cluster # 7602

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Schistosoma mansoni
cluster # 7602 cluster # 7602 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7602#0 length = 794 sequences # 4

consensus_7602#1 length = 385 sequences # 1

consensusID : consensus_7602#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 794
fasta sequence

                              [AACTTCAGATATATTGACAGGAGGTCAAAATGCAACTGGTCTAATCTCAGTAAGCATACCACCTACAAGGCATGATATTCTGCATGCATGTGATATAGCTGAAGATGTTGGAATTGCATTCGGTTATGATAATATACCTGAATCGTTACCACAAACCTATTGTGTAGCTGGTAATCAACCAATCAGTCGATTGACGGATCTTGTTCGTGCTGAAATAGCTCAGATGGGATTTACTGAAGCATTAAGTTTCTCATTATGTTCCAGGGAAGATATCGGTACTAAACTAAGACAAAAATTAGATGATATCCCAGCTGTACACATATCTAATCCTAAAACGCTTGATTTTCAAGTTGTCAGAACCAGTTTATTACCAGGATTGTTGAATACATTAGCCAGTAATAGAAGTTTACCATTACCTTTGAAATTATTTGAAGTCCAAGATATTGTACTGAAAAATCCGTCTAAAGATGTTGGCGCTAGCAATCATCGACGTATTTGTGCAGTTTACTACAATAAAAATTCTGGTTTTGAAATCATTCATGGTTTGTTGGATAGATTAATGCCATTGTTACAAGTTGAATCGATTTTGTCAAAAACAACAAAGAAATCTAATGATCATGAGAGAAACTCGAATCTAAGTTATAGATTGAACGCTACATCCGATCCAACATACTTTGATGGTCGTTGTGCTGATATTATATTGGAGCCTGGTAGTAAAATTATTGGACGATTAGGTATTCTGCATCCTGATGTTATACGAAATTTTGAATTGACAATGCCTTGTTCAGCTTTAG]

[-] EMBL CD097476             [AACTTCAGATATATTGACAGGAGGTCAAAATGCAACTGGTCTAATCTCAGTAAGCATACCACCTACAAGGCATGATATTCTGCATGCATGTGATATAGCTGAAGATGTTGGAATTGCATTCGGTTATGATAATATACCTGAATCGTTACCACAAACCTATTGTGTAGCTGGTAATCAACCAATCAGTCGATTGACGGATCTTGTTCGTGCTGAAATAGCTCAGATGGGATTTACTGAAGCATTAAGTTTCTCATTATGTTCCAGGGAAGATATCGGTACTAAACTAAGACAAAAATTAGATGATATCCCAGCTGTACACATATCTAATCCTAAAACGCTTGATTTTCAAGTTGTCAGAACCAGTTTATTACCAGGATTGTTGAATACATTAGCCAGTAATAGAAGTTTACCATTACCTTTGAAATT                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD097477             [AACTTCAGATATATTGACAGGAGGTCAAAATGCAACTGGTCTAATCTCAGTAAGCATACCACCTACAAGGCATGATATTCTGCATGCATGTGATATAGCTGAAGATGTTGGAATTGCATTCGGTTATGATAATATACCTGAATCGTTACCACAAACCTATTGTGTAGCTGGTAATCAACCAATCAGTCGATTGACGGATCTTGTTCGTGCTGAAATAGCTCAGATGGGATTTACTGAAGCATTAAGTTTCTCATTATGTTCCAGGGAAGATATCGGTACTAAACTAAGACAAAAATTAGATGATATCCCAGCTGTACACATATCTAATCCTAAAACGCTTGATTTTCAAGTTGTCAGAACCAGTTTATTACCAGGATTGTTGAATACATTAGCCAGTAATAGAAGTTTACCATTACCTTTGAAATT                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD084392             [                                                                                                                                       gCCTGAATCGTTACCACAAACCTATTGTGTAGCTGGTAATCAACCAATCAGTCGATTGACGGATCTTGTTCGTGCTGAAATAGCTCAGATGGGATTTACTGAAGCATTAAGTTTCTCATTATGTTCCAGGGAAGATATCAGTACTAAACTAAGACAAAAATTAGATGATATCCCAGCTGTACACATATCTAATCCTAAAACGCTTGATTTTCAAGTTGTCAGAACCAGTTTATTACCAGGATTGTTGAATACATTAGCCAGTAATAGAAGTTTACCATTACCTTTGAAATTATTTGAAGTCCAAGATATTGTACTGAAAAATCCGTCTAAAGATGTTGGCGCTAGCAATCATCGACGTATTTGTGCAGTTTACTACAATAAAAATTCTGGTTTTGAAATCATTCATGGTTTGTTGGATAGATTAATGCCATTGTTAC                                                                                                                                                                                                                              ]
[-] EMBL CD063389             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CAGTTTACTACAATAAAAATTCTGGTTTTGAAATCATTCATGGTTTGTTGGATAGATTAATGCAATTGTTACAAGTTGAATCGATTTTGTCAAAAACAACAAAGAAATCTAATGATCATGAGAGAAACTCGAATCTAAGTTATAGATTGAACGCTACATCCGATCCAACATACTTTGATGGTCGTTGTGCTGATATTATATTGGAGCCTGGTAGTAAAATTATTGGACGATTAGGTATTCTGCATCCTGATGTTATACGAAATTTTGAATTGACAATGCCTTGTTCAGCTTTAG]




>consensus_7602#0
AACTTCAGATATATTGACAGGAGGTCAAAATGCAACTGGTCTAATCTCAGTAAGCATACC
ACCTACAAGGCATGATATTCTGCATGCATGTGATATAGCTGAAGATGTTGGAATTGCATT
CGGTTATGATAATATACCTGAATCGTTACCACAAACCTATTGTGTAGCTGGTAATCAACC
AATCAGTCGATTGACGGATCTTGTTCGTGCTGAAATAGCTCAGATGGGATTTACTGAAGC
ATTAAGTTTCTCATTATGTTCCAGGGAAGATATCGGTACTAAACTAAGACAAAAATTAGA
TGATATCCCAGCTGTACACATATCTAATCCTAAAACGCTTGATTTTCAAGTTGTCAGAAC
CAGTTTATTACCAGGATTGTTGAATACATTAGCCAGTAATAGAAGTTTACCATTACCTTT
GAAATTATTTGAAGTCCAAGATATTGTACTGAAAAATCCGTCTAAAGATGTTGGCGCTAG
CAATCATCGACGTATTTGTGCAGTTTACTACAATAAAAATTCTGGTTTTGAAATCATTCA
TGGTTTGTTGGATAGATTAATGCCATTGTTACAAGTTGAATCGATTTTGTCAAAAACAAC
AAAGAAATCTAATGATCATGAGAGAAACTCGAATCTAAGTTATAGATTGAACGCTACATC
CGATCCAACATACTTTGATGGTCGTTGTGCTGATATTATATTGGAGCCTGGTAGTAAAAT
TATTGGACGATTAGGTATTCTGCATCCTGATGTTATACGAAATTTTGAATTGACAATGCC
TTGTTCAGCTTTAG

consensusID : consensus_7602#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 385
fasta sequence

                              [CAAGAAGAATGGGTAAATGCTTTTACACAGAACAAAGATTAAAAAAAACTATCCTCAGAAGATATATATATAGTCACCCTATTGTTTTTTCTTCAACTATTATTCAGATGTTGGCGCTAGCAATCATCGACGTATTTGCGCAGTTTACTACAATAAAAATTCTGGTTTTGAAATCATTCATGGTTTGTTGGATAGATTAATGCAATTGTTACAAGTTGAGTCGATTTTGTCAAAAACAACAAAGAAATCTAATGATCATGAGAGAAACTCGAATCTAAGTTATAGATTGAACGCTACATCCGGTGAGTTTTATTCTTATTTATTTGAACACAAATATTGGTACAAGGAAGCATCAGATACATATATGCCTCACAAATCTCATTTG]

[-] EMBL CD171000             [CAAGAAGAATGGGTAAATGCTTTTACACAGAACAAAGATTAAAAAAAACTATCCTCAGAAGATATATATATAGTCACCCTATTGTTTTTTCTTCAACTATTATTCAGATGTTGGCGCTAGCAATCATCGACGTATTTGCGCAGTTTACTACAATAAAAATTCTGGTTTTGAAATCATTCATGGTTTGTTGGATAGATTAATGCAATTGTTACAAGTTGAGTCGATTTTGTCAAAAACAACAAAGAAATCTAATGATCATGAGAGAAACTCGAATCTAAGTTATAGATTGAACGCTACATCCGGTGAGTTTTATTCTTATTTATTTGAACACAAATATTGGTACAAGGAAGCATCAGATACATATATGCCTCACAAATCTCATTTG]




>consensus_7602#1
CAAGAAGAATGGGTAAATGCTTTTACACAGAACAAAGATTAAAAAAAACTATCCTCAGAA
GATATATATATAGTCACCCTATTGTTTTTTCTTCAACTATTATTCAGATGTTGGCGCTAG
CAATCATCGACGTATTTGCGCAGTTTACTACAATAAAAATTCTGGTTTTGAAATCATTCA
TGGTTTGTTGGATAGATTAATGCAATTGTTACAAGTTGAGTCGATTTTGTCAAAAACAAC
AAAGAAATCTAATGATCATGAGAGAAACTCGAATCTAAGTTATAGATTGAACGCTACATC
CGGTGAGTTTTATTCTTATTTATTTGAACACAAATATTGGTACAAGGAAGCATCAGATAC
ATATATGCCTCACAAATCTCATTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7602#0      AACTTCAGATATATTGACAGGAGGTCAAAATGCAACTGGTCTAATCTCAGTAAGCATACC 60
consensus_7602#1      ------------------------------------------------------------
                                                                                  

consensus_7602#0      ACCTACAAGGCATGATATTCTGCATGCATGTGATATAGCTGAAGATGTTGGAATTGCATT 120
consensus_7602#1      ------------------------------------------------------------
                                                                                  

consensus_7602#0      CGGTTATGATAATATACCTGAATCGTTACCACAAACCTATTGTGTAGCTGGTAATCAACC 180
consensus_7602#1      ------------------------------------------------------------
                                                                                  

consensus_7602#0      AATCAGTCGATTGACGGATCTTGTTCGTGCTGAAATAGCTCAGATGGGATTTACTGAAGC 240
consensus_7602#1      ------------------------------------------------------------
                                                                                  

consensus_7602#0      ATTAAGTTTCTCATTATGTTCCAGGGAAGATATCGGTACTAAACTAAGACAAAAATTAGA 300
consensus_7602#1      ------------------------------------------------------------
                                                                                  

consensus_7602#0      TGATATCCCAGCTGTACACATATCTAATCCTAAAACGCTTGATTTTCAAGTTGTCAGAAC 360
consensus_7602#1      ------------------------------------------------------------
                                                                                  

consensus_7602#0      CAGTTTATTACCAGGATTGTTGAATACATTAGCCAGTAATAGAAGTTTACCATTAC---- 416
consensus_7602#1      -------CAAGAAGAATGGGTAAATGCTTTTACACAGAACAAAGATTAAAAAAAACTATC 53
                               *  ** ** * * *** * **  *    ** * *  ** *  *  **    

consensus_7602#0      CTTTGAAATTATTTGAA-GTCCAAGATATTGTACTGAAA--AATCCGTCTAAAGATGTTG 473
consensus_7602#1      CTCAGAAGATATATATATAGTCACCCTATTGTTTTTTCTTCAACTATTATTCAGATGTTG 113
                      **  ***  *** *  *    **   ******  *      **    * *  ********

consensus_7602#0      GCGCTAGCAATCATCGACGTATTTGTGCAGTTTACTACAATAAAAATTCTGGTTTTGAAA 533
consensus_7602#1      GCGCTAGCAATCATCGACGTATTTGCGCAGTTTACTACAATAAAAATTCTGGTTTTGAAA 173
                      ************************* **********************************

consensus_7602#0      TCATTCATGGTTTGTTGGATAGATTAATGCCATTGTTACAAGTTGAATCGATTTTGTCAA 593
consensus_7602#1      TCATTCATGGTTTGTTGGATAGATTAATGCAATTGTTACAAGTTGAGTCGATTTTGTCAA 233
                      ****************************** *************** *************

consensus_7602#0      AAACAACAAAGAAATCTAATGATCATGAGAGAAACTCGAATCTAAGTTATAGATTGAACG 653
consensus_7602#1      AAACAACAAAGAAATCTAATGATCATGAGAGAAACTCGAATCTAAGTTATAGATTGAACG 293
                      ************************************************************

consensus_7602#0      CTACATCCGATCCAACATACTTTGATGGTCGTTGTGCTGATATTATATTGGAGCCTGGTA 713
consensus_7602#1      CTACATCCGGTGAGTTTTATTCTTAT--TTATT-TGAACACAA-ATATTGGTACAAGG-- 347
                      ********* *      ** * * **  *  ** **   * *  *******  *  **  

consensus_7602#0      GTAAAATTATTGGACGATTAGGTATTCTGCATCCTGATGTTATACGAAATTTTGAATTGA 773
consensus_7602#1      ----AAGCATCAGATACATATATGCCTCACA----AATCTCATTTG-------------- 385
                          **  **  **    **  *      **     ** * **  *              

consensus_7602#0      CAATGCCTTGTTCAGCTTTAG 794
consensus_7602#1      ---------------------