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Schistosoma mansoni
cluster # 7601 cluster # 7601       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7601#0 length = 1019 sequences # 3  
consensus_7601#1 length = 440 sequences # 2  

consensusID : consensus_7601#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1019
fasta sequence
                              [CTTGTTCTTGTCGAATAGCTGGAACATTTTGTGAAAAGTTTTGTCAATGTCCTCCTGATTGTCCAAATAGATTTTTAGGATGTCGTTGTCGAGGTCAATGTAACACAAAATTATGTCCATGTGTTTTAGCTGTTAGAGAATGTGATCCAGATTTATGTTTATCTTGTGGTGCACATTCATCTTTTCGATCATTTGCCTCTGGGAATTCTATGGATTTACTTTCACTGCTTCAAACTACTTTACCTCCTGTTACTGGAACTTGTCGAAATGTTGCCATACAAAGAGGTTGGCGTAAACACCTTTTAATGGCACCTTCTGATGTAGCTGGTTGGGGTATATTTATTAAAGAAGCTGCAGAGAAAAATGATTTCATATATGAATATTGTGGTGAAATAATTAGTCAAGATGAAGCAGACCGACGAGGTAAAATTTATGATAAAACAATGAGCAGTTTTTTGTTCAATCTTAATCGAGATTTTGTTGTGGATGCTACACGTAAAGGGAATAAAATTCGATTTGCAAATCATTCAGTTAATCCTAATTGTCATGCTAAAGTTATCATGGTGAATGGTGATCATCGGATTGGTATTTTTGCAAAACGTGCGATTCTCCCCGGTGAAGAGTTATTCTTTGACTACCGTTATGGTCCGACAGAGCAACTTAAATATGTAGGTATTGAACGAGATACAGACGCTGCAAGTGTAATCAATAATCCTTTATGCGTATTGAATACATCTGGCGGTGATCTTAACCCCATATGCTCCAATATACCGCTTAATAACTGCATTGAAATTCCTTAGGATTACATATAAACATCTCGCTTGTTATACATAGCTCAAACAGTATTATAATGGTTCCGATTATCGCGCTCCTAAATATAACAATGAAAAACATTCAATTGGTAAGGTTGATACTCTGCTTGTGTATGTACACCTGTGTACATTCGTTGTGTTAGAATACTTCTAGAAGCAATATAACGTCATAAGGATGTCCGGAGATGAATAAAACCCAGGATCATT]

[+] EMBL CD080178             [CTTGTTCTTGTCGAATAGCTGGAACATTTTGTGAAAAGTTTTGTCAATGTCCTCCTGATTGTCCAAATAGATTTTTAGGATGTCGTTGTCGAGGTCAATGTAACACAAAATTATGTCCATGTGTTTTAGCTGTTAGAGAATGTGATCCAGATTTATGTTTATCTTGTGGTGCACATTCATCTTTTCGATCATTTGCCTCTGGGAATTCTATGGATTTACTTTCACTGCTTCAAACTACTTTACCTCCTGTTACTGGAACTTGTCGAAATGTTGCCATACAAAGAGGTTGGCGTAAACACCTTTTAATGGCACCTTCTGATGTAGCTGGTTGGGGTATATTTATTAAAGAAGCTGCAGAGAAAAATGATTTCATATATGAATATTGTGGTGAAATAATTAGTCAAGATGAAGCAGACCGACGAGGTAAAATTTATGATAAAACAATGAGCAGTTTTTTGTTCAATCTTAATCGAGATTTTGTTGTGGATGCTACACGTAAAGGGAATAAAATTCGATTTGCAAATCATTCAGTTAATCCTAATTGTCATGCTAAAGTTATCATGGTGAATGGTGATCATCGGATTGGTATTTTTGCAAAACGTGCGATTCTCCCCGGTGAAGAGTTATTCTTTGACTACCGTTATGGTCCGACAGAGCAACTTAAATATGTA                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD157233             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TTTTTGTTCAATCTTAATCGAGATTTTGTTGTGGATGCTACACGTAAAGGGAATAAAATTCGATTTGCAAATCATTCAGTTAATCCTAATTGTCATGCTAAAGTTATCATGGTGAATGGTGATCATCGGATTGGTATTTTTGCAAAACGTGCGATTCTCCCCGGTGAAGAGTTATTCTTTGACTACCGTTATGGTCCGACAGAGCAACTTAAATATGTAGGTATTGAACGAGATACAGACGCTGCAAGTGTAATCAATAATCCTTTATGCGTATTGAATACATCTGGCGGTGATCTTAACCCCATATGCTCCAATATACCGCTTAATAACTGCATTGAAATTCCTTAGGATTACATATAAACATCTCGCTTGTTATACATAGCTCAAACAGTATTATAATGGTTCCGATTATCGCGCTC                                                                                                                                                    ]
[+] EMBL CD140822             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ATTTTTGCAAAACGTGCGATTCTCCCCGGTGAAGAGTTATTCTTTGACTACCGTTATGGTCCGACAGAGCAACTTAAATATGTAGGTATTGAACGAGATACAGACGCTGCAAGTGTAATCAATAATCCTTTATGCGTATTGAATACATCTGGCGGTGATCTTAACCCCCTATGCTCCAATATACCGCTTAATAACTGCATTGAAATTCCTTAGGATTACATATAAACATCTCGCTTGTTATACATAGCTCAAACAGTATTATAATGGTTCCGATTATCGCGCTCCTAAATATAACAATGAAAAACATTCAATTGGTAAGGTTGATACTCTGCTTGTGTATGTACACCTGTGTACATTCGTTGTGTTAGAATACTTCTAGAAGCAATATAACGTCATAAGGATGTCCGGAGATGAATAAAACCCAGGATCATT]


>consensus_7601#0 CTTGTTCTTGTCGAATAGCTGGAACATTTTGTGAAAAGTTTTGTCAATGTCCTCCTGATT GTCCAAATAGATTTTTAGGATGTCGTTGTCGAGGTCAATGTAACACAAAATTATGTCCAT GTGTTTTAGCTGTTAGAGAATGTGATCCAGATTTATGTTTATCTTGTGGTGCACATTCAT CTTTTCGATCATTTGCCTCTGGGAATTCTATGGATTTACTTTCACTGCTTCAAACTACTT TACCTCCTGTTACTGGAACTTGTCGAAATGTTGCCATACAAAGAGGTTGGCGTAAACACC TTTTAATGGCACCTTCTGATGTAGCTGGTTGGGGTATATTTATTAAAGAAGCTGCAGAGA AAAATGATTTCATATATGAATATTGTGGTGAAATAATTAGTCAAGATGAAGCAGACCGAC GAGGTAAAATTTATGATAAAACAATGAGCAGTTTTTTGTTCAATCTTAATCGAGATTTTG TTGTGGATGCTACACGTAAAGGGAATAAAATTCGATTTGCAAATCATTCAGTTAATCCTA ATTGTCATGCTAAAGTTATCATGGTGAATGGTGATCATCGGATTGGTATTTTTGCAAAAC GTGCGATTCTCCCCGGTGAAGAGTTATTCTTTGACTACCGTTATGGTCCGACAGAGCAAC TTAAATATGTAGGTATTGAACGAGATACAGACGCTGCAAGTGTAATCAATAATCCTTTAT GCGTATTGAATACATCTGGCGGTGATCTTAACCCCATATGCTCCAATATACCGCTTAATA ACTGCATTGAAATTCCTTAGGATTACATATAAACATCTCGCTTGTTATACATAGCTCAAA CAGTATTATAATGGTTCCGATTATCGCGCTCCTAAATATAACAATGAAAAACATTCAATT GGTAAGGTTGATACTCTGCTTGTGTATGTACACCTGTGTACATTCGTTGTGTTAGAATAC TTCTAGAAGCAATATAACGTCATAAGGATGTCCGGAGATGAATAAAACCCAGGATCATT



consensusID : consensus_7601#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 440
fasta sequence
                              [TTCGGCACGAGGCCGAGATACAGACGCTGCAAGTGTAATCAATAATCCTTTATGCGTA-TTGAATACATCTGGCGGTGATCTTAACCCCCTATGCTCCAATATACCGCTTAATAACTGCATTGAAATTCCTTAGGATTACATATAAACATCTCGCTTGTTATACATAGCTCAAACAGTATTATAATGGTTCCGATTATCGCGCTCCTAAATATAACAATGAAAAACATTCAATTGGTAAGGTTGATACTCTGCTTGTGTATGTACGCCTGTGTACATTCGTTGTGTTAGAATGTAAATGTTTATAGTTGATGTATTTTCTGTTTATGATAAAATCTAACTGGTTTATTTATTTCCTATTTTATGTGTTTCCGTTAAATGTTATTGAATTCTTTTTGTTTATGAATAGAAATATATTGTATTACTTATTAAAAAACAGAGAA]

[+] EMBL CD079819             [TTCGGCACGAGGCCGAGATACAGACGCTGCAAGTGTAATCAATAATCCTTTATGCGTA TTGAATACATCTGGCGGTGATCTTAACCCCCTATGCTCCAATATACCGCTTAATAACTGCATTGAAATTCCTTAGGATTACATATAAACATCTCGCTTGTTATACATAGCTCAAACAGTATTATAATGGTTCCGATTATCGCGCTCCTAAATATAACAATGAAAAACATTCAATTGGTAAGGTTGATACTCTGCTTGTGTATGTACGCCTGTGTACATTCGTTGTGTTAGAATGTAAATGTTTATAGTTGATGTATTTTCTGTTTATGATAAAATCTAACTGGTTTATTTATTTCCTATTTTATGTGTTTCCGTTAAATGTTATTGAATTCTTTTTGTTTATGAATAGAAATATATTGTATTACTTATTAAAAAACAGAGAA]
[+] EMBL CD084043             [      ACGAGGCGNAGATACAGACGCTGCAAGTGTAATCAATAATCCTTTATGCGTANTTGAATACATCTGGCGGTGATCTTAACCCCCTATGCTCCAATATACCGCTTAATAACTGCATTGAAATTCCTTAGGATTACATATAAACATCTCGCTTGTTATACATAGCTCAAACAGTATTATAATGGTTCCGATTATCGCGCTCCTAAATATAACAATGAAAAACATTCAATTGGTAAGGTTGATACTCTGCTTGTGTATGTACGCCTGTGTACATTCGTTGTGTTAGAATGTAAATGTTTATAGTTGATGTATTTTCTGTTTATGATAAAATCTAACTGGTTTATTTATTTCCTATTTTATGTGTTTCCGTTAAATGTTATTGAATTCTTTTTGTTTATGAATAGAAATAT                            ]


>consensus_7601#1 TTCGGCACGAGGCCGAGATACAGACGCTGCAAGTGTAATCAATAATCCTTTATGCGTATT GAATACATCTGGCGGTGATCTTAACCCCCTATGCTCCAATATACCGCTTAATAACTGCAT TGAAATTCCTTAGGATTACATATAAACATCTCGCTTGTTATACATAGCTCAAACAGTATT ATAATGGTTCCGATTATCGCGCTCCTAAATATAACAATGAAAAACATTCAATTGGTAAGG TTGATACTCTGCTTGTGTATGTACGCCTGTGTACATTCGTTGTGTTAGAATGTAAATGTT TATAGTTGATGTATTTTCTGTTTATGATAAAATCTAACTGGTTTATTTATTTCCTATTTT ATGTGTTTCCGTTAAATGTTATTGAATTCTTTTTGTTTATGAATAGAAATATATTGTATT ACTTATTAAAAAACAGAGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7601#0      CTTGTTCTTGTCGAATAGCTGGAACATTTTGTGAAAAGTTTTGTCAATGTCCTCCTGATT 60
consensus_7601#1      ------------------------------------------------------------
                                                                                  

consensus_7601#0      GTCCAAATAGATTTTTAGGATGTCGTTGTCGAGGTCAATGTAACACAAAATTATGTCCAT 120
consensus_7601#1      ------------------------------------------------------------
                                                                                  

consensus_7601#0      GTGTTTTAGCTGTTAGAGAATGTGATCCAGATTTATGTTTATCTTGTGGTGCACATTCAT 180
consensus_7601#1      ------------------------------------------------------------
                                                                                  

consensus_7601#0      CTTTTCGATCATTTGCCTCTGGGAATTCTATGGATTTACTTTCACTGCTTCAAACTACTT 240
consensus_7601#1      ------------------------------------------------------------
                                                                                  

consensus_7601#0      TACCTCCTGTTACTGGAACTTGTCGAAATGTTGCCATACAAAGAGGTTGGCGTAAACACC 300
consensus_7601#1      ------------------------------------------------------------
                                                                                  

consensus_7601#0      TTTTAATGGCACCTTCTGATGTAGCTGGTTGGGGTATATTTATTAAAGAAGCTGCAGAGA 360
consensus_7601#1      ------------------------------------------------------------
                                                                                  

consensus_7601#0      AAAATGATTTCATATATGAATATTGTGGTGAAATAATTAGTCAAGATGAAGCAGACCGAC 420
consensus_7601#1      ------------------------------------------------------------
                                                                                  

consensus_7601#0      GAGGTAAAATTTATGATAAAACAATGAGCAGTTTTTTGTTCAATCTTAATCGAGATTTTG 480
consensus_7601#1      ------------------------------------------------------------
                                                                                  

consensus_7601#0      TTGTGGATGCTACACGTAAAGGGAATAAAATTCGATTTGCAAATCATTCAGTTAATCCTA 540
consensus_7601#1      ------------------------------------------------------------
                                                                                  

consensus_7601#0      ATTGTCATGCTAAAGTTATCATGGTGAATGGTGATCATCGGATTGGTATTTTTGCAAAAC 600
consensus_7601#1      ------------------------------------------------------------
                                                                                  

consensus_7601#0      GTGCGATTCTCCCCGGTGAAGAGTTATTCTTTGACTACCGTTATGGTCCGACAGAGCAAC 660
consensus_7601#1      ------------------------------------------------------------
                                                                                  

consensus_7601#0      TTAAATATGTAGGTATTGAAC-GAGATACAGACGCTGCAAGTGTAATCAATAATCCTTTA 719
consensus_7601#1      --------TTCGGCACGAGGCCGAGATACAGACGCTGCAAGTGTAATCAATAATCCTTTA 52
                               * ** *     * **************************************

consensus_7601#0      TGCGTATTGAATACATCTGGCGGTGATCTTAACCCCATATGCTCCAATATACCGCTTAAT 779
consensus_7601#1      TGCGTATTGAATACATCTGGCGGTGATCTTAACCCCCTATGCTCCAATATACCGCTTAAT 112
                      ************************************ ***********************

consensus_7601#0      AACTGCATTGAAATTCCTTAGGATTACATATAAACATCTCGCTTGTTATACATAGCTCAA 839
consensus_7601#1      AACTGCATTGAAATTCCTTAGGATTACATATAAACATCTCGCTTGTTATACATAGCTCAA 172
                      ************************************************************

consensus_7601#0      ACAGTATTATAATGGTTCCGATTATCGCGCTCCTAAATATAACAATGAAAAACATTCAAT 899
consensus_7601#1      ACAGTATTATAATGGTTCCGATTATCGCGCTCCTAAATATAACAATGAAAAACATTCAAT 232
                      ************************************************************

consensus_7601#0      TGGTAAGGTTGATACTCTGCTTGTGTATGTACACCTGTGTACATTCGTTGTGTTAGAAT- 958
consensus_7601#1      TGGTAAGGTTGATACTCTGCTTGTGTATGTACGCCTGTGTACATTCGTTGTGTTAGAATG 292
                      ******************************** ************************** 

consensus_7601#0      ---ACTTCTAGAAGCAATATAACGTC-----ATAAGGATGTCCGG--AGATGAATAAAAC 1008
consensus_7601#1      TAAATGTTTATAGTTGATGTATTTTCTGTTTATGATAAAATCTAACTGGTTTATTTATTT 352
                         *  * ** *    ** **   **     ** *  *  **      * * * * *   

consensus_7601#0      CCAGGATCATT------------------------------------------------- 1019
consensus_7601#1      CCTATTTTATGTGTTTCCGTTAAATGTTATTGAATTCTTTTTGTTTATGAATAGAAATAT 412
                      **    * **                                                  

consensus_7601#0      ----------------------------
consensus_7601#1      ATTGTATTACTTATTAAAAAACAGAGAA 440
                                                  




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)