cluster # 7619

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Schistosoma mansoni
cluster # 7619 cluster # 7619 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7619#0 length = 800 sequences # 3

consensus_7619#1 length = 665 sequences # 2

consensusID : consensus_7619#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 800
fasta sequence

                              [GAGGCCAANAATGCGGCACGAGGCACAAAAGTACTTACTGACTGGACAGAAACCGCAGCAGCTGACTTTCGTCCCTTTTTCTTGGTTCATCTGACCTCACTACAATACAAATTACTGCCAATAAAACTACACATGTTCAAAAAGTTTGACGAAAAGGAGGATATTTCCTGTACAAATAATGCGAAGAACTCTATCGTGAAATCTTTGCGTACTCGACTAACTGAAGGTTATGGCATTGATAGTAAAATGGTTGATCAGATTTTACCTAAGAAAGATGTTGTAAAACACATTAAGTGTCACGAACATGTCGACTTGTATTCAGATTCTGATGGTGAAGTCATGTTTTTCCGACAACGTGAGGGTCCGTTTATTCCATCGCTGAGATTACTTCATAAATATCCTTTCATCCTACCTCATTTACAAGTTGACAAAGGTGCTATCAAGCATGTTTTAAATGGATCAAATATTATGTGTCGTGGATTGACATCACCCGGTGCTCGAATGACAGAAGTTCCTCAAGAGTCAGTTGTTGCTGTAATGGCAGAAGGCAAAACAAATGCACTCGCAGTTGGCATTACTCTGTTATCGACTGATGAGATCTTATCAACCAACAGTGGCATTGGGGTCAAAAATGTACATTATTTGAATGATGGATTATGGCGTCTTAAAGGCGTACGATAATTGACTTTGTTAAAAGAACTCTAAGTACATTCTTATTTGTACATAGACCTTGNGATCACTTNCTTGAAATGA-TTCTAATGTACTTGCCGAAGTGAT-ATATCCTGAGTTTAT-AATAAACT]

[+] EMBL CD081362             [GAGGCCAANAATGCGGCACGAGGCACAAAAGTACTTACTGACTGGACAGAAACCGCAGCAGCTGACTTTCGTCCCTTTTTCTTGGTTCATCTGACCTCACTACAATACAAATTACTGCCAATAAAACTACACATGTTCAAAAAGTTTGACGAAAAGGAGGATATTTCCTGTACAAATAATGCGAAGAACTCTATCGTGAAATCTTTGCGTACTCGACTAACTGAAGGTTATGGCATTGATAGTAAAATGGTTGATCAGATTTTACCTAAGAAAGATGTTGTAAAACACATTAAGTGTCACGAACATGTCGACTTGTATTCAGATTCTGATGGTGAAGTCATGTTTTTCCGACAACGTGAGGGTCCGTTTATTCCATCGCTGAGATTACTTCATAAATATCCTTTCATCCTACCTCATTTACAAGTTGACAAAGGTGCTATCAAGCATGTTTTAAATGGATCAAATATTATGTGTCGTGGATTGACATCACCCGGTGCTCGAATGACAGAAGTTCCTCAAGAGTCAGTTGTTGCTGTAATGGCAGAAGGCAACACAAATGCACTCGCAGTTGGCATTACTCTGTTATCGACTGATGAGATCTTATCAACCAACAGTGGCATTGGGGTCAAAAATGTACATTATTTGAATGATGGATTATGGCGTCTTAAAGGCGTACGATAATTGACTTTGTTAAAAGAACTCTAAGTACATTCTTATTTGTACATAGACCTTGNGATCACTTNCTTGAAATGA TTCTAATGTACTTGCCGAAGTGAT ATATCCTGAGTTTAT AATAAAC ]
[-] EMBL CD075196             [                                                                                                                                                                                TAATGCGAAGAACTCTATCGTGAAATCTTTGCGTACTCGACTAACTGAAGGTTATGGCATTGATAGTAAAATGGTTGATCAGATTTTACCTAAGAAAGATGTTGTAAAACACATTAAGTGTCACGAACATGTCGACTTGTATTCAGATTCTGATGGTGAAGTCATGTTTTTCCGACAACGTGAGGGTCCGTTTATTCCATCGCTGAGATTACTTCATAAATATCCTTTCATCCTACCTCATTTACAAGTTGACAAAGGTGCTATCAAGCATGTTTTAAATGGATCAAATATTATGTGTCGTGGATTGACATCACCCGGTGCTCGAATGACAGAAGTTCCTCAAGAGTCAGTTGTTGCTGTAATGGCAGAAGGCAAAACAAATGCACTCGCAGTTGGCATTACTCTGTTATCGACTGATGAGATCTTATCAACCAACAGTGGCATTGGGGTCAAAAATGTACATTATTTGAATGATGGATTATGGCGTCTTAAAGGCGTACGATAATTGACTTTGTTAAAAGAACTCTAAGTACATTCTTATTTGTACATAGACCTTGTGATCACTTCCTTG AATGATTTCTAATGTACTTGCCGAAGTGATAATAT CTGAGTTTATAAATAAACT]
[-] EMBL CD159944             [                                                                                                                                                                                                                                                                                                                                                       TTTTCCGACAACGTGAGGGTCCGTTTATTCCATCGCTGAGATTACTTCATAAATATCCTTTCATCCTACCTCATTTACAAGTTGACAAAGGTGCTATCAAGCATGTTTTAAATGGATCAAATATTATGTGTCGTGGATTGACATCACCCGGTGCTCGAATGACAGAAGTTCCTCAAGAGTCAGTTGTTGCTGTAATGGCAGAAGGCAAAACAAATGCACTCGCAGTTGGCATTACTC                                                                                                                                                                                                                               ]




>consensus_7619#0
GAGGCCAANAATGCGGCACGAGGCACAAAAGTACTTACTGACTGGACAGAAACCGCAGCA
GCTGACTTTCGTCCCTTTTTCTTGGTTCATCTGACCTCACTACAATACAAATTACTGCCA
ATAAAACTACACATGTTCAAAAAGTTTGACGAAAAGGAGGATATTTCCTGTACAAATAAT
GCGAAGAACTCTATCGTGAAATCTTTGCGTACTCGACTAACTGAAGGTTATGGCATTGAT
AGTAAAATGGTTGATCAGATTTTACCTAAGAAAGATGTTGTAAAACACATTAAGTGTCAC
GAACATGTCGACTTGTATTCAGATTCTGATGGTGAAGTCATGTTTTTCCGACAACGTGAG
GGTCCGTTTATTCCATCGCTGAGATTACTTCATAAATATCCTTTCATCCTACCTCATTTA
CAAGTTGACAAAGGTGCTATCAAGCATGTTTTAAATGGATCAAATATTATGTGTCGTGGA
TTGACATCACCCGGTGCTCGAATGACAGAAGTTCCTCAAGAGTCAGTTGTTGCTGTAATG
GCAGAAGGCAAAACAAATGCACTCGCAGTTGGCATTACTCTGTTATCGACTGATGAGATC
TTATCAACCAACAGTGGCATTGGGGTCAAAAATGTACATTATTTGAATGATGGATTATGG
CGTCTTAAAGGCGTACGATAATTGACTTTGTTAAAAGAACTCTAAGTACATTCTTATTTG
TACATAGACCTTGNGATCACTTNCTTGAAATGATTCTAATGTACTTGCCGAAGTGATATA
TCCTGAGTTTATAATAAACT

consensusID : consensus_7619#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 665
fasta sequence

                              [AGTCCTAAGCTGTGTGGTGGTTTGAACTTTTCTCTCTAACTTTTGATTTATCCGATTTTCTTAGTCCTAGGGTTATGTTTTTACTGCTCATTGTCAATCTCTTTTTACTATTGAGTGTAAGTGGATCGTTTGTGCTTGCTGTATCGTCGACTCACCTAACCTTACGTTCTTTTTTCAAACACTCCAAGCTATTTCGTGTGCTCTCCTAGTACAAAAAGTACTTACTGACTGGACAGAAACCGCAGCAGCTGACTTTCGTCCCTTTTTCATGGTTCATCTGACCTCACTACAATACAAATTACTGCCAATAAAACTACACATGTTCAAAAAGTTTGACGAAAAGGAGGATATTTCCTGTACAAATAATGCGAAGAACTCTATCGTGAAATCTTTGCGTACTCGACTAACTGAAGGTTATGGCATTGATAGTAAAATGGTTGATCAGATTTTACCTAAGAAAGATGTTGTAAAACACATTAAGTGTCACGAACATGTCGACTTGTATTCAGATTCTGATGGTGAAGTCATGTTTTTCCGACAACGTGAGGGTCCGTTTATTCCATCGCTGAGATTACTTCATAAATGTAAGTAGTTTCTGGTTGTGATCCCCCACGTAATATATGATGATGAATCACATTTGTGAGTGTATTGGTTGATTTATAACT]

[+] EMBL CD089317             [AGTCCTAAGCTGTGTGGTGGTTTGAACTTTTCTCTCTAACTTTTGATTTATCCGATTTTCTTAGTCCTAGGGTTATGTTTTTACTGCTCATTGTCAATCTCTTTTTACTATTGAGTGTAAGTGGATCGTTTGTGCTTGCTGTATCGTCGACTCACCTAACCTTACGTTCTTTTTTCAAACACTCCAAGCTATTTCGTGTGCTCTCCTAGTACAAAAAGTACTTACTGACTGGACAGAAACCGCAGCAGCTGACTTTCGTCCCTTTTTCATGGTTCATCTGACC                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD083507             [                                                                                                                                                                                   cgaggagAGCTATTCCGTGTGCTCTCCTAGTACAAAAAGTACTTACTGACTGGACAGAAACCGCAGCAGCTGACTTTCGTCCCTTTTTCTTGGTTCATCTGACCTCACTACAATACAAATTACTGCCAATAAAACTACACATGTTCAAAAAGTTTGACGAAAAGGAGGATATTTCCTGTACAAATAATGCGAAGAACTCTATCGTGAAATCTTTGCGTACTCGACTAACTGAAGGTTATGGCATTGATAGTAAAATGGTTGATCAGATTTTACCTAAGAAAGATGTTGTAAAACACATTAAGTGTCACGAACATGTCGACTTGTATTCAGATTCTGATGGTGAAGTCATGTTTTTCCGACAACGTGAGGGTCCGTTTATTCCATCGCTGAGATTACTTCATAAATGTAAGTAGTTTCTGGTTGTGATCCCCCACGTAATATATGATGATGAATCACATTTGTGAGTGTATTGGTTGATTTATAACT]




>consensus_7619#1
AGTCCTAAGCTGTGTGGTGGTTTGAACTTTTCTCTCTAACTTTTGATTTATCCGATTTTC
TTAGTCCTAGGGTTATGTTTTTACTGCTCATTGTCAATCTCTTTTTACTATTGAGTGTAA
GTGGATCGTTTGTGCTTGCTGTATCGTCGACTCACCTAACCTTACGTTCTTTTTTCAAAC
ACTCCAAGCTATTTCGTGTGCTCTCCTAGTACAAAAAGTACTTACTGACTGGACAGAAAC
CGCAGCAGCTGACTTTCGTCCCTTTTTCATGGTTCATCTGACCTCACTACAATACAAATT
ACTGCCAATAAAACTACACATGTTCAAAAAGTTTGACGAAAAGGAGGATATTTCCTGTAC
AAATAATGCGAAGAACTCTATCGTGAAATCTTTGCGTACTCGACTAACTGAAGGTTATGG
CATTGATAGTAAAATGGTTGATCAGATTTTACCTAAGAAAGATGTTGTAAAACACATTAA
GTGTCACGAACATGTCGACTTGTATTCAGATTCTGATGGTGAAGTCATGTTTTTCCGACA
ACGTGAGGGTCCGTTTATTCCATCGCTGAGATTACTTCATAAATGTAAGTAGTTTCTGGT
TGTGATCCCCCACGTAATATATGATGATGAATCACATTTGTGAGTGTATTGGTTGATTTA
TAACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7619#0      ------------------------------------------------------------
consensus_7619#1      AGTCCTAAGCTGTGTGGTGGTTTGAACTTTTCTCTCTAACTTTTGATTTATCCGATTTTC 60
                                                                                  

consensus_7619#0      ------------------------------------------------------------
consensus_7619#1      TTAGTCCTAGGGTTATGTTTTTACTGCTCATTGTCAATCTCTTTTTACTATTGAGTGTAA 120
                                                                                  

consensus_7619#0      ------------------------------------------------------------
consensus_7619#1      GTGGATCGTTTGTGCTTGCTGTATCGTCGACTCACCTAACCTTACGTTCTTTTTTCAAAC 180
                                                                                  

consensus_7619#0      -------GAGGCCAANAATGCGGCACGAGGCACAAAAGTACTTACTGACTGGACAGAAAC 53
consensus_7619#1      ACTCCAAGCTATTTCGTGTGCTCTCCTAGTACAAAAAGTACTTACTGACTGGACAGAAAC 240
                             *          ***    * **    ***************************

consensus_7619#0      CGCAGCAGCTGACTTTCGTCCCTTTTTCTTGGTTCATCTGACCTCACTACAATACAAATT 113
consensus_7619#1      CGCAGCAGCTGACTTTCGTCCCTTTTTCATGGTTCATCTGACCTCACTACAATACAAATT 300
                      **************************** *******************************

consensus_7619#0      ACTGCCAATAAAACTACACATGTTCAAAAAGTTTGACGAAAAGGAGGATATTTCCTGTAC 173
consensus_7619#1      ACTGCCAATAAAACTACACATGTTCAAAAAGTTTGACGAAAAGGAGGATATTTCCTGTAC 360
                      ************************************************************

consensus_7619#0      AAATAATGCGAAGAACTCTATCGTGAAATCTTTGCGTACTCGACTAACTGAAGGTTATGG 233
consensus_7619#1      AAATAATGCGAAGAACTCTATCGTGAAATCTTTGCGTACTCGACTAACTGAAGGTTATGG 420
                      ************************************************************

consensus_7619#0      CATTGATAGTAAAATGGTTGATCAGATTTTACCTAAGAAAGATGTTGTAAAACACATTAA 293
consensus_7619#1      CATTGATAGTAAAATGGTTGATCAGATTTTACCTAAGAAAGATGTTGTAAAACACATTAA 480
                      ************************************************************

consensus_7619#0      GTGTCACGAACATGTCGACTTGTATTCAGATTCTGATGGTGAAGTCATGTTTTTCCGACA 353
consensus_7619#1      GTGTCACGAACATGTCGACTTGTATTCAGATTCTGATGGTGAAGTCATGTTTTTCCGACA 540
                      ************************************************************

consensus_7619#0      ACGTGAGGGTCCGTTTATTCCATCGCTGAGATTACTTCATAAATATCCTTTCATCCTACC 413
consensus_7619#1      ACGTGAGGGTCCGTTTATTCCATCGCTGAGATTACTTCATAAATGTAAGTAGTTTCTGGT 600
                      ******************************************** *   *   * **   

consensus_7619#0      TC--ATTTACAAGTTGACAAAGGTGCTATCAAGCATGTTT-TAAATGGATCAAATATTAT 470
consensus_7619#1      TGTGATCCCCCACGTAATATATG-ATGATGAATCACATTTGTGAGTGTATTGGTTGATTT 659
                      *   **   * *  * * * * *    ** ** **  *** * * ** **    *  * *

consensus_7619#0      GTGTCGTGGATTGACATCACCCGGTGCTCGAATGACAGAAGTTCCTCAAGAGTCAGTTGT 530
consensus_7619#1      ATAACT------------------------------------------------------ 665
                       *  *                                                       

consensus_7619#0      TGCTGTAATGGCAGAAGGCAAAACAAATGCACTCGCAGTTGGCATTACTCTGTTATCGAC 590
consensus_7619#1      ------------------------------------------------------------
                                                                                  

consensus_7619#0      TGATGAGATCTTATCAACCAACAGTGGCATTGGGGTCAAAAATGTACATTATTTGAATGA 650
consensus_7619#1      ------------------------------------------------------------
                                                                                  

consensus_7619#0      TGGATTATGGCGTCTTAAAGGCGTACGATAATTGACTTTGTTAAAAGAACTCTAAGTACA 710
consensus_7619#1      ------------------------------------------------------------
                                                                                  

consensus_7619#0      TTCTTATTTGTACATAGACCTTGNGATCACTTNCTTGAAATGATTCTAATGTACTTGCCG 770
consensus_7619#1      ------------------------------------------------------------
                                                                                  

consensus_7619#0      AAGTGATATATCCTGAGTTTATAATAAACT 800
consensus_7619#1      ------------------------------