cluster # 7609

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Schistosoma mansoni
cluster # 7609 cluster # 7609 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7609#0 length = 700 sequences # 1

consensus_7609#1 length = 619 sequences # 4

consensusID : consensus_7609#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 700
fasta sequence

                              [GTTATTCGATTACCTGAAAAATTGCTGTGAACAAGTTAGGTGATAATGTTTGGACAATGAAAGTGATTCACCTCAGAGTTCTTAGTAGCTGCTTTACTGAATGGTCGACATGAATTCATCTTTTTTTACAATACGCTTGCAACGAATGAAGATGTAAAGGACTCACTATCGAATTTGGCTGATGATTTGGGATGCATTCTGTTTGACCATTTACGACAAGTAGATGCGGACTTCAATTTTATGTTACCTGTCACTGCGACATACGATCTAGACACTCGACTCATGTTGATGCTTGACAGGAGTATGATGCCTGAGTCCAACACGGACGATTCCACACGTGTTAAGACTGCGTGGGTGACGTTAGCCGCAATGGCCTCTGCTTACATCTTCAAAAATGTTGGAGAATCGGTTTCCAAACCTCTTCGAAAATGGCTGGCGAATGCTGCCAGTGCTGCGATTCTCGCAGGACTACTTGCAGAAGTTCCCGAGTCGTCGGAACAGATGAACAAACCACTTCTGATGGACACGCGCCTGTCGAAATTGTCTCCACACCTGACAGAGTAGTGGAGAATCGTCAAGATGGTGCGTTGTACTGTGCCGTTGANAACCAAAAGACAATGTTGCCAACAGTCGTGAAATGAAGGATGTGAACGATGTTGGAATGACAGATGCATGTATTCGAATGATGAATGCTGCTGGT]

[+] EMBL CD188622             [GTTATTCGATTACCTGAAAAATTGCTGTGAACAAGTTAGGTGATAATGTTTGGACAATGAAAGTGATTCACCTCAGAGTTCTTAGTAGCTGCTTTACTGAATGGTCGACATGAATTCATCTTTTTTTACAATACGCTTGCAACGAATGAAGATGTAAAGGACTCACTATCGAATTTGGCTGATGATTTGGGATGCATTCTGTTTGACCATTTACGACAAGTAGATGCGGACTTCAATTTTATGTTACCTGTCACTGCGACATACGATCTAGACACTCGACTCATGTTGATGCTTGACAGGAGTATGATGCCTGAGTCCAACACGGACGATTCCACACGTGTTAAGACTGCGTGGGTGACGTTAGCCGCAATGGCCTCTGCTTACATCTTCAAAAATGTTGGAGAATCGGTTTCCAAACCTCTTCGAAAATGGCTGGCGAATGCTGCCAGTGCTGCGATTCTCGCAGGACTACTTGCAGAAGTTCCCGAGTCGTCGGAACAGATGAACAAACCACTTCTGATGGACACGCGCCTGTCGAAATTGTCTCCACACCTGACAGAGTAGTGGAGAATCGTCAAGATGGTGCGTTGTACTGTGCCGTTGANAACCAAAAGACAATGTTGCCAACAGTCGTGAAATGAAGGATGTGAACGATGTTGGAATGACAGATGCATGTATTCGAATGATGAATGCTGCTGGT]




>consensus_7609#0
GTTATTCGATTACCTGAAAAATTGCTGTGAACAAGTTAGGTGATAATGTTTGGACAATGA
AAGTGATTCACCTCAGAGTTCTTAGTAGCTGCTTTACTGAATGGTCGACATGAATTCATC
TTTTTTTACAATACGCTTGCAACGAATGAAGATGTAAAGGACTCACTATCGAATTTGGCT
GATGATTTGGGATGCATTCTGTTTGACCATTTACGACAAGTAGATGCGGACTTCAATTTT
ATGTTACCTGTCACTGCGACATACGATCTAGACACTCGACTCATGTTGATGCTTGACAGG
AGTATGATGCCTGAGTCCAACACGGACGATTCCACACGTGTTAAGACTGCGTGGGTGACG
TTAGCCGCAATGGCCTCTGCTTACATCTTCAAAAATGTTGGAGAATCGGTTTCCAAACCT
CTTCGAAAATGGCTGGCGAATGCTGCCAGTGCTGCGATTCTCGCAGGACTACTTGCAGAA
GTTCCCGAGTCGTCGGAACAGATGAACAAACCACTTCTGATGGACACGCGCCTGTCGAAA
TTGTCTCCACACCTGACAGAGTAGTGGAGAATCGTCAAGATGGTGCGTTGTACTGTGCCG
TTGANAACCAAAAGACAATGTTGCCAACAGTCGTGAAATGAAGGATGTGAACGATGTTGG
AATGACAGATGCATGTATTCGAATGATGAATGCTGCTGGT

consensusID : consensus_7609#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 619
fasta sequence

                              [AAAATGGCTGGCGAATGCTGCCAGTGCTGCGATTCTCGCAGGACTACTTGCAGAAGTTCCCGAGTCGTCGGATTCAAATGAACGAACTACTTCTGATGGAGACGCGCCTGTCGAAAATGTCTCCACACCTGACAGAGTAGTGGAGAATCGTCAAGATGGTGCGTGGTACTATGGCCGTTGGACCGTTGACAATGTTGCCAACAGTCGTGAAATGATGGATGTGATCGATGTTGGAATGACAGATGCATGTATTCGAGTGATGATTGCTGCAGTTGTTAATTATTTCCAGGAGAACAGATTCGCACCGTGTGGGTTGTTGAGAGACAGTTATGCAAGTGAGATACTGAGAAGTGACCTAATGGATAAGCATGGATTAACAGACAAACGTGATAAAATTGAAGCGATGCGTATCACTGGTTATTGGGTCTCGAGACTCTATGTGTTTCATATGGCGACGAAGCATCGTGATTTGGAACATCCAATCAGACCCATAAATAACGTTGGTCTGGTGCGTCCTCTGAAACTAGATATCTGTCAGTATTTCGAGGACTTGACAGCTAGATTTATCCGTACACGAATCGCGCATCAGATTGCCAGTCGAATGGTCCGATCTGTGTGT]

[+] EMBL CD139790             [AAAATGGCTGGCGAATGCTGCCAGTGCTGCGATTCTCGCAGGACTACTTGCAGAAGTTCCCGAGTCGTCGGATTCAAATGAACGAACTACTTCTGATGGAGACGCGCCTGTCGAAAATGTCTCCACACCTGACAGAGTAGTGGAGAATCGTCAAGATGGTGCGTGGTACTATGGCCGTTGGACCGTTGACAATGTTGCCAACAGTCGTGAAATGATGGATGTGATCGATGTTGGAATGACAGATGCATGTATTCGAGTGATGATTGCTGCAGTTGTTAATTATTTCCAGGAGAACAGATTCACACCGTGTGG                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD144301             [                                                                                                                                                                                                                                           ATGACAGATGCATGTATTCGAGTGATGATTGCTGCTGTTGTTAATTATTTCCAGGAGAACAGATTCGCACCGTGTGGGTTGTTGAGAGACAGTTATGCAAGTGAGATACTGAGAAGTGACCTAATGGATAAGCATGGATTAACAGACAAACGTGATAAAATTGAAGCGATGCGTATCACTGGTTATTGGGTCTCGAGACTCTATGTGTTTCATATGGCGACGAAGCATCGTGATTTGGAACATCCAATCAGACCCATANATAACGTTGGTCTGGTGCGTNCTCTGAAACTAGATATCTGTCAGTA                                                                               ]
[+] EMBL CD063428             [                                                                                                                                                                                                                                                                                                            CGCACCGTGTGGGTTGTTGAGAGACAGTTATGCAAGTGAGATACTGAGAAGTGACCTAATGGATAAGCATGGATTAACAGACAAACGTGATAAAATTGAAGCGATGCGTATCACTGGTTATTGGGTCTCGAGACTCTATGTGTTTCATATGGCGACGAGGCATCGTGATTTGGAACATCCAATCAGACCCATAAATAACGTTGGTCTGGTGCGTCCTCTGAAACTAGATATCTGTCAGTATTTCGAGGACTTGACAGCTAGATTTATCCGTACACGAATCGCGCATCAGATTGCCAGTCGAATGGTCCGATCTGTGTGT]
[+] EMBL CD139693             [                                                                                                                                                                                                                                                                                                                                                        TGAGAAGTGACCTAATGGATAAGCATGGATTAACAGACGAACGTGATAAAATTGAAGCGATGCGTATCACTGGTTATTGGGTTTCGAGACTCTATGTGTTACATATGGCGACGAAGCATCGTAATCTGGAACACCCAATCAGACCCATAAATAACGTTGGTCTGGTGCGTCCTCTGAAACTAGATATCTGTCAGTATTTCGAGGACTTGACAGCTAGATTTATCCGTACACGAATCGCGCATCAGATTGCCAGTCGAATGG              ]




>consensus_7609#1
AAAATGGCTGGCGAATGCTGCCAGTGCTGCGATTCTCGCAGGACTACTTGCAGAAGTTCC
CGAGTCGTCGGATTCAAATGAACGAACTACTTCTGATGGAGACGCGCCTGTCGAAAATGT
CTCCACACCTGACAGAGTAGTGGAGAATCGTCAAGATGGTGCGTGGTACTATGGCCGTTG
GACCGTTGACAATGTTGCCAACAGTCGTGAAATGATGGATGTGATCGATGTTGGAATGAC
AGATGCATGTATTCGAGTGATGATTGCTGCAGTTGTTAATTATTTCCAGGAGAACAGATT
CGCACCGTGTGGGTTGTTGAGAGACAGTTATGCAAGTGAGATACTGAGAAGTGACCTAAT
GGATAAGCATGGATTAACAGACAAACGTGATAAAATTGAAGCGATGCGTATCACTGGTTA
TTGGGTCTCGAGACTCTATGTGTTTCATATGGCGACGAAGCATCGTGATTTGGAACATCC
AATCAGACCCATAAATAACGTTGGTCTGGTGCGTCCTCTGAAACTAGATATCTGTCAGTA
TTTCGAGGACTTGACAGCTAGATTTATCCGTACACGAATCGCGCATCAGATTGCCAGTCG
AATGGTCCGATCTGTGTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7609#0      GTTATTCGATTACCTGAAAAATTGCTGTGAACAAGTTAGGTGATAATGTTTGGACAATGA 60
consensus_7609#1      ------AAAATGGCTGGCGAAT-GCTG----CCAGTGCTGCGATTCTCGCAGGACTACTT 49
                              * *  ***   *** ****    * ***   * ***  *    **** *   

consensus_7609#0      AAGTGATTCACCTCAGAGTTCTTAGTAGCTGCTTTACTGAATGGTCGACATGAATTCATC 120
consensus_7609#1      GCAGAAGTTCCC---GAGTCGTCGGATTCAAATGAACGAACTACTTCTGATGGAGACGCG 106
                           * *  **   ****  *  *   *   *  **  * *  *    *** *  *   

consensus_7609#0      TTTTTTTACAATACGCTTGCAACGAATGAAGATGTAAAGGACTCACTATCGAATTTGGCT 180
consensus_7609#1      CCTGTCGAAAATGTCTCCACACCTGACAGAGTAGTGGAGAATCGTCAA--GATGGTGCGT 164
                        * *  * ***       ** *  *   **  **  ** *    * *  **   **  *

consensus_7609#0      GATGATTTGGGATGCATTCTGTTTGACCATTTACGACAAGTAGATGCGGACTTCAATTTT 240
consensus_7609#1      GGTACTATGG--------CCGTTGGACCGTTGACAAT-----GTTGCCAACAGTCGTGAA 211
                      * *  * ***        * *** **** ** ** *      * ***  **     *   

consensus_7609#0      ATGTTACCTGTCACTGCGACATACGATCTAGACACTCGACTCATGTTGATGCTTGACAGG 300
consensus_7609#1      ATGATGGATGTGATCGATGTTGGAATGACAGATGCATGTATTCGAGTGATGATTG-CTGC 270
                      *** *   *** *  *             ***  *  *  *     ***** *** * * 

consensus_7609#0      AGTATGATGCCTGAGTCCAACACGGACGATTCCACACGTGTTAAGACTGCGTGGGTGAC- 359
consensus_7609#1      AGT-TGTTAATTATTTCCAGGA-GAACAGATTCGCAC-CGTGTGGGTTGT-TGAGAGACA 326
                      *** ** *   *   ****  * * **   * * ***  **   *  **  ** * *** 

consensus_7609#0      GTTAGCCGCAATGGCCTCTGCTTA-CATCTTCAAAAATGTTGGAGAATCGGTTTCCAAAC 418
consensus_7609#1      GTTATGCAAGTGAGATACTGAGAAGTGACCTAATGGATAAGCATGGATTAACAGACAAAC 386
                      ****  *      *   ***   *    * * *   **      * **       *****

consensus_7609#0      CTCTTCGAAAATGGCTGGCGAATGCTGCCAGTGCTGCGATTCTCGCAGGACTACTTGCAG 478
consensus_7609#1      GTGATAAAATTGAAGCGATGCGTATCACTGGTTAT-TGGGTCTCGAGACTCTATGTGT-- 443
                       *  *  **       *  *  *    *  **  *  *  *****     ***  **   

consensus_7609#0      AAGTTCCCGAGTCGTCGGAACAGATGAACAAACCACTTCTGAT-GGACACGCGCCTGTCG 537
consensus_7609#1      ---TTCATATGGCGACGAAGCATCGTGATTTGGAACATCCAATCAGACCCATAAATAACG 500
                         ***    * ** ** * **     *      ** **  **  *** *     *  **

consensus_7609#0      AAATTGTCTCCACACCTGACAGAGTAGTGGAGAATCGTCAAGATGGTGCGTTGTACTGTG 597
consensus_7609#1      ---TTGGTCTGGTGCGTCCTCTGAAACTAGATATCTGTCAGTATTTCGAGGACTTGACAG 557
                         ***        * *        * * ** *   ****  **   * *   *     *

consensus_7609#0      CCGTTGANAACCAAAAGACAATGTTGCCAACAGTCGTGAAATGAAGGATGTGAACGATGT 657
consensus_7609#1      CTAGATTTATCCGTACACGAATCGCGCATCAGATTGCCAGTCGAATGGTCCGATCTGTGT 617
                      *       * **  *    ***   **      * *  *   *** * *  ** *  ***

consensus_7609#0      TGGAATGACAGATGCATGTATTCGAATGATGAATGCTGCTGGT 700
consensus_7609#1      GT----------------------------------------- 619