These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7618#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 671 fasta sequence [ATTGTAAGACCTCTGAAGGTCGGTCACATTTTAAGATGAATTTATTTAAACCACTGATTATAAAACCAAACAGT-GGTTTGATCAACAGTTTGTGCAATAAAATGCGATTACTGTCCATCCCACCATTGATACCGTCGGAAATACTATACCAGCGTGAAATAACACCTGCTAAGACACCAGCTCATCATAATAATCCAGAAATCGAAAAGCTGTTAAAAAACGAATTATGTGGTTACCCCGCATATTCCGCACGGAAAATTCGTCGTGGCTTTCAGGATGCTATTATGATTCGTGACTACAAGCGCAGACAAGTTTCTGCTCATTTTTGCAACTTGCGCATAAGACTAAACGCTATCAGAAAAAACACGATTTTACCGCAAGAAATCAAGGATTTAGCCACGTTATATATTTCGTCATTACCACGTGATAGCAATTGGACGCGCATTTTAAGCAGATGTATCGTTACTTCGAGGAGACGAGGATGTAAGACACGTTGGAAAGTTTCACGTATTATATGGAGAAAATATGCAGACTATAATAGAATGTCTGGAGTTCTTTGGGCTCGCTGGGGATCAAATACTCGGAGCGTACGAAGACATATGTTATGGCCGCCTCCTAGAGAAACCTCTGTCTCTGAATATGTACGCCGATATCACAAAAATTTGGCTGAT] [+] EMBL CD141214 [ATTGTAAGACCTCTGAAGGTCGGTCACATTTTAAGATGAATTTATTTAAACCACTGATTATAAAACCAAACAGT GGTTTGATCAACAGTTTGTGCAATAAAATGCGATTACTGTCCATCCCACCATTGATACCGTCGGAAATACTATACCAGCGTGAAATAACACCTGCTAAGACACCAGCTCATCATAATAATCCAGAAATCGAAAAGCTGTTANAAAACGAATTATGTGGTTACCCCGCATATTCCGCACGNAAAATTCGTCG ] [-] EMBL CD137383 [ TTTAACCCACTGATTATAAAACCCAACAGT GGTTTGATCAACAGTTTGTGCAATAAAATGCGATTACTGTCCATCCCACCATTGATACCGTCGGAAATACTATACCAGCGTGAAATAACACCTGCTAAGACACCAGCTCATCATAATAATCCAGAAATCGAAAAGCTGTTAAAAAACGAATTATGTGGTTACNCCGCATATTCCGCACGGAAAATTCGTCGTGGCTTTCAGGATGCTATTATGATTCGTGACTACAAGCGCAGACAAGTTTCTGCTCATTTTTGCAACTTGCGCATAAGACTAAACGCTATCAGAAAAAACACGATTTTACCGCAAGAAATCAAGGATTTAGCCACGTTATATATTTCGTCATTACCACGTGATAGCAATTGGACGCGCATTTTAAGCAGATGTATCGTTACTTCGAGGAGACGAGGATGTAAGACACGTTGGAAAGTTTCACGTATTATATGGAGAAAATATGCAGACTATAATAGAATGTCTGGAGTTCTTTGGGCTCGCTGGGGATCAAATACTCGGAGCGTACGAA ] [+] EMBL CD082331 [ TAAACCACTGATTATAAAACCAAACAGTGGGTTTGATCAACAGTTTGTGCACTAAAATGCGATTACTGTCCATCCCACCATTGATACCGTCGGAAATACTATACCAGCGTGAAATAACACCTGCTAAGACACCAGCTCATCATAATAATCCAGAAATCGAAAAGCTGTTAAAAAACGAATTATGTGGTCACCCCGCATATTCCGCACGGAAAATTCGTCGTGGCTTTCAGGATGCTATTATGATTCGTGACTACAAGCGCAGACAAGTTTCTGCTCATTTTTGCAACTTGCGCATAAGACTAAACGCTATCAGAAAAAACACGATTTTACCGCAAGAAATCAAGGATTTAGCCACGTTATATATTTCGTCATTACCACGTGATAGCAATTGGACGCGCATTTTAAGCAGATGTATCGTTACTTCGAGGAGACGAGGATGTAAGACACGTTGGAAAGTTTCACGTATTATATGGAGAAAATATGCAGACTATAATAGAATGTCTGGAGTTCTTTGGGCTCGCTGGGGATCAAATACTCGGAGCGTACGAAGACATATGTTATGGCCGCCTCCTAGAGAAACCTCTGTCTCTGAATATGTACGCCGATATCACAAAAATTTGGCTGAT] [-] EMBL CD097359 [ CAACAGTTTGTGCAATAAAATGCGATTACTGTCCATCCCACCATTGATACCGTCGGAAATACTATACCAGCGTGAAATAACACCTGCTAAGACACCAGCTCATCATAATAATCCAGAAATCGAAAAGCTGTTAAAAAACGAATTATGTGGTTACCCCGCATATTCCGCACGGAAAATTCGTCGTGGCTTTCAGGATGCTATTATGATTCGTGACTACAAGCGCAGACAAGTTTCTGCTCATTCTTGCAACTTGCGCATAAGACTAAACGCTATCAGAAAAAACACGATTTTACCGCAAGAAATCAAGGATTTAGCCACGTTATATATTTCGTCATTACCACGTGATAGCAATTGGACGCGCATTTTAAGCAGATGTATCGTTACTTCGAGGAGACGAGGATGTAAGACACGTTGGAAAGTTTCACGTATTATATGGAGAAAATATGCAGACTATAATAGAATGTCTGGAGTTCTTTGGGCTCGCTGGGGATCAAATACTCGGAGCGTACGAAGA ] consensusID : consensus_7618#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence [AGATTGCACATCAGGGAACGGACACCCAGATAAAGTCATGCTAATTCTGTCAACGAAAAAGGCTTTAAAGTCATTACAACACCTGTTTCATATCTCCCATTATAGGCCCGCTATTTTTCACAGCGTTATAAGAATCGAAGGCAATTAAAGATGGATTTCAGAATATGATAATTAATGACATCAGATGGGTCAATAAGCCCATTTCAGTTTTGCTTGGGAATCGGATATCCACACATGCTCATTCCATGAAGAAACGAACGACCGAACAAGGTGTAATCTTAATTCCCACTTACAATTAGAATCAGATTAGCTTATTTGACAGAACCCAATGAATTTATTTAAACCACTGATTATAAAACCAAACAGTGGTTTGATCAACAGTTTGTGCAATAAAATGCGATTACTGTCCATCCCACCATTGATACCGTCGGAAATACTATACCAGCGTGAAATAACACCTGCTAAGACACCAGCTCATCATAATAATCCAGAAATCGAAAAGCTGTTAAAAAACGAATTATGTGGTTACCCCGCATATTCCGCACGGAAAAGTAGATTGTGACATTGCTATTTATTCCTACATAGNTTCGTCGTGGCTTTCAGGATGCTATTATGATTCGTGACTACAAGCGCAGACCAGTTTCTGCTCATTNNTTGCACTTGCG] [+] EMBL CD079398 [AGATTGCACATCAGGGAACGGACACCCAGATAAAGTCATGCTAATTCTGTCAACGAAAAAGGCTTTAAAGTCATTACAACACCTGTTTCATATCTCCCATTATAGGCCCGCTATTTTTCACAGCGTTATAAGAATCGAAGGCAATTAAAGATGGATTTCAGAATATGATAATTAATGACATCAGATGGGTCAATAAGCCCATTTCAGTTTTGCTTGGGAATCGGATATCCACACATGCTCATTCCATGAAGAAACGAACGACCGAACAAGGTGTAATCTTAATTCCCACTTACAATTAGAATCAGATTAGCTTATTTGACAGAACCCAATGAATTTATTTAAACCACTGATTATAAAACCAAACAGTGGTTTGATCAACAGTTTGTGCAATAAAATGCGATTACTGTCCATCCCACCATTGATACCGTCGGAAATACTATACCAGCGTGAAATAACACCTGCTAAGACACCAGCTCATCATAATAATCCAGAAATCGAAAAGCTGTTAAAAAACGAATTATGTGGTTACCCCGCATATTCCGCACGGAAAAGTAGATTGTGACATTGCTATTTATTCCTACATAGNTTCGTCGTGGCTTTCAGGATGCTATTATGATTCGTGACTACAAGCGCAGACCAGTTTCTGCTCATTNNTTGCACTTGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7618#0 --ATTGTAAGACCTCTGAAGGTCGGTCACATT---TTAAGATGAATTTATTTAAACCACT 55 consensus_7618#1 AGATTGCACATCAGGGAACGGACACCCAGATAAAGTCATGCTAATTCTGTCAACGAAAAA 60 **** * * * ** * ** ** * * * * * * * * * * consensus_7618#0 GATTATAAAACCAAACAGTGGTTTGATCAACAGTTTGTGCAATAAAATGCGATTACTGTC 115 consensus_7618#1 GGCTTTAAAGTCATTACAACACCTGTTTCATATCTC--CCATTATAGGCCCGCTATTTTT 118 * * **** ** ** * * * * ** ** * * ** * * consensus_7618#0 CATCCCACCATTGATACCGTCGGAAATACTATACCAGCGTGAAATAACACCTGCTAA-GA 174 consensus_7618#1 CACAGCGTTATAAGAATCGAAGGCAATTAAAGATGGATTTCAGAATATGATAATTAATGA 178 ** * ** * ** ** *** * * * * * * *** ** consensus_7618#0 CACCAGCTCATCATAATAATCCAGAAATCGAAAAGCTGTTAAAAAACGAATTATGTGGTT 234 consensus_7618#1 CATCAGATGGGT-CAATAAGCCC---ATTTCAGTTTTGCTTGGGAATCGGATATCCACAC 234 ** *** * ***** ** ** * ** * ** *** consensus_7618#0 ACCCCGCATATTCCGCACGGAAAATTCGTCGTGGCTTTCAGGATGCTATTATGATTCGTG 294 consensus_7618#1 AT---GCTCATTCCATGAAGAAA---CGAACGACCGAACAAGGTGTAATCTTAATTCCCA 288 * ** ***** **** ** * ** * ** ** * **** consensus_7618#0 ACTACAAGCGCAGACAAGTTTCTGCTCATTT--TTGCAACTTGCGCATAAGACTAAAC-- 350 consensus_7618#1 CTTACAATTAGAATCAGATT--AGCTTATTTGACAGAACCCAATGAATTTATTTAAACCA 346 ***** * ** ** *** **** * * * * ** ***** consensus_7618#0 ---GCTATCAGAAAAAACACGATTTTACCGCAAGAAATCAAGGATTTAGCCACGTTATAT 407 consensus_7618#1 CTGATTATAAAACCAAACAGTGGTTTGAT-CAACAGTTTGTGCAATAAAATGCGAT-TAC 404 *** * * ***** *** *** * * * * * * ** * ** consensus_7618#0 ATTTCGTCATTACCACGTGATAGCAATTGGACGCGCATTTTAAGCAGATGTATCGTTACT 467 consensus_7618#1 TGTCCATC-CCACCAT-TGATACCG-TCGGAAATACTATACCAGCG--TGAAATAACACC 459 * * ** **** ***** * * *** * * *** ** * ** consensus_7618#0 TCGAGGAGACGAGGATGTAAGACACGTTGGAAAGTTTCACGTATTATATGGA-GAAAATA 526 consensus_7618#1 T-------GCTAAGACACCAG-CTCATCATAATAATCCAGAAATCGAAAAGCTGTTAAAA 511 * * * ** ** * * * ** * ** ** * * * ** * consensus_7618#0 TGCAGACTATAATAGAATGTCTGGAGTTCTTTGGGCTCGCTGG-GGATCAAATACTCGGA 585 consensus_7618#1 AACGAATTATG--TGGTTACCCCGCATATTCCGCACGGAAAAGTAGATTGTGACATTGCT 569 * * *** * * * * * * * * * *** * * consensus_7618#0 GCGTACGAAGACATATGTT-ATGGCCGCCTCCTAGAGAAACCTCTGTCTC-TGAATATGT 643 consensus_7618#1 ATTTATTCCTACATAGNTTCGTCGTGGCTTTCAGGATGCTATTATGATTCGTGACTACAA 629 ** ***** ** * * ** * * ** * ** ** *** ** consensus_7618#0 ACGCCGAT--ATCACAAAAATTTGGCTGAT------ 671 consensus_7618#1 GCGCAGACCAGTTTCTGCTCATTNNTTGCACTTGCG 665 *** ** * * ** ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||