These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7607#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 528 fasta sequence [CCCAGAATCGGCACGAGGGGCTATTGGGGGATTTCTCTCATCTGTTGCCCTCATAATCCTTCTAAAAAAAATCTGGAAGACTAAGTCATGTGCTGGACTTTCAGGAAAATCTCAACTTCTTTTTGCGGTTGTGTTTACATCACGTTACATGGATTTGTTCTTCAATTTCATTTCACTGTATAACACCATCATGAAGCTTTTCTTTATCATTTGCTCTTGTGCGACCGTCTACCTCATGTATTTCAAATTCAAGGCTACCTACGATTCTAATCATGATACATTTAATATGTATTTGTTACTGATCCCCAGTCTGCTACTAGGTTTAGTGGCCAATTACGAATTTTCTTTATATGAGGTACTATGGGCTTTCTCAATTTACTTGGAATCGGTTGCTATCATGCCTCAGTTGTTTATGATTAGCAAAACTGGCGAAGCTGAAACAATCACTTCTCACTACTTATTTGCGTTAGGATCATACCGTGCGTTATATTTGTTCAACTGGATATACCGTTATGTTTTCGATGATTA] [+] EMBL CD083542 [CCCAGAATCGGCACGAGGGGCTATTGGGGGATTTCTCTCATCTGTTGCCCTCATAATCCTTCTAAAAAAAATCTGGAAGACTAAGTCATGTGCTGGACTTTCAGGAAAATCTCAACTTCTTTTTGCGGTTGTGTTTACATCACGTTACATGGATTTGTTCTTCAATTTCATTTCACTGTATAACACCATCATGAAGCTTTTCTTTATCATTTGCTCTTGTGCGACCGTCTACCTCATGTATTTCAAATTCAAGGCTACCTACGATTCTAATCATGATACATTTAATATGTATTTGTTACTGATCCCCAGTCTGCTACTAGGTTTAGTGGCCAATTACGAATTTTCTTTATATGAGGTACTATGGGCTTTCTCAATTTACTTGGAATCGGTTGCTATCATGCCTCAGTTGTTTATGATTAGCAAAACTGGCGAAGCTGAAACAATCACTTCTCACTACTTATTTGCGTTAGGATCATACCGTGCGTTATATTTGTTCAACTGGATATACCGTTATGTTTTCGATGATTA] [+] EMBL CD158110 [ AAAAAAAATCTGGAAGACTAAGTCATGTGCTGGACTTTCAGGAAAATCTCAACTTCTTTTTGCGGTTGTGTTTACATCACGTTACATGGATTTGTTCTTCAATTTCATTTCACTGTATAACACCATCATGAAGCTTTTCTTTATCATTTGCTCTTGTGCGACCGTCTACCTCATGTATTTCAAATTCAAGGCTACCTACGATTCTAATCATGATACATTTAATATGTATTTGTTACTGATCCCCAGTCTGCTACTAGGTTTAGTGGCCAATTACGAATTTTCTTTA ] [+] EMBL CD077509 [ CTTTTTGCGGTTGTGTTTACATCACGTTACATGGATTTGTTCTTCAATTTCATTTCACTGTATAACACCATCATGAAGCTTTTCTTTATCATTTGCTCTTGTGCGACCGTCTACCTCATGTATTTCAAATTCAAGGCTACCTACGATTCTAATCATGATACATTTAATATGTATTTGTTACTGATCCCCAGTCTGCTACTAGGTTTAGTGGCCAATTAC ] consensusID : consensus_7607#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence [TAAACAGTTATTAAAGTATTATGATTAGCACTTTTTTATTAAAAAAAGGAAAAAAAAAGAAAAATTAATATGAACACAAATGACATCATGAAGGGGGGGGGGATTTCTCTCATCTTGTTGCCCTCATAATCCTTCTAAAAAAAAATCTGGAAGACTAAGTCATGTGCTGGACTTTCAGGAAAATCTCAACTTCTTTTTGCGGTTGTGTTTACATCACGTTACATGGATTTGTTCTTCAATTTCATTTCACTGTATAACACCATCACGAAGCTTTTCTTTATCATTTGCTCTTGTGCGACCGTCTACCTCATGTATTTCAAATTCAAGGCTACCTACGATTCTAATCATGATACATTTAATATGTATTTGTTAATGATCCCATAT] [-] EMBL CD140909 [TAAACAGTTATTAAAGTATTATGATTAGCACTTTTTTATTAAAAAAAGGAAAAAAAAAGAAAAATTAATATGAACACAAATGACATCATGAAGGGGGGGGGGATTTCTCTCATCTTGTTGCCCTCATAATCCTTCTAAAAAAAAATCTGGAAGACTAAGTCATGTGCTGGACTTTCAGGAAAATCTCAACTTCTTTTTGCGGTTGTGTTTACATCACGTTACATGGATTTGTTCTTCAATTTCATTTCACTGTATAACACCATCACGAAGCTTTTCTTTATCATTTGCTCTTGTGCGACCGTCTACCTCATGTATTTCAAATTCAAGGCTACCTACGATTCTAATCATGATACATTTAATATGTATTTGTTAATGATCCCATAT] consensusID : consensus_7607#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 223 fasta sequence [AGTTCGGTACAAAAAGGCATGAATATATTCAGGCTATTGGGGGATTTCTCTCATCTTGTTGCCCTCATAATCCTGCTAAAAAAAATCTGGAAGACTAAGTCATGTGCTGGACTTTCAGGAAAATCTCAACTTCTTTTTGCGGTTGTGTTTACATCACGTTACATGGATTTGTTCTTCAATTTCATTTCACTGTATAACACCATCATGAAGCTTTTCTTTATCA] [+] EMBL CD096585 [AGTTCGGTACAAAAAGGCATGAATATATTCAGGCTATTGGGGGATTTCTCTCATCTTGTTGCCCTCATAATCCTGCTAAAAAAAATCTGGAAGACTAAGTCATGTGCTGGACTTTCAGGAAAATCTCAACTTCTTTTTGCGGTTGTGTTTACATCACGTTACATGGATTTGTTCTTCAATTTCATTTCACTGTATAACACCATCATGAAGCTTTTCTTTATCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7607#0 ------------------------------------------------------------ consensus_7607#2 --------------------------------------------------------AGTT 4 consensus_7607#1 TAAACAGTTATTAAAGTATTATGATTAGCACTTTTTTATTAAAAAAAGGAAAAAAAAAGA 60 consensus_7607#0 ---CCCAGAATCGGCACGAG---------GGGCTATTGGGGGATTTCTCTCATCT-GTTG 47 consensus_7607#2 CGGTACAAAAA-GGCATGAATATATTC--AGGCTATTGGGGGATTTCTCTCATCTTGTTG 61 consensus_7607#1 AAAATTAATATGAACACAAATGACATCATGAAGGGGGGGGGGATTTCTCTCATCTTGTTG 120 * * ** * ****************** **** consensus_7607#0 CCCTCATAATCCTTCTAAAAAAAA-TCTGGAAGACTAAGTCATGTGCTGGACTTTCAGGA 106 consensus_7607#2 CCCTCATAATCCTGCTAAAAAAAA-TCTGGAAGACTAAGTCATGTGCTGGACTTTCAGGA 120 consensus_7607#1 CCCTCATAATCCTTCTAAAAAAAAATCTGGAAGACTAAGTCATGTGCTGGACTTTCAGGA 180 ************* ********** *********************************** consensus_7607#0 AAATCTCAACTTCTTTTTGCGGTTGTGTTTACATCACGTTACATGGATTTGTTCTTCAAT 166 consensus_7607#2 AAATCTCAACTTCTTTTTGCGGTTGTGTTTACATCACGTTACATGGATTTGTTCTTCAAT 180 consensus_7607#1 AAATCTCAACTTCTTTTTGCGGTTGTGTTTACATCACGTTACATGGATTTGTTCTTCAAT 240 ************************************************************ consensus_7607#0 TTCATTTCACTGTATAACACCATCATGAAGCTTTTCTTTATCATTTGCTCTTGTGCGACC 226 consensus_7607#2 TTCATTTCACTGTATAACACCATCATGAAGCTTTTCTTTATCA----------------- 223 consensus_7607#1 TTCATTTCACTGTATAACACCATCACGAAGCTTTTCTTTATCATTTGCTCTTGTGCGACC 300 ************************* ***************** consensus_7607#0 GTCTACCTCATGTATTTCAAATTCAAGGCTACCTACGATTCTAATCATGATACATTTAAT 286 consensus_7607#2 ------------------------------------------------------------ consensus_7607#1 GTCTACCTCATGTATTTCAAATTCAAGGCTACCTACGATTCTAATCATGATACATTTAAT 360 consensus_7607#0 ATGTATTTGTTACTGATCCCCAGTCTGCTACTAGGTTTAGTGGCCAATTACGAATTTTCT 346 consensus_7607#2 ------------------------------------------------------------ consensus_7607#1 ATGTATTTGTTAATGATCCCATAT------------------------------------ 384 consensus_7607#0 TTATATGAGGTACTATGGGCTTTCTCAATTTACTTGGAATCGGTTGCTATCATGCCTCAG 406 consensus_7607#2 ------------------------------------------------------------ consensus_7607#1 ------------------------------------------------------------ consensus_7607#0 TTGTTTATGATTAGCAAAACTGGCGAAGCTGAAACAATCACTTCTCACTACTTATTTGCG 466 consensus_7607#2 ------------------------------------------------------------ consensus_7607#1 ------------------------------------------------------------ consensus_7607#0 TTAGGATCATACCGTGCGTTATATTTGTTCAACTGGATATACCGTTATGTTTTCGATGAT 526 consensus_7607#2 ------------------------------------------------------------ consensus_7607#1 ------------------------------------------------------------ consensus_7607#0 TA 528 consensus_7607#2 -- consensus_7607#1 -- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||