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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7605#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1544 fasta sequence
[CATATCCGATGAGAATGTACTACCCACGTCACAGTTGTTGAAATCTTTTATGGATCAAATGCGCTATTTTCAAAAAGGAGATTTAGAGGCATCTATTCGACCAGTTACAATGTGGATAGTTATCAGTGATTTGGATCAAATTTTCGATTCCAATTTACCTGAAGAACATCGTCTTCAACTTCAAATGGATTGCAATTTAGCTCTTAATGCATTGACATTTCTACGTAGCGCTCATTCTACAAAAGGTTTACGTATTGGTTTCGTATATAACCCATTAAAAATAATTAAAGAAGAAAAGAAATCAACTGATCATTGGTTAACACGTGTACTTTATCTTGTTGGTAATCCAATCAATATAACACTACCATTATCTAATCAACTGAATAATGAAATAATAGCAAAACGAAAATATGCTGAACAAATGTCAGGACGTAATTTTGCTATACGTCTTATCAAGGAAATATTGGAATCAATCAAAACTTCTAAACCTATGAAATCTTTAGAAGAACTTTTAGTTTCAGGCATGGATTCC-AACAGATACATGATGCTATTCAATTATTTGATAGAAATAATTTTATGCAAATGCACTCAACTATTGCCTGTCAGATTATTGGTCTGAAACCCGGTGAACGAGCTGTTATTGTGAATGGTAAAATAGTCGGTCCATTCGAACCCTTTGAAGAGTTTCTGTCTGATGATTTTCGTTTAGCAGAACGTTTAGCATTAGATAATGGTGCTAAAGAGCTTGGGGATAAACTGGAAAAAATTTTAGGCACAACAGCTGGAGCTCCTGATATTATCTCTGAACTCACTTGGCAATTATCTTCAGTGCTCCAATCAGGTATTGAAGCTACCAGTTCAGTCATATCTGAAACGTCTTCCGTAGATGGGATCTCGGACAAAAGTCAAAATGGACATAGAATACTTCTTCATGGTGTATCATACAATCATTCAGGTTTCATTATTCACGGAAATAAAAATGAACCAAATTTTGAATTAGTCGCTATCATAGATCCGGCTTCTCGTGATGCTCAACGTCTATCTCATATACTGATTGTACTACAGCACTCTTTGCCATGTACTGTAAAAGTTTTATTCAATCCATCACCTTCGTTATCTGAACTACCAGTGAAAAGTTTTTATCGTTTCGTATGGGA-ACCATCATTGTTTCCAGAAAATGAATCTATACTCAATCCATCTGTTATTGTACCTCGTGCTTATTTTACTCACTTACCTGGTCAATCTTTGCTTACATTGGGAATGGATGAACCACATGGTTGGATGGTTGCTGCTATTAAAGCTGTACAAGATCTAGATAATCTACGCCTAGTTGATTATCACTCTACACAACATTTAGTGGAAGCTGTTTTCGAATTAGAATATCTTTTACTTGAAGGTCATTGTATGGAAGAGGGGAGTATGAAACCTCCACGTGGACTTCAATTTACGCTTGGTCCCACACCAACTACCATTGAATATGATACAATCGTTATGGCTAATTTGGGTTACTTTCAACTCAAAGCCAATCCTGGCGCTTGGCATTT]
[+] EMBL CD191871 [CATATCCGATGAGAATGTACTACCCACGTCACAGTTGTTGAAATCTTTTATGGATCAAATGCGCTATTTTCAAAAAGGAGATTTAGAGGCATCTATTCGACCAGTTACAATGTGGATAGTTATCAGTGATTTGGATCAAATTTTCGATTCCAATTTACCTGAAGAACATCGTCTTCAACTTCAAATGGATTGCAATTTAGCTCTTAATGCATTGACATTTCTACGTAGCGCTCATTCTACAAAAGGTTTACGTATTGGTTTCGTATATAACCCATTAAAAATAATTAAAGAAGAAAAGAAATCAACTGATCATTGGTTAACACGTGTACTTTATCTTGTTGGTAATCCAATCAATATAACACTACCATTATCTAATCAACTGAATAATGAAATAATAGCAAAACGAAAATATGCTGAACAAATGTCAGGACGTAATTTTGCTATACGTCTTATCAAGGAAATATTGGAATCAATCAAAACTTCTAAACCTATGAAATCTTTAGAAGAACTTTTAGTTTCAGGCATGGATTCC AACAGATACATGATGCTATTCAATTATTTGATAGAAATAATTTTATGCAAATGCACTCAACTATTGCCTGTCAAATTATTGGTCT ]
[+] EMBL CD169823 [ TCTAATCAACTGAATAATGAAATAATAGCAAAACGAAAATATGCTGAACAAATGTCAGGACGTAATTTTGCTATACGTCTTATCAAGGAAATATTGGAATCAATCAAAACTTCTAAACCTATGAAATCTTTAGAAGAACTTTTAGTTTCAGGCATGGATTCCAAACAGATACATGATGCTATTCAATTATTTGATAGAAATAATTTTAAGCAAATGCACTCAACTATTGCCTGTCAGATTATTGGTCTGAAACCCGGTGAACGAGCTGTTATTGTGAATGGTAAAATAGTCGGTCCATTCGAACCCTTTGAAGAGTTTCTGTCTGATGATTTTCGTTTAGCAGAACGTTTAGC ]
[+] EMBL AI976250 [ ATTGCCTGTCAGATTATTGGTCTGAAACCCGGTGAACGAGCTGTTGTTGTGAATGGTAAAATAGTCGGTCCATTCGAACCATTTGAAGAGTTTCTGTCTGATGATTTTCGTTTAGCAGAACGTTTAGCATTAGATAATGGTGCTAAAGAGCTTGGGGATAAACTGGAAAAAATTTTAGGCACAACAGCTGGAGCTCCTGATATTATCTCTGAACTCACTTGGCAATTATCTTCAGTGCTCCAATCAGGTATTGAAGCTACCAGTTCAGTCATATCTGAAACGTCTTCCGTAGATGGGATCTCGGACAAAAGTCAAAATGGACATAGAATACTTCTTCATGGTGTATCATACAATCATTCAGGTTTCATTATTCACGGAAATAAAAATGAACCAAATTTTGAATTAGTCGCTATCATAGATCCGGCTTCTCGTGATGCTCAACGTCTATCTCATATACTGATTGTACTACAGCACTCTTTGCCATGTACTGTAAAAGTTTTATTCAATCCATCACCTTCGTTATCTGAACTACCAGTGAAAAGTTTTTATCGTTTCGTATGGGA ACCATCATTGTTTCCAGAAAATGAATCTATACTCAATCCATCTGTTATTGTACCTCGTGCTTATTTTACTCACTTACCTGGTCAATCTTTGCTTACATTGGGAA ]
[+] EMBL CD115895 [ ATTGTACTACAGCACTCTTTGCCATGTACTGTAAAAGTTTTATTCAATCCATCACCTTCGTTATCTGAACTACCAGTGAAAAGTTTTTATCGTTTCGTATGGTATTCTATCATTGTTTCCAGAAAATGAATCTATACTCAATCCATCTGTTATTGTACCTCGTGCTTATTTTACTCACTTACCTGGTCAATCTTTGCTTACATTGGGAATGGATGAACCACATGGTTGGATGGTTGCTGCTATTAAAGCTGTACAAGATCTAGATAATCTACGCCTAGTTGATTATCACTCTACACAACATTTAGTGGAAGCTGTTTTCGAATTAGAATATCTTTTACTTGAAGGTCATTGTATGGAAGAGGGGAGTATGAAACCTCCACGTGGACTTCAATTTACGCTTGGTCCCACACCAACTACCATTGAATATGATACAATCGTTATGGCTAATTTGGGTTACTTTCAACTCAAAGCCAATCCTGGCGCTTGGCATTT]
consensusID : consensus_7605#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 740 fasta sequence
[GAGGCCAANAATTCGGCACGAGGTCCAATCCATCTATTATTGTACCTCGTGCTTATTTTACTCACTTACCTGGTCAATCTTTGCTTACATTGGGAATGGATGAACCACATGGTTGGATGGTTGCTGCTATTAAAGCTGTACAAGATCTAGATAATCTACGCCTAGTTGATTATCACTCTACACAACATTTAGTGGAAGCTGTTTTCGAATTAGAATATCTGTTACTTGAAGGTCATTGTATGGAAGAGGGGAGTATGAAACCTCCACGTGGACTTCAATTTACGCTTGGTCCCACACCAACTACTATTGAATATGATACAATTGTTATGGCTAATTTGGGTTACTTTCAACTCAAAGCCAATCCTGGCGCTTGGCATTTAAATATTCGTGCGGGAAAGTCACAAAAACTTTATGAAATATCCGGCCAAGAACATACTGATACATCTGTTAATTCTAAAGAAATTATCACATTGATTAGTAATTTCCGTTCTAAAATCATTGAAGTCTCTGTTAATAAACGTGCCGAATTTGCCAGTGAAAGTATGTTAGATGATAGTTCTGAAGAATCAAATAATTGGTTAAATAAACATTCAGAAGTTTGGTCCACATTATCGAATTATGCTGATGAATATTGTCCTTCTTGGCTTAGTGGTCTAAAACATTCAATTGCATCTCATTTGCCTTGGCATANATGTGCTTCANATCAAGAACTATCACATTNTCTCTGTTGCCTCTGGTCA]
[+] EMBL CD079710 [GAGGCCAANAATTCGGCACGAGGTCCAATCCATCTATTATTGTACCTCGTGCTTATTTTACTCACTTACCTGGTCAATCTTTGCTTACATTGGGAATGGATGAACCACATGGTTGGATGGTTGCTGCTATTAAAGCTGTACAAGATCTAGATAATCTACGCCTAGTTGATTATCACTCTACACAACATTTAGTGGAAGCTGTTTTCGAATTAGAATATCTGTTACTTGAAGGTCATTGTATGGAAGAGGGGAGTATGAAACCTCCACGTGGACTTCAATTTACGCTTGGTCCCACACCAACTACTATTGAATATGATACAATTGTTATGGCTAATTTGGGTTACTTTCAACTCAAAGCCAATCCTGGCGCTTGGCATTTAAATATTCGTGCGGGAAAGTCACAAAAACTTTATGAAATATCCGGCCAAGAACATACTGATACATCTGTTAATTCTAAAGAAATTATCACATTGATTAGTAATTTCCGTTCTAAAATCATTGAAGTCTCTGTTAATAAACGTGCCGAATTTGCCAGTGAAAGTATGTTAGATGATAGTTCTGAAGAATCAAATAATTGGTTAAATAAACATTCAGAAGTTTGGTCCACATTATCGAATTATGCTGATGAATATTGTCCTTCTTGGCTTAGTGGTCTAAAACATTCAATTGCATCTCATTTGCCTTGGCATANATGTGCTTCANATCAAGAACTATCACATTNTCTCTGTTGCCTCTGGTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7605#0 CATATCCGATGAGAATGTACTACCCACGTCACAGTTGTTGAAATCTTTTATGGATCAAAT 60
consensus_7605#1 ------------------------------------------------------------
consensus_7605#0 GCGCTATTTTCAAAAAGGAGATTTAGAGGCATCTATTCGACCAGTTACAATGTGGATAGT 120
consensus_7605#1 ------------------------------------------------------------
consensus_7605#0 TATCAGTGATTTGGATCAAATTTTCGATTCCAATTTACCTGAAGAACATCGTCTTCAACT 180
consensus_7605#1 -------------------------GAGGCCAANAATTCGGCACGAGGTCCAATCCATCT 35
** **** * * * * ** * ** **
consensus_7605#0 TCAAATGGATTGCAATTTAGCTCTTAATGCATTGACATTTCTACGTAGCGCTCATTCTAC 240
consensus_7605#1 ATTATTGTACCTCGTGCTTATTTT--ACTCACTTACCTGGTCAATCTTTGCTTACATTGG 93
* ** * * * * * * ** * ** * * *** * *
consensus_7605#0 AAAAGGTTTACGTAT-TGGTTTCGTATATAAC-CCATTAAAAATAATTAAAGAAGAAAAG 298
consensus_7605#1 GAATGGATGAACCACATGGTTGGATGGTTGCTGCTATTAAAGCTG--TACAAGATCTAGA 151
** ** * * * ***** * * * ****** * ** * * *
consensus_7605#0 AAATCAACTGATCATTGGTTAACACG-TGTACTTTATCTTGTTGGTAATCCAATCAATAT 357
consensus_7605#1 TAATCTACGCCTAGTTGATTATCACTCTACACAACATTTAGTGGAAGCTGTTTTCGAATT 211
**** ** * *** *** *** * ** ** * ** * * ** * *
consensus_7605#0 AACACTACCATTATCTAATCAACTGAATAATGAAATAATAGCAAAACGAAAATATGCTGA 417
consensus_7605#1 AGAATATCTGTTACTTGA------AGGTCATTGTAT----GGAAGAGGGGAGTATG--AA 259
* * * *** * * * ** ** * ** * * * **** *
consensus_7605#0 ACAAATGTCAGGACGTAATTTTGCTATACGTCTTAT-CAAGGAAATATTGGAATCAATCA 476
consensus_7605#1 ACCTCCACGTGGACTTCAATTTACGCTTGGTCCCACACCAACTACTATTGAATATGAT-A 318
** **** * * *** * * *** * * * * ***** * ** *
consensus_7605#0 AAACTTCTAAACCTATGAAATCTTTAGAAGAACTTTTAGTTTCAGGCATGGATTCCAACA 536
consensus_7605#1 CAATTGTTATGGCTAA-------TTTGGGTTACTTTCAACTCAAAGCC--AATCCTGGCG 369
** * ** *** ** * ***** * * * ** ** * *
consensus_7605#0 GATA-CATGATGCTATTCAATTATTTGA-TAGAAATAATTTTATGCAA-ATGCACTCAAC 593
consensus_7605#1 CTTGGCATTTAAATATTCGTGCGGGAAAGTCACAAAAACTTTATGAAATATCCGGCCAAG 429
* *** ***** * * ** ** ****** ** ** * ***
consensus_7605#0 TATTGCCTGTCAGATTATTGGTCTGAAACCCGGTGAACGAGCTGTTATTGTGAATGGTAA 653
consensus_7605#1 AACATACTGATACATC-----TGTTAATTC---TAAAGAAATTATCACATTGATTAGTA- 480
* *** * ** * * ** * * ** * * * * *** * ***
consensus_7605#0 AATAGTCGGTCCATTCGAACCCTTTGAAGAGTTT-CTGTCTGATGATTTTCGTTTAGCAG 712
consensus_7605#1 -ATTTCCGTTCTA----AAATCATTGAAGTCTCTGTTAATAAACGTGCCGAATTTGCCAG 535
** ** ** * ** * ****** * * * * * *** ***
consensus_7605#0 AACGTTTAGCATTAGATAATGGTGCTAAAGAGCTTGGGGATAAACTGGAAAAAATTTTAG 772
consensus_7605#1 TGAAAGTA-TGTTAGATGATAGTTCTGAAGAATCAAATAATTGGTTAAATAAACATTCAG 594
** ****** ** ** ** **** ** * * *** ** **
consensus_7605#0 GCACAACAGCTGGAGCTCCTGATATTATCTCTGAACTCACTTGGCAATTATCTTCAGTGC 832
consensus_7605#1 A------AGTTTGGTCC----ACATTATC---GAATTATGCTGATGAATATTGTCC-TTC 640
** * * * * ****** *** * ** * *** ** * *
consensus_7605#0 TCCAATCAGGTATTGAAGCTACCAGTTCAGTCATATCTGAAACGTCTTC-CGTAGATGGG 891
consensus_7605#1 TTGGCTTAGTGGTCTAAAACA----TTCAATTGCATCTCATTTGCCTTGGCATANATGTG 696
* * ** * ** * **** * **** * * *** * ** *** *
consensus_7605#0 ATCTCGGACAAAAGTCAAAATGGACATAGAATACTTCTTCATGGTGTATCATACAATCAT 951
consensus_7605#1 CTTCANATCAAGAACTATCAC--ATTNTCTCTGTTGCCTC-TGGTCA------------- 740
* *** * * * * * * * ** ****
consensus_7605#0 TCAGGTTTCATTATTCACGGAAATAAAAATGAACCAAATTTTGAATTAGTCGCTATCATA 1011
consensus_7605#1 ------------------------------------------------------------
consensus_7605#0 GATCCGGCTTCTCGTGATGCTCAACGTCTATCTCATATACTGATTGTACTACAGCACTCT 1071
consensus_7605#1 ------------------------------------------------------------
consensus_7605#0 TTGCCATGTACTGTAAAAGTTTTATTCAATCCATCACCTTCGTTATCTGAACTACCAGTG 1131
consensus_7605#1 ------------------------------------------------------------
consensus_7605#0 AAAAGTTTTTATCGTTTCGTATGGGAACCATCATTGTTTCCAGAAAATGAATCTATACTC 1191
consensus_7605#1 ------------------------------------------------------------
consensus_7605#0 AATCCATCTGTTATTGTACCTCGTGCTTATTTTACTCACTTACCTGGTCAATCTTTGCTT 1251
consensus_7605#1 ------------------------------------------------------------
consensus_7605#0 ACATTGGGAATGGATGAACCACATGGTTGGATGGTTGCTGCTATTAAAGCTGTACAAGAT 1311
consensus_7605#1 ------------------------------------------------------------
consensus_7605#0 CTAGATAATCTACGCCTAGTTGATTATCACTCTACACAACATTTAGTGGAAGCTGTTTTC 1371
consensus_7605#1 ------------------------------------------------------------
consensus_7605#0 GAATTAGAATATCTTTTACTTGAAGGTCATTGTATGGAAGAGGGGAGTATGAAACCTCCA 1431
consensus_7605#1 ------------------------------------------------------------
consensus_7605#0 CGTGGACTTCAATTTACGCTTGGTCCCACACCAACTACCATTGAATATGATACAATCGTT 1491
consensus_7605#1 ------------------------------------------------------------
consensus_7605#0 ATGGCTAATTTGGGTTACTTTCAACTCAAAGCCAATCCTGGCGCTTGGCATTT 1544
consensus_7605#1 -----------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||