cluster # 7601

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Schistosoma mansoni
cluster # 7601 cluster # 7601 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7601#0 length = 1019 sequences # 3

consensus_7601#1 length = 440 sequences # 2

consensusID : consensus_7601#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1019
fasta sequence

                              [CTTGTTCTTGTCGAATAGCTGGAACATTTTGTGAAAAGTTTTGTCAATGTCCTCCTGATTGTCCAAATAGATTTTTAGGATGTCGTTGTCGAGGTCAATGTAACACAAAATTATGTCCATGTGTTTTAGCTGTTAGAGAATGTGATCCAGATTTATGTTTATCTTGTGGTGCACATTCATCTTTTCGATCATTTGCCTCTGGGAATTCTATGGATTTACTTTCACTGCTTCAAACTACTTTACCTCCTGTTACTGGAACTTGTCGAAATGTTGCCATACAAAGAGGTTGGCGTAAACACCTTTTAATGGCACCTTCTGATGTAGCTGGTTGGGGTATATTTATTAAAGAAGCTGCAGAGAAAAATGATTTCATATATGAATATTGTGGTGAAATAATTAGTCAAGATGAAGCAGACCGACGAGGTAAAATTTATGATAAAACAATGAGCAGTTTTTTGTTCAATCTTAATCGAGATTTTGTTGTGGATGCTACACGTAAAGGGAATAAAATTCGATTTGCAAATCATTCAGTTAATCCTAATTGTCATGCTAAAGTTATCATGGTGAATGGTGATCATCGGATTGGTATTTTTGCAAAACGTGCGATTCTCCCCGGTGAAGAGTTATTCTTTGACTACCGTTATGGTCCGACAGAGCAACTTAAATATGTAGGTATTGAACGAGATACAGACGCTGCAAGTGTAATCAATAATCCTTTATGCGTATTGAATACATCTGGCGGTGATCTTAACCCCATATGCTCCAATATACCGCTTAATAACTGCATTGAAATTCCTTAGGATTACATATAAACATCTCGCTTGTTATACATAGCTCAAACAGTATTATAATGGTTCCGATTATCGCGCTCCTAAATATAACAATGAAAAACATTCAATTGGTAAGGTTGATACTCTGCTTGTGTATGTACACCTGTGTACATTCGTTGTGTTAGAATACTTCTAGAAGCAATATAACGTCATAAGGATGTCCGGAGATGAATAAAACCCAGGATCATT]

[+] EMBL CD080178             [CTTGTTCTTGTCGAATAGCTGGAACATTTTGTGAAAAGTTTTGTCAATGTCCTCCTGATTGTCCAAATAGATTTTTAGGATGTCGTTGTCGAGGTCAATGTAACACAAAATTATGTCCATGTGTTTTAGCTGTTAGAGAATGTGATCCAGATTTATGTTTATCTTGTGGTGCACATTCATCTTTTCGATCATTTGCCTCTGGGAATTCTATGGATTTACTTTCACTGCTTCAAACTACTTTACCTCCTGTTACTGGAACTTGTCGAAATGTTGCCATACAAAGAGGTTGGCGTAAACACCTTTTAATGGCACCTTCTGATGTAGCTGGTTGGGGTATATTTATTAAAGAAGCTGCAGAGAAAAATGATTTCATATATGAATATTGTGGTGAAATAATTAGTCAAGATGAAGCAGACCGACGAGGTAAAATTTATGATAAAACAATGAGCAGTTTTTTGTTCAATCTTAATCGAGATTTTGTTGTGGATGCTACACGTAAAGGGAATAAAATTCGATTTGCAAATCATTCAGTTAATCCTAATTGTCATGCTAAAGTTATCATGGTGAATGGTGATCATCGGATTGGTATTTTTGCAAAACGTGCGATTCTCCCCGGTGAAGAGTTATTCTTTGACTACCGTTATGGTCCGACAGAGCAACTTAAATATGTA                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD157233             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TTTTTGTTCAATCTTAATCGAGATTTTGTTGTGGATGCTACACGTAAAGGGAATAAAATTCGATTTGCAAATCATTCAGTTAATCCTAATTGTCATGCTAAAGTTATCATGGTGAATGGTGATCATCGGATTGGTATTTTTGCAAAACGTGCGATTCTCCCCGGTGAAGAGTTATTCTTTGACTACCGTTATGGTCCGACAGAGCAACTTAAATATGTAGGTATTGAACGAGATACAGACGCTGCAAGTGTAATCAATAATCCTTTATGCGTATTGAATACATCTGGCGGTGATCTTAACCCCATATGCTCCAATATACCGCTTAATAACTGCATTGAAATTCCTTAGGATTACATATAAACATCTCGCTTGTTATACATAGCTCAAACAGTATTATAATGGTTCCGATTATCGCGCTC                                                                                                                                                    ]
[+] EMBL CD140822             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ATTTTTGCAAAACGTGCGATTCTCCCCGGTGAAGAGTTATTCTTTGACTACCGTTATGGTCCGACAGAGCAACTTAAATATGTAGGTATTGAACGAGATACAGACGCTGCAAGTGTAATCAATAATCCTTTATGCGTATTGAATACATCTGGCGGTGATCTTAACCCCCTATGCTCCAATATACCGCTTAATAACTGCATTGAAATTCCTTAGGATTACATATAAACATCTCGCTTGTTATACATAGCTCAAACAGTATTATAATGGTTCCGATTATCGCGCTCCTAAATATAACAATGAAAAACATTCAATTGGTAAGGTTGATACTCTGCTTGTGTATGTACACCTGTGTACATTCGTTGTGTTAGAATACTTCTAGAAGCAATATAACGTCATAAGGATGTCCGGAGATGAATAAAACCCAGGATCATT]




>consensus_7601#0
CTTGTTCTTGTCGAATAGCTGGAACATTTTGTGAAAAGTTTTGTCAATGTCCTCCTGATT
GTCCAAATAGATTTTTAGGATGTCGTTGTCGAGGTCAATGTAACACAAAATTATGTCCAT
GTGTTTTAGCTGTTAGAGAATGTGATCCAGATTTATGTTTATCTTGTGGTGCACATTCAT
CTTTTCGATCATTTGCCTCTGGGAATTCTATGGATTTACTTTCACTGCTTCAAACTACTT
TACCTCCTGTTACTGGAACTTGTCGAAATGTTGCCATACAAAGAGGTTGGCGTAAACACC
TTTTAATGGCACCTTCTGATGTAGCTGGTTGGGGTATATTTATTAAAGAAGCTGCAGAGA
AAAATGATTTCATATATGAATATTGTGGTGAAATAATTAGTCAAGATGAAGCAGACCGAC
GAGGTAAAATTTATGATAAAACAATGAGCAGTTTTTTGTTCAATCTTAATCGAGATTTTG
TTGTGGATGCTACACGTAAAGGGAATAAAATTCGATTTGCAAATCATTCAGTTAATCCTA
ATTGTCATGCTAAAGTTATCATGGTGAATGGTGATCATCGGATTGGTATTTTTGCAAAAC
GTGCGATTCTCCCCGGTGAAGAGTTATTCTTTGACTACCGTTATGGTCCGACAGAGCAAC
TTAAATATGTAGGTATTGAACGAGATACAGACGCTGCAAGTGTAATCAATAATCCTTTAT
GCGTATTGAATACATCTGGCGGTGATCTTAACCCCATATGCTCCAATATACCGCTTAATA
ACTGCATTGAAATTCCTTAGGATTACATATAAACATCTCGCTTGTTATACATAGCTCAAA
CAGTATTATAATGGTTCCGATTATCGCGCTCCTAAATATAACAATGAAAAACATTCAATT
GGTAAGGTTGATACTCTGCTTGTGTATGTACACCTGTGTACATTCGTTGTGTTAGAATAC
TTCTAGAAGCAATATAACGTCATAAGGATGTCCGGAGATGAATAAAACCCAGGATCATT

consensusID : consensus_7601#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 440
fasta sequence

                              [TTCGGCACGAGGCCGAGATACAGACGCTGCAAGTGTAATCAATAATCCTTTATGCGTA-TTGAATACATCTGGCGGTGATCTTAACCCCCTATGCTCCAATATACCGCTTAATAACTGCATTGAAATTCCTTAGGATTACATATAAACATCTCGCTTGTTATACATAGCTCAAACAGTATTATAATGGTTCCGATTATCGCGCTCCTAAATATAACAATGAAAAACATTCAATTGGTAAGGTTGATACTCTGCTTGTGTATGTACGCCTGTGTACATTCGTTGTGTTAGAATGTAAATGTTTATAGTTGATGTATTTTCTGTTTATGATAAAATCTAACTGGTTTATTTATTTCCTATTTTATGTGTTTCCGTTAAATGTTATTGAATTCTTTTTGTTTATGAATAGAAATATATTGTATTACTTATTAAAAAACAGAGAA]

[+] EMBL CD079819             [TTCGGCACGAGGCCGAGATACAGACGCTGCAAGTGTAATCAATAATCCTTTATGCGTA TTGAATACATCTGGCGGTGATCTTAACCCCCTATGCTCCAATATACCGCTTAATAACTGCATTGAAATTCCTTAGGATTACATATAAACATCTCGCTTGTTATACATAGCTCAAACAGTATTATAATGGTTCCGATTATCGCGCTCCTAAATATAACAATGAAAAACATTCAATTGGTAAGGTTGATACTCTGCTTGTGTATGTACGCCTGTGTACATTCGTTGTGTTAGAATGTAAATGTTTATAGTTGATGTATTTTCTGTTTATGATAAAATCTAACTGGTTTATTTATTTCCTATTTTATGTGTTTCCGTTAAATGTTATTGAATTCTTTTTGTTTATGAATAGAAATATATTGTATTACTTATTAAAAAACAGAGAA]
[+] EMBL CD084043             [      ACGAGGCGNAGATACAGACGCTGCAAGTGTAATCAATAATCCTTTATGCGTANTTGAATACATCTGGCGGTGATCTTAACCCCCTATGCTCCAATATACCGCTTAATAACTGCATTGAAATTCCTTAGGATTACATATAAACATCTCGCTTGTTATACATAGCTCAAACAGTATTATAATGGTTCCGATTATCGCGCTCCTAAATATAACAATGAAAAACATTCAATTGGTAAGGTTGATACTCTGCTTGTGTATGTACGCCTGTGTACATTCGTTGTGTTAGAATGTAAATGTTTATAGTTGATGTATTTTCTGTTTATGATAAAATCTAACTGGTTTATTTATTTCCTATTTTATGTGTTTCCGTTAAATGTTATTGAATTCTTTTTGTTTATGAATAGAAATAT                            ]




>consensus_7601#1
TTCGGCACGAGGCCGAGATACAGACGCTGCAAGTGTAATCAATAATCCTTTATGCGTATT
GAATACATCTGGCGGTGATCTTAACCCCCTATGCTCCAATATACCGCTTAATAACTGCAT
TGAAATTCCTTAGGATTACATATAAACATCTCGCTTGTTATACATAGCTCAAACAGTATT
ATAATGGTTCCGATTATCGCGCTCCTAAATATAACAATGAAAAACATTCAATTGGTAAGG
TTGATACTCTGCTTGTGTATGTACGCCTGTGTACATTCGTTGTGTTAGAATGTAAATGTT
TATAGTTGATGTATTTTCTGTTTATGATAAAATCTAACTGGTTTATTTATTTCCTATTTT
ATGTGTTTCCGTTAAATGTTATTGAATTCTTTTTGTTTATGAATAGAAATATATTGTATT
ACTTATTAAAAAACAGAGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7601#0      CTTGTTCTTGTCGAATAGCTGGAACATTTTGTGAAAAGTTTTGTCAATGTCCTCCTGATT 60
consensus_7601#1      ------------------------------------------------------------
                                                                                  

consensus_7601#0      GTCCAAATAGATTTTTAGGATGTCGTTGTCGAGGTCAATGTAACACAAAATTATGTCCAT 120
consensus_7601#1      ------------------------------------------------------------
                                                                                  

consensus_7601#0      GTGTTTTAGCTGTTAGAGAATGTGATCCAGATTTATGTTTATCTTGTGGTGCACATTCAT 180
consensus_7601#1      ------------------------------------------------------------
                                                                                  

consensus_7601#0      CTTTTCGATCATTTGCCTCTGGGAATTCTATGGATTTACTTTCACTGCTTCAAACTACTT 240
consensus_7601#1      ------------------------------------------------------------
                                                                                  

consensus_7601#0      TACCTCCTGTTACTGGAACTTGTCGAAATGTTGCCATACAAAGAGGTTGGCGTAAACACC 300
consensus_7601#1      ------------------------------------------------------------
                                                                                  

consensus_7601#0      TTTTAATGGCACCTTCTGATGTAGCTGGTTGGGGTATATTTATTAAAGAAGCTGCAGAGA 360
consensus_7601#1      ------------------------------------------------------------
                                                                                  

consensus_7601#0      AAAATGATTTCATATATGAATATTGTGGTGAAATAATTAGTCAAGATGAAGCAGACCGAC 420
consensus_7601#1      ------------------------------------------------------------
                                                                                  

consensus_7601#0      GAGGTAAAATTTATGATAAAACAATGAGCAGTTTTTTGTTCAATCTTAATCGAGATTTTG 480
consensus_7601#1      ------------------------------------------------------------
                                                                                  

consensus_7601#0      TTGTGGATGCTACACGTAAAGGGAATAAAATTCGATTTGCAAATCATTCAGTTAATCCTA 540
consensus_7601#1      ------------------------------------------------------------
                                                                                  

consensus_7601#0      ATTGTCATGCTAAAGTTATCATGGTGAATGGTGATCATCGGATTGGTATTTTTGCAAAAC 600
consensus_7601#1      ------------------------------------------------------------
                                                                                  

consensus_7601#0      GTGCGATTCTCCCCGGTGAAGAGTTATTCTTTGACTACCGTTATGGTCCGACAGAGCAAC 660
consensus_7601#1      ------------------------------------------------------------
                                                                                  

consensus_7601#0      TTAAATATGTAGGTATTGAAC-GAGATACAGACGCTGCAAGTGTAATCAATAATCCTTTA 719
consensus_7601#1      --------TTCGGCACGAGGCCGAGATACAGACGCTGCAAGTGTAATCAATAATCCTTTA 52
                               * ** *     * **************************************

consensus_7601#0      TGCGTATTGAATACATCTGGCGGTGATCTTAACCCCATATGCTCCAATATACCGCTTAAT 779
consensus_7601#1      TGCGTATTGAATACATCTGGCGGTGATCTTAACCCCCTATGCTCCAATATACCGCTTAAT 112
                      ************************************ ***********************

consensus_7601#0      AACTGCATTGAAATTCCTTAGGATTACATATAAACATCTCGCTTGTTATACATAGCTCAA 839
consensus_7601#1      AACTGCATTGAAATTCCTTAGGATTACATATAAACATCTCGCTTGTTATACATAGCTCAA 172
                      ************************************************************

consensus_7601#0      ACAGTATTATAATGGTTCCGATTATCGCGCTCCTAAATATAACAATGAAAAACATTCAAT 899
consensus_7601#1      ACAGTATTATAATGGTTCCGATTATCGCGCTCCTAAATATAACAATGAAAAACATTCAAT 232
                      ************************************************************

consensus_7601#0      TGGTAAGGTTGATACTCTGCTTGTGTATGTACACCTGTGTACATTCGTTGTGTTAGAAT- 958
consensus_7601#1      TGGTAAGGTTGATACTCTGCTTGTGTATGTACGCCTGTGTACATTCGTTGTGTTAGAATG 292
                      ******************************** ************************** 

consensus_7601#0      ---ACTTCTAGAAGCAATATAACGTC-----ATAAGGATGTCCGG--AGATGAATAAAAC 1008
consensus_7601#1      TAAATGTTTATAGTTGATGTATTTTCTGTTTATGATAAAATCTAACTGGTTTATTTATTT 352
                         *  * ** *    ** **   **     ** *  *  **      * * * * *   

consensus_7601#0      CCAGGATCATT------------------------------------------------- 1019
consensus_7601#1      CCTATTTTATGTGTTTCCGTTAAATGTTATTGAATTCTTTTTGTTTATGAATAGAAATAT 412
                      **    * **                                                  

consensus_7601#0      ----------------------------
consensus_7601#1      ATTGTATTACTTATTAAAAAACAGAGAA 440