These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7614#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 557 fasta sequence [TGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGAGTCTGTCAATTTTCTAATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACCTATGA] [+] EMBL CD148605 [TGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATT ] [-] EMBL CD090424 [ taTTGTGTGATTTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGCGAACTTGATTTTGGATTGGCATATCGAGATTGTCTATTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGAGTCTGTCAATTTTCTAATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACCTATGA] consensusID : consensus_7614#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence [TTCTCCAGGGGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGTTTGGATGATGCTAGATAACAGTGTTGAGTAATGATTTTCACCAGGATCTCTGAGGAACAGTCCTAATGATTGTTTTTGTTTGACAGGTGATAGTGTGTGGATCGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGAT] [-] EMBL CD146539 [TTCTCCAGGGGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGTTTGGATGATGCTAGATAACAGTGTTGAGTAATGATTTTCACCAGGATCTCTGAGGAACAGTCCTAATGATTGTTTTTGTTTGACAGGTGATAGTGTGTGGATCGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGAT] consensusID : consensus_7614#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 517 fasta sequence [GTCACGATGATACCGTTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAGAGAGACAGTGAGAAGCAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGAGTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATCGGTTTAATATTTTAATATATCCAAATAAATTTTCATATATAATAAAGTAAACCTTGATAGCAATCTAGTTGGAAACAATATAGTGAGGCGGCCTGAGTGAATATCTGGACTACCTGTTCCTACCATCTAGATATTTCAACAAGTTATCTTTATTGCTTGTTTTAAAACTTTAATATGTTTATTATTCACATTACAAATTCAGGCCCGTAAATAAAACGTTTACAACCTATCGCTTTACAAGGTACTAAAAAGTACAATCAGAGACATCGTAGTGTCTGACAATGTGAATAGGAAAAAATGAACATTAATCACATGTCGATTCCTC] [-] EMBL CD084700 [GTCACGATGATACCGTTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAGAGAGACAGTGAGAAGCAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGAGTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATCGGTTTAATATTTTAATATATCCAAATAAATTTTCATATATAATAAAGTAAACCTTGATAGCAATCTAGTTGGAAACAATATAGTGAGGCGGCCTGAGTGAATATCTGGACTACCTGTTCCTACCATCTAGATATTTCAACAAGTTATCTTTATTGCTTGTTTTAAAACTTTAATATGTTTATTATTCACATTACAAATTCAGGCCCGTAAATAAAACGTTTACAACCTATCGCTTTACAAGGTACTAAAAAGTACAATCAGAGACATCGTAGTGTCTGACAATGTGAATAGGAAAAAATGAACATTAATCACATGTCGATTCCTC] consensusID : consensus_7614#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 430 fasta sequence [GTACCCCAAAAACTCTTGAGCTCACCCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGA] [+] EMBL CD128752 [GTACCCCAAAAACTCTTGAGCTCACCCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7614#1 TTCTCCAGGGGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTG 60 consensus_7614#3 ------------------------------------------------------------ consensus_7614#0 ------------------------------------------------------------ consensus_7614#2 ------------------------------------------------------------ consensus_7614#1 TGAGTTTGGATGATGCTAGA---TAACAGTGTTGAGTAATGATTTTCACCAGGATCTCTG 117 consensus_7614#3 -GTACCCCAAAAACTCTTGAGCTCACCCGTGATGGTCGATGTAGTTGACTTGAGTTTTCT 59 consensus_7614#0 ------------------------------------------------------------ consensus_7614#2 ------------------------------------------------------------ consensus_7614#1 AGGAACAGTCCTAATGATTGTTTTTGTTTGACAGGTGATAGTGTGTGGATCGATGGTATT 177 consensus_7614#3 A---------CTTATGAGTAATTGTG------AGGTGATAGTGTGTGGATTGATGGTATT 104 consensus_7614#0 --------------------------------TGTTGACT-TGAGTTTTCTACTTATGAG 27 consensus_7614#2 ------------------------------------------------------------ consensus_7614#1 GGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCA 237 consensus_7614#3 GGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCA 164 consensus_7614#0 TAATTGTGAGGTGATAGTGTG---TAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCA 84 consensus_7614#2 ------------------------------------------------------------ consensus_7614#1 ATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATAC 297 consensus_7614#3 ATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATAC 224 consensus_7614#0 ATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATAC 144 consensus_7614#2 -----------------------------------------------GTCACGATGATAC 13 ************* consensus_7614#1 CGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGT 357 consensus_7614#3 CGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGT 284 consensus_7614#0 CGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGT 204 consensus_7614#2 CGTTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAGAGAGACAGT 73 ** *********************************************** ********* consensus_7614#1 GAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGA 417 consensus_7614#3 GAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGA 344 consensus_7614#0 GAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGA 264 consensus_7614#2 GAGAAGCAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGAGTGTGAACTTGA 133 ** ** ****************************************** *********** consensus_7614#1 TTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGT 477 consensus_7614#3 TTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGT 404 consensus_7614#0 TTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGT 324 consensus_7614#2 TTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATCG 193 ********************************************************** consensus_7614#1 AGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGT 537 consensus_7614#3 AGTTGACTTGAGTTTTCTACTTATGA---------------------------------- 430 consensus_7614#0 AGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTG--AGTCTGTCAATTTTCTAA 382 consensus_7614#2 GTTTAAT---ATTTTAATATATCCAAATAAATTTTCATATATAATAAAGTAAACCTTGAT 250 ** * * *** ** * * consensus_7614#1 ATTGGAT----------------------------------------------------- 544 consensus_7614#3 ------------------------------------------------------------ consensus_7614#0 TTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAAC 442 consensus_7614#2 AGCAATCTAGT-TGGAAACAATATAGTGAGGCGGCCTGAGTGAATATCTGGACTACCTGT 309 consensus_7614#1 ------------------------------------------------------------ consensus_7614#3 ------------------------------------------------------------ consensus_7614#0 ATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTG 502 consensus_7614#2 TCCTACCATCTAGATATTTCAACAAGTTATCTTTATTGCTTGTTTTAAAACTTTAATATG 369 consensus_7614#1 ------------------------------------------------------------ consensus_7614#3 ------------------------------------------------------------ consensus_7614#0 ATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACCTATGA----- 557 consensus_7614#2 TTTATTATTCACATTACAAATTCAGGCCCGTAAATAAAACGTTTACAACCTATCGCTTTA 429 consensus_7614#1 ------------------------------------------------------------ consensus_7614#3 ------------------------------------------------------------ consensus_7614#0 ------------------------------------------------------------ consensus_7614#2 CAAGGTACTAAAAAGTACAATCAGAGACATCGTAGTGTCTGACAATGTGAATAGGAAAAA 489 consensus_7614#1 ---------------------------- consensus_7614#3 ---------------------------- consensus_7614#0 ---------------------------- consensus_7614#2 ATGAACATTAATCACATGTCGATTCCTC 517 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||