cluster # 7617

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Schistosoma mansoni
cluster # 7617 cluster # 7617 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7617#0 length = 508 sequences # 4

consensus_7617#1 length = 295 sequences # 1

consensusID : consensus_7617#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 508
fasta sequence

                              [TTTTTTTTTTTTTTTTTGATGTGAATATATGAATATATTGATACATATACAGATTCAGTTACTCAATAACATAGCGGAGTCATCAAAACCGTCCGGTAGTTCTTCCAGTGCCACGAACAGTTGCAACAC-GTCCACGAACAAAAGTGCCACGCCCGCGAACACCAGCCCTTAACATTGCATTCTTCCCTCTTCCCGTGCCTAATCCCTTGGCACCCTGTGGACGTTTCAACATAGGGGAGTTTTTCAGCATATCAGGAAGGATGAGGAAACGAATTTTACTGCCTCGAATATATACTTGTTGAAGGTTTGATGTACGACCGTCACGGGAAGTCATTATTAGGTCGCACATGTGAACATTCATATTATCTTCCGCTTCAACAAGTTTTCCACGAAAAACTTCGCCACTAACAGTTTCTAGAGTAACGACATGTCCCTCGGCATCATGCAAAACTTTGATAGGGATGCCAACTGACATTGCTTCCACGAAGTTCCAAAACCCGCGCTAATT]

[+] EMBL AI395446             [TTTTTTTTTTTTTTTTTGATGTGAATATATGAATATATTGATACATATACAGATTCAGTTACTCAATAACATAGCGGAGTCATCAAAACCGTCCGGTAGTTCTTCCAGTGCCACGAACAGTTGCAACAC GTCCACGAACAAAAGTGCCACGCCCGCGAACACCAGCCCTTAACATTGCATTCTTCCCTCTTCCCGTGCCTAATCCCTTGGCACCCTGTGGACGTTTCAACATAGGGGAGTTTTTCAGCATATCAGGAAGGATGAGGAAACGAATTTTACTGCCTCGAATATATACTTGTTGAAGGTTTGATGTACGACCGTCACGGGAAGTCATTATTAGGTCGCACATGTGAACATTCATATTATCTTCCGCTTCAACAAGTTTTCCACGAAAAACTTCGCCACTAACAGTTTCTAGAGTA                                                                                      ]
[+] EMBL CD146038             [                                                                                                                        TTGCAACTCTGCCCACGAACAAAAGTGTCACGCCCGCGAACACCAGCCCTTAACATTGCATTCTTCCCTCTTCCCGTGCCTAATCCCTTGGCACCCTGTGGACGTTTCAACATAGGGGAGTTTTTCAGCATATCAGGAAGGATGAGGAAACGAATTTTACTGCCTCGAATATATACTTGTTGAAGGTTTGATGTACGACCGTCACGGGAAGTCATTATTAGGTCGCACATGTGAACATTCATATTATCTTCCGCTTCAACAAGTTTTCCACGAAAAACTTCGCCACTAACAGTTTCTAGAGTAACGACATGTCCCTCGGCATCATGCAAAACTTTGATAGGGATGCCAACTGACATTGCTTCCACGAAGTTCCAAAACCCGCGCTAATT]
[-] EMBL CD185340             [                                                                                                                                                                                           CTCTTCCCGTGCCTAATCCCTTGGCACCCTGTGGACGTTTCAACATAGGGGAGTTTTTCAGCATATCAGGAAGGATGAGGAAACGAATTTTACTGCCTCGAATATATACTTGTTGAAGGTTTGATGTACGACCGTCACGGGAAGTCATTATTAGGTCGCACATGTGAACATTCATATTATCTTCCGCTTCAACAAGTTTTCCACGAAAAACTTCGCCACTAACAGTTTCTAGAGTAACGACATGTCCCTCGGCATCATGCAAAACTTTGATAGGGATGCCAACTGACATTGCTTCCA                         ]
[+] EMBL CD154290             [                                                                                                                                                                                                                                          GGGGAGTTTTTCAGCATATCAGGAAGGATGAGGAAACGAATTTTACTGCCTCGAATATATACTTGTTGAAGGTTTGATGTACGACCGTCACGGGAAGCCATTATTAGGTCGCACATGTGAACATTCATATTATCTTCCGCTTCAACAAGTTTTCCACGAAAAACTTCGCCACTAACAGTTTCTA                                                                                           ]




>consensus_7617#0
TTTTTTTTTTTTTTTTTGATGTGAATATATGAATATATTGATACATATACAGATTCAGTT
ACTCAATAACATAGCGGAGTCATCAAAACCGTCCGGTAGTTCTTCCAGTGCCACGAACAG
TTGCAACACGTCCACGAACAAAAGTGCCACGCCCGCGAACACCAGCCCTTAACATTGCAT
TCTTCCCTCTTCCCGTGCCTAATCCCTTGGCACCCTGTGGACGTTTCAACATAGGGGAGT
TTTTCAGCATATCAGGAAGGATGAGGAAACGAATTTTACTGCCTCGAATATATACTTGTT
GAAGGTTTGATGTACGACCGTCACGGGAAGTCATTATTAGGTCGCACATGTGAACATTCA
TATTATCTTCCGCTTCAACAAGTTTTCCACGAAAAACTTCGCCACTAACAGTTTCTAGAG
TAACGACATGTCCCTCGGCATCATGCAAAACTTTGATAGGGATGCCAACTGACATTGCTT
CCACGAAGTTCCAAAACCCGCGCTAATT

consensusID : consensus_7617#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 295
fasta sequence

                              [TGGTTGGTGATTTGAGGGTGGACGCAATCGACGTTGGTTTTACATTAGATGACGAATGAGAAGCAGACAATGAGAAGACATGCGGAATGATGTGAATATATGAATATATTGATACATATACAGATTCAGGTACTCAATAACATAGCGGAGTCATCAAAACCGTCCGGTAGTTCTTCCAGTGCCACGAACAGTTGCAACACGTCCACGAACAAAAGTGCCACGCCCGCGAACACCAGCCCTTAACATTGCATTCTTCCCTCTTCCCGTGCCCAATCCCTTGGCACCCTGTGGACGT]

[-] EMBL CD141203             [TGGTTGGTGATTTGAGGGTGGACGCAATCGACGTTGGTTTTACATTAGATGACGAATGAGAAGCAGACAATGAGAAGACATGCGGAATGATGTGAATATATGAATATATTGATACATATACAGATTCAGGTACTCAATAACATAGCGGAGTCATCAAAACCGTCCGGTAGTTCTTCCAGTGCCACGAACAGTTGCAACACGTCCACGAACAAAAGTGCCACGCCCGCGAACACCAGCCCTTAACATTGCATTCTTCCCTCTTCCCGTGCCCAATCCCTTGGCACCCTGTGGACGT]




>consensus_7617#1
TGGTTGGTGATTTGAGGGTGGACGCAATCGACGTTGGTTTTACATTAGATGACGAATGAG
AAGCAGACAATGAGAAGACATGCGGAATGATGTGAATATATGAATATATTGATACATATA
CAGATTCAGGTACTCAATAACATAGCGGAGTCATCAAAACCGTCCGGTAGTTCTTCCAGT
GCCACGAACAGTTGCAACACGTCCACGAACAAAAGTGCCACGCCCGCGAACACCAGCCCT
TAACATTGCATTCTTCCCTCTTCCCGTGCCCAATCCCTTGGCACCCTGTGGACGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7617#0      ------------------------------------------------------------
consensus_7617#1      TGGTTGGTGATTTGAGGGTGGACGCAATCGACGTTGGTTTTACATTAGATGACGAATGAG 60
                                                                                  

consensus_7617#0      -----------TTTTTTTTTTTTTTTTTGATGTGAATATATGAATATATTGATACATATA 49
consensus_7617#1      AAGCAGACAATGAGAAGACATGCGGAATGATGTGAATATATGAATATATTGATACATATA 120
                                          *      *********************************

consensus_7617#0      CAGATTCAGTTACTCAATAACATAGCGGAGTCATCAAAACCGTCCGGTAGTTCTTCCAGT 109
consensus_7617#1      CAGATTCAGGTACTCAATAACATAGCGGAGTCATCAAAACCGTCCGGTAGTTCTTCCAGT 180
                      ********* **************************************************

consensus_7617#0      GCCACGAACAGTTGCAACACGTCCACGAACAAAAGTGCCACGCCCGCGAACACCAGCCCT 169
consensus_7617#1      GCCACGAACAGTTGCAACACGTCCACGAACAAAAGTGCCACGCCCGCGAACACCAGCCCT 240
                      ************************************************************

consensus_7617#0      TAACATTGCATTCTTCCCTCTTCCCGTGCCTAATCCCTTGGCACCCTGTGGACGTTTCAA 229
consensus_7617#1      TAACATTGCATTCTTCCCTCTTCCCGTGCCCAATCCCTTGGCACCCTGTGGACGT----- 295
                      ****************************** ************************     

consensus_7617#0      CATAGGGGAGTTTTTCAGCATATCAGGAAGGATGAGGAAACGAATTTTACTGCCTCGAAT 289
consensus_7617#1      ------------------------------------------------------------
                                                                                  

consensus_7617#0      ATATACTTGTTGAAGGTTTGATGTACGACCGTCACGGGAAGTCATTATTAGGTCGCACAT 349
consensus_7617#1      ------------------------------------------------------------
                                                                                  

consensus_7617#0      GTGAACATTCATATTATCTTCCGCTTCAACAAGTTTTCCACGAAAAACTTCGCCACTAAC 409
consensus_7617#1      ------------------------------------------------------------
                                                                                  

consensus_7617#0      AGTTTCTAGAGTAACGACATGTCCCTCGGCATCATGCAAAACTTTGATAGGGATGCCAAC 469
consensus_7617#1      ------------------------------------------------------------
                                                                                  

consensus_7617#0      TGACATTGCTTCCACGAAGTTCCAAAACCCGCGCTAATT 508
consensus_7617#1      ---------------------------------------