These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7602#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 794 fasta sequence [AACTTCAGATATATTGACAGGAGGTCAAAATGCAACTGGTCTAATCTCAGTAAGCATACCACCTACAAGGCATGATATTCTGCATGCATGTGATATAGCTGAAGATGTTGGAATTGCATTCGGTTATGATAATATACCTGAATCGTTACCACAAACCTATTGTGTAGCTGGTAATCAACCAATCAGTCGATTGACGGATCTTGTTCGTGCTGAAATAGCTCAGATGGGATTTACTGAAGCATTAAGTTTCTCATTATGTTCCAGGGAAGATATCGGTACTAAACTAAGACAAAAATTAGATGATATCCCAGCTGTACACATATCTAATCCTAAAACGCTTGATTTTCAAGTTGTCAGAACCAGTTTATTACCAGGATTGTTGAATACATTAGCCAGTAATAGAAGTTTACCATTACCTTTGAAATTATTTGAAGTCCAAGATATTGTACTGAAAAATCCGTCTAAAGATGTTGGCGCTAGCAATCATCGACGTATTTGTGCAGTTTACTACAATAAAAATTCTGGTTTTGAAATCATTCATGGTTTGTTGGATAGATTAATGCCATTGTTACAAGTTGAATCGATTTTGTCAAAAACAACAAAGAAATCTAATGATCATGAGAGAAACTCGAATCTAAGTTATAGATTGAACGCTACATCCGATCCAACATACTTTGATGGTCGTTGTGCTGATATTATATTGGAGCCTGGTAGTAAAATTATTGGACGATTAGGTATTCTGCATCCTGATGTTATACGAAATTTTGAATTGACAATGCCTTGTTCAGCTTTAG] [-] EMBL CD097476 [AACTTCAGATATATTGACAGGAGGTCAAAATGCAACTGGTCTAATCTCAGTAAGCATACCACCTACAAGGCATGATATTCTGCATGCATGTGATATAGCTGAAGATGTTGGAATTGCATTCGGTTATGATAATATACCTGAATCGTTACCACAAACCTATTGTGTAGCTGGTAATCAACCAATCAGTCGATTGACGGATCTTGTTCGTGCTGAAATAGCTCAGATGGGATTTACTGAAGCATTAAGTTTCTCATTATGTTCCAGGGAAGATATCGGTACTAAACTAAGACAAAAATTAGATGATATCCCAGCTGTACACATATCTAATCCTAAAACGCTTGATTTTCAAGTTGTCAGAACCAGTTTATTACCAGGATTGTTGAATACATTAGCCAGTAATAGAAGTTTACCATTACCTTTGAAATT ] [-] EMBL CD097477 [AACTTCAGATATATTGACAGGAGGTCAAAATGCAACTGGTCTAATCTCAGTAAGCATACCACCTACAAGGCATGATATTCTGCATGCATGTGATATAGCTGAAGATGTTGGAATTGCATTCGGTTATGATAATATACCTGAATCGTTACCACAAACCTATTGTGTAGCTGGTAATCAACCAATCAGTCGATTGACGGATCTTGTTCGTGCTGAAATAGCTCAGATGGGATTTACTGAAGCATTAAGTTTCTCATTATGTTCCAGGGAAGATATCGGTACTAAACTAAGACAAAAATTAGATGATATCCCAGCTGTACACATATCTAATCCTAAAACGCTTGATTTTCAAGTTGTCAGAACCAGTTTATTACCAGGATTGTTGAATACATTAGCCAGTAATAGAAGTTTACCATTACCTTTGAAATT ] [+] EMBL CD084392 [ gCCTGAATCGTTACCACAAACCTATTGTGTAGCTGGTAATCAACCAATCAGTCGATTGACGGATCTTGTTCGTGCTGAAATAGCTCAGATGGGATTTACTGAAGCATTAAGTTTCTCATTATGTTCCAGGGAAGATATCAGTACTAAACTAAGACAAAAATTAGATGATATCCCAGCTGTACACATATCTAATCCTAAAACGCTTGATTTTCAAGTTGTCAGAACCAGTTTATTACCAGGATTGTTGAATACATTAGCCAGTAATAGAAGTTTACCATTACCTTTGAAATTATTTGAAGTCCAAGATATTGTACTGAAAAATCCGTCTAAAGATGTTGGCGCTAGCAATCATCGACGTATTTGTGCAGTTTACTACAATAAAAATTCTGGTTTTGAAATCATTCATGGTTTGTTGGATAGATTAATGCCATTGTTAC ] [-] EMBL CD063389 [ CAGTTTACTACAATAAAAATTCTGGTTTTGAAATCATTCATGGTTTGTTGGATAGATTAATGCAATTGTTACAAGTTGAATCGATTTTGTCAAAAACAACAAAGAAATCTAATGATCATGAGAGAAACTCGAATCTAAGTTATAGATTGAACGCTACATCCGATCCAACATACTTTGATGGTCGTTGTGCTGATATTATATTGGAGCCTGGTAGTAAAATTATTGGACGATTAGGTATTCTGCATCCTGATGTTATACGAAATTTTGAATTGACAATGCCTTGTTCAGCTTTAG] consensusID : consensus_7602#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence [CAAGAAGAATGGGTAAATGCTTTTACACAGAACAAAGATTAAAAAAAACTATCCTCAGAAGATATATATATAGTCACCCTATTGTTTTTTCTTCAACTATTATTCAGATGTTGGCGCTAGCAATCATCGACGTATTTGCGCAGTTTACTACAATAAAAATTCTGGTTTTGAAATCATTCATGGTTTGTTGGATAGATTAATGCAATTGTTACAAGTTGAGTCGATTTTGTCAAAAACAACAAAGAAATCTAATGATCATGAGAGAAACTCGAATCTAAGTTATAGATTGAACGCTACATCCGGTGAGTTTTATTCTTATTTATTTGAACACAAATATTGGTACAAGGAAGCATCAGATACATATATGCCTCACAAATCTCATTTG] [-] EMBL CD171000 [CAAGAAGAATGGGTAAATGCTTTTACACAGAACAAAGATTAAAAAAAACTATCCTCAGAAGATATATATATAGTCACCCTATTGTTTTTTCTTCAACTATTATTCAGATGTTGGCGCTAGCAATCATCGACGTATTTGCGCAGTTTACTACAATAAAAATTCTGGTTTTGAAATCATTCATGGTTTGTTGGATAGATTAATGCAATTGTTACAAGTTGAGTCGATTTTGTCAAAAACAACAAAGAAATCTAATGATCATGAGAGAAACTCGAATCTAAGTTATAGATTGAACGCTACATCCGGTGAGTTTTATTCTTATTTATTTGAACACAAATATTGGTACAAGGAAGCATCAGATACATATATGCCTCACAAATCTCATTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7602#0 AACTTCAGATATATTGACAGGAGGTCAAAATGCAACTGGTCTAATCTCAGTAAGCATACC 60 consensus_7602#1 ------------------------------------------------------------ consensus_7602#0 ACCTACAAGGCATGATATTCTGCATGCATGTGATATAGCTGAAGATGTTGGAATTGCATT 120 consensus_7602#1 ------------------------------------------------------------ consensus_7602#0 CGGTTATGATAATATACCTGAATCGTTACCACAAACCTATTGTGTAGCTGGTAATCAACC 180 consensus_7602#1 ------------------------------------------------------------ consensus_7602#0 AATCAGTCGATTGACGGATCTTGTTCGTGCTGAAATAGCTCAGATGGGATTTACTGAAGC 240 consensus_7602#1 ------------------------------------------------------------ consensus_7602#0 ATTAAGTTTCTCATTATGTTCCAGGGAAGATATCGGTACTAAACTAAGACAAAAATTAGA 300 consensus_7602#1 ------------------------------------------------------------ consensus_7602#0 TGATATCCCAGCTGTACACATATCTAATCCTAAAACGCTTGATTTTCAAGTTGTCAGAAC 360 consensus_7602#1 ------------------------------------------------------------ consensus_7602#0 CAGTTTATTACCAGGATTGTTGAATACATTAGCCAGTAATAGAAGTTTACCATTAC---- 416 consensus_7602#1 -------CAAGAAGAATGGGTAAATGCTTTTACACAGAACAAAGATTAAAAAAAACTATC 53 * ** ** * * *** * ** * ** * * ** * * ** consensus_7602#0 CTTTGAAATTATTTGAA-GTCCAAGATATTGTACTGAAA--AATCCGTCTAAAGATGTTG 473 consensus_7602#1 CTCAGAAGATATATATATAGTCACCCTATTGTTTTTTCTTCAACTATTATTCAGATGTTG 113 ** *** *** * * ** ****** * ** * * ******** consensus_7602#0 GCGCTAGCAATCATCGACGTATTTGTGCAGTTTACTACAATAAAAATTCTGGTTTTGAAA 533 consensus_7602#1 GCGCTAGCAATCATCGACGTATTTGCGCAGTTTACTACAATAAAAATTCTGGTTTTGAAA 173 ************************* ********************************** consensus_7602#0 TCATTCATGGTTTGTTGGATAGATTAATGCCATTGTTACAAGTTGAATCGATTTTGTCAA 593 consensus_7602#1 TCATTCATGGTTTGTTGGATAGATTAATGCAATTGTTACAAGTTGAGTCGATTTTGTCAA 233 ****************************** *************** ************* consensus_7602#0 AAACAACAAAGAAATCTAATGATCATGAGAGAAACTCGAATCTAAGTTATAGATTGAACG 653 consensus_7602#1 AAACAACAAAGAAATCTAATGATCATGAGAGAAACTCGAATCTAAGTTATAGATTGAACG 293 ************************************************************ consensus_7602#0 CTACATCCGATCCAACATACTTTGATGGTCGTTGTGCTGATATTATATTGGAGCCTGGTA 713 consensus_7602#1 CTACATCCGGTGAGTTTTATTCTTAT--TTATT-TGAACACAA-ATATTGGTACAAGG-- 347 ********* * ** * * ** * ** ** * * ******* * ** consensus_7602#0 GTAAAATTATTGGACGATTAGGTATTCTGCATCCTGATGTTATACGAAATTTTGAATTGA 773 consensus_7602#1 ----AAGCATCAGATACATATATGCCTCACA----AATCTCATTTG-------------- 385 ** ** ** ** * ** ** * ** * consensus_7602#0 CAATGCCTTGTTCAGCTTTAG 794 consensus_7602#1 --------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||