTTGTCGAATAGCTGGAACATTTTGTGAAAAGTTTTGTCAATGTCCTCCTGATTGTCCAAATAGATTTTTAGGATGTCGTTGTCGAGGTCAATGTAACACAAAATTATGTCCATGTGTTTTAGCTGTTAGAGAATGTGATCCAGATTTATGTTTATCTTGTGGTGCACATTCATCTTTTCGATCATTTGCCTCTGGGAATTCTATGGATTTACTTTCACTGCTTCAAACTACTTTACCTCCTGTTACTGGAACTTGTCGAAATGTTGCCATACAAAGAGGTTGGCGTAAACACCTTTTAATGGCACCTTCTGATGTAGCTGGTTGGGGTATATTTATTAAAGAAGCTGCAGAGAAAAATGATTTCATATATGAATATTGTGGTGAAATAATTAGTCAAGATGAAGCAGACCGACGAGGTAAAATTTATGATAAAACAATGAGCAGTTTTTTGTTCAATCTTAATCGAGATTTTGTTGTGGATGCTACACGTAAAGGGAATAAAATTCGATTTGCAAATCATTCAGTTAATCCTAATTGTCATGCTAAAGTTATCATGGTGAATGGTGATCATCGGATTGGTATTTTTGCAAAACGTGCGATTCTCCCCGGTGAAGAGTTATTCTTTGACTACCGTTATGGTCCGACAGAGCAACTTAAATATGTAGGTATTGAACGAGATACAGACGCTGCAAGTGTAATCAATAATCCTTTATGCGTATTGAATACATCTGGCGGTGATCTTAACCCCATATGCTCCAATATACCGCTTAATAACTGCATTGAAATTCCTTAGGATTACATATAAACATCTCGCTTGTTATACATAGCTCAAACAGTATTATAATGGTTCCGATTATCGCGCTCCTAAATATAACAATGAAAAACATTCAATTGGTAAGGTTGATACTCTGCTTGTGTATGTACACCTGTGTACATTCGTTGTGTTAGAATACTTCTAGAAGCAATATAACGTCATAAGGATGTCCGGAGATGAATAAAACCCAGGATCATT] [+] EMBL CD080178 [CTTGTTCTTGTCGAATAGCTGGAACATTTTGTGAAAAGTTTTGTCAATGTCCTCCTGATTGTCCAAATAGATTTTTAGGATGTCGTTGTCGAGGTCAATGTAACACAAAATTATGTCCATGTGTTTTAGCTGTTAGAGAATGTGATCCAGATTTATGTTTATCTTGTGGTGCACATTCATCTTTTCGATCATTTGCCTCTGGGAATTCTATGGATTTACTTTCACTGCTTCAAACTACTTTACCTCCTGTTACTGGAACTTGTCGAAATGTTGCCATACAAAGAGGTTGGCGTAAACACCTTTTAATGGCACCTTCTGATGTAGCTGGTTGGGGTATATTTATTAAAGAAGCTGCAGAGAAAAATGATTTCATATATGAATATTGTGGTGAAATAATTAGTCAAGATGAAGCAGACCGACGAGGTAAAATTTATGATAAAACAATGAGCAGTTTTTTGTTCAATCTTAATCGAGATTTTGTTGTGGATGCTACACGTAAAGGGAATAAAATTCGATTTGCAAATCATTCAGTTAATCCTAATTGTCATGCTAAAGTTATCATGGTGAATGGTGATCATCGGATTGGTATTTTTGCAAAACGTGCGATTCTCCCCGGTGAAGAGTTATTCTTTGACTACCGTTATGGTCCGACAGAGCAACTTAAATATGTA ] [+] EMBL CD157233 [ TTTTTGTTCAATCTTAATCGAGATTTTGTTGTGGATGCTACACGTAAAGGGAATAAAATTCGATTTGCAAATCATTCAGTTAATCCTAATTGTCATGCTAAAGTTATCATGGTGAATGGTGATCATCGGATTGGTATTTTTGCAAAACGTGCGATTCTCCCCGGTGAAGAGTTATTCTTTGACTACCGTTATGGTCCGACAGAGCAACTTAAATATGTAGGTATTGAACGAGATACAGACGCTGCAAGTGTAATCAATAATCCTTTATGCGTATTGAATACATCTGGCGGTGATCTTAACCCCATATGCTCCAATATACCGCTTAATAACTGCATTGAAATTCCTTAGGATTACATATAAACATCTCGCTTGTTATACATAGCTCAAACAGTATTATAATGGTTCCGATTATCGCGCTC ] [+] EMBL CD140822 [ ATTTTTGCAAAACGTGCGATTCTCCCCGGTGAAGAGTTATTCTTTGACTACCGTTATGGTCCGACAGAGCAACTTAAATATGTAGGTATTGAACGAGATACAGACGCTGCAAGTGTAATCAATAATCCTTTATGCGTATTGAATACATCTGGCGGTGATCTTAACCCCCTATGCTCCAATATACCGCTTAATAACTGCATTGAAATTCCTTAGGATTACATATAAACATCTCGCTTGTTATACATAGCTCAAACAGTATTATAATGGTTCCGATTATCGCGCTCCTAAATATAACAATGAAAAACATTCAATTGGTAAGGTTGATACTCTGCTTGTGTATGTACACCTGTGTACATTCGTTGTGTTAGAATACTTCTAGAAGCAATATAACGTCATAAGGATGTCCGGAGATGAATAAAACCCAGGATCATT] consensusID : consensus_7601#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 440 fasta sequence [TTCGGCACGAGGCCGAGATACAGACGCTGCAAGTGTAATCAATAATCCTTTATGCGTA-TTGAATACATCTGGCGGTGATCTTAACCCCCTATGCTCCAATATACCGCTTAATAACTGCATTGAAATTCCTTAGGATTACATATAAACATCTCGCTTGTTATACATAGCTCAAACAGTATTATAATGGTTCCGATTATCGCGCTCCTAAATATAACAATGAAAAACATTCAATTGGTAAGGTTGATACTCTGCTTGTGTATGTACGCCTGTGTACATTCGTTGTGTTAGAATGTAAATGTTTATAGTTGATGTATTTTCTGTTTATGATAAAATCTAACTGGTTTATTTATTTCCTATTTTATGTGTTTCCGTTAAATGTTATTGAATTCTTTTTGTTTATGAATAGAAATATATTGTATTACTTATTAAAAAACAGAGAA] [+] EMBL CD079819 [TTCGGCACGAGGCCGAGATACAGACGCTGCAAGTGTAATCAATAATCCTTTATGCGTA TTGAATACATCTGGCGGTGATCTTAACCCCCTATGCTCCAATATACCGCTTAATAACTGCATTGAAATTCCTTAGGATTACATATAAACATCTCGCTTGTTATACATAGCTCAAACAGTATTATAATGGTTCCGATTATCGCGCTCCTAAATATAACAATGAAAAACATTCAATTGGTAAGGTTGATACTCTGCTTGTGTATGTACGCCTGTGTACATTCGTTGTGTTAGAATGTAAATGTTTATAGTTGATGTATTTTCTGTTTATGATAAAATCTAACTGGTTTATTTATTTCCTATTTTATGTGTTTCCGTTAAATGTTATTGAATTCTTTTTGTTTATGAATAGAAATATATTGTATTACTTATTAAAAAACAGAGAA] [+] EMBL CD084043 [ ACGAGGCGNAGATACAGACGCTGCAAGTGTAATCAATAATCCTTTATGCGTANTTGAATACATCTGGCGGTGATCTTAACCCCCTATGCTCCAATATACCGCTTAATAACTGCATTGAAATTCCTTAGGATTACATATAAACATCTCGCTTGTTATACATAGCTCAAACAGTATTATAATGGTTCCGATTATCGCGCTCCTAAATATAACAATGAAAAACATTCAATTGGTAAGGTTGATACTCTGCTTGTGTATGTACGCCTGTGTACATTCGTTGTGTTAGAATGTAAATGTTTATAGTTGATGTATTTTCTGTTTATGATAAAATCTAACTGGTTTATTTATTTCCTATTTTATGTGTTTCCGTTAAATGTTATTGAATTCTTTTTGTTTATGAATAGAAATAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7601#0 CTTGTTCTTGTCGAATAGCTGGAACATTTTGTGAAAAGTTTTGTCAATGTCCTCCTGATT 60 consensus_7601#1 ------------------------------------------------------------ consensus_7601#0 GTCCAAATAGATTTTTAGGATGTCGTTGTCGAGGTCAATGTAACACAAAATTATGTCCAT 120 consensus_7601#1 ------------------------------------------------------------ consensus_7601#0 GTGTTTTAGCTGTTAGAGAATGTGATCCAGATTTATGTTTATCTTGTGGTGCACATTCAT 180 consensus_7601#1 ------------------------------------------------------------ consensus_7601#0 CTTTTCGATCATTTGCCTCTGGGAATTCTATGGATTTACTTTCACTGCTTCAAACTACTT 240 consensus_7601#1 ------------------------------------------------------------ consensus_7601#0 TACCTCCTGTTACTGGAACTTGTCGAAATGTTGCCATACAAAGAGGTTGGCGTAAACACC 300 consensus_7601#1 ------------------------------------------------------------ consensus_7601#0 TTTTAATGGCACCTTCTGATGTAGCTGGTTGGGGTATATTTATTAAAGAAGCTGCAGAGA 360 consensus_7601#1 ------------------------------------------------------------ consensus_7601#0 AAAATGATTTCATATATGAATATTGTGGTGAAATAATTAGTCAAGATGAAGCAGACCGAC 420 consensus_7601#1 ------------------------------------------------------------ consensus_7601#0 GAGGTAAAATTTATGATAAAACAATGAGCAGTTTTTTGTTCAATCTTAATCGAGATTTTG 480 consensus_7601#1 ------------------------------------------------------------ consensus_7601#0 TTGTGGATGCTACACGTAAAGGGAATAAAATTCGATTTGCAAATCATTCAGTTAATCCTA 540 consensus_7601#1 ------------------------------------------------------------ consensus_7601#0 ATTGTCATGCTAAAGTTATCATGGTGAATGGTGATCATCGGATTGGTATTTTTGCAAAAC 600 consensus_7601#1 ------------------------------------------------------------ consensus_7601#0 GTGCGATTCTCCCCGGTGAAGAGTTATTCTTTGACTACCGTTATGGTCCGACAGAGCAAC 660 consensus_7601#1 ------------------------------------------------------------ consensus_7601#0 TTAAATATGTAGGTATTGAAC-GAGATACAGACGCTGCAAGTGTAATCAATAATCCTTTA 719 consensus_7601#1 --------TTCGGCACGAGGCCGAGATACAGACGCTGCAAGTGTAATCAATAATCCTTTA 52 * ** * * ************************************** consensus_7601#0 TGCGTATTGAATACATCTGGCGGTGATCTTAACCCCATATGCTCCAATATACCGCTTAAT 779 consensus_7601#1 TGCGTATTGAATACATCTGGCGGTGATCTTAACCCCCTATGCTCCAATATACCGCTTAAT 112 ************************************ *********************** consensus_7601#0 AACTGCATTGAAATTCCTTAGGATTACATATAAACATCTCGCTTGTTATACATAGCTCAA 839 consensus_7601#1 AACTGCATTGAAATTCCTTAGGATTACATATAAACATCTCGCTTGTTATACATAGCTCAA 172 ************************************************************ consensus_7601#0 ACAGTATTATAATGGTTCCGATTATCGCGCTCCTAAATATAACAATGAAAAACATTCAAT 899 consensus_7601#1 ACAGTATTATAATGGTTCCGATTATCGCGCTCCTAAATATAACAATGAAAAACATTCAAT 232 ************************************************************ consensus_7601#0 TGGTAAGGTTGATACTCTGCTTGTGTATGTACACCTGTGTACATTCGTTGTGTTAGAAT- 958 consensus_7601#1 TGGTAAGGTTGATACTCTGCTTGTGTATGTACGCCTGTGTACATTCGTTGTGTTAGAATG 292 ******************************** ************************** consensus_7601#0 ---ACTTCTAGAAGCAATATAACGTC-----ATAAGGATGTCCGG--AGATGAATAAAAC 1008 consensus_7601#1 TAAATGTTTATAGTTGATGTATTTTCTGTTTATGATAAAATCTAACTGGTTTATTTATTT 352 * * ** * ** ** ** ** * * ** * * * * * consensus_7601#0 CCAGGATCATT------------------------------------------------- 1019 consensus_7601#1 CCTATTTTATGTGTTTCCGTTAAATGTTATTGAATTCTTTTTGTTTATGAATAGAAATAT 412 ** * ** consensus_7601#0 ---------------------------- consensus_7601#1 ATTGTATTACTTATTAAAAAACAGAGAA 440 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||