cluster # 7626

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Schistosoma mansoni
cluster # 7626 cluster # 7626 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7626#0 length = 913 sequences # 4

consensus_7626#1 length = 271 sequences # 1

consensusID : consensus_7626#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 913
fasta sequence

                              [AGAAAAGCAGCTTAGATTCCTCTCCTGAATTCCATAGTCCTGGACATTATAATATGGAAAGCAGGATAGAATCTGTTACTCCTTTACTTCATCGATTTCCATACTCTATTGTATGGACTCCAATTCCCTTGTTAACATGGTTTTTTCCTGTAATTGGACATATGGGAATCGCTAATTCATATGGTATTATATATGATTTTGCAGCCCCTTATACTATTGGGGAAGACCAAATGGCTTTTGGATGGCCAACGATGTATTATCAGCCCCATGCTAGGCTGATAGGCAGTCGAGAGATCTGGGACAACGCTATCTCTGAAGCGAATGAAGCACTCTGGGGACGCGTGCATAACCTTTTTTGTGATAATTGCCATAGTCATGTGGCACATGCTTTCAACAAAATGCGATTTCAAGATAAAGAGAATTGGAATATGTTCAGTGTTGCTGTATTATTATTCTTTCATGGAAAGTATGTTAGTAAACGTCACTGTTTTACATCATGGTTTCCATTCATGATTGTCGTATGTGTAATTTTGGCAATCATATCAATTATTTTACATATCCATTGAATCTCACTTATAACCATCATATACAAACACTCAGATTATACTTGAGACTGATCTAATTCAACTTTTTTTTAGTTTAACCCTATTTATTGTAAAATATGTCATTTGTGTTTTCTAATGTAGTAGATCACCACACTAGCCTTTTTATTTGATTTTATGATTCCTCCACATATAATTAATATCCTTGTTACAGGTGTGTTTACTCGTTCTTCCCAGCTTTATGATGAAACAGTTATCATTGATGCCGAATATTTTAACAAAAAACAGCCAAATTTTCTTTCACATATATATCAATGTGACTAAAATTTTATTTAAAAGAACTTGTTTTCTGATATCGGTATAAAAATAAT]

[+] EMBL CD079284             [AGAAAAGCAGCTTAGATTCCTCTCCTGAATTCCATAGTCCTGGACATTATAATATGGAAAGCAGGATAGAATCTGTTACTCCTTTACTTCATCGATTTCCATACTCTATTGTATGGACTCCAATTCCCTTGTTAACATGGTTTTTTCCTGTAATTGGACATATGGGAATCGCTAATTCATATGGTATTATATATGATTTTGCAGCCCCTTATACTATTGGGGAAGACCAAATGGCTTTTGGATGGCCAACGATGTATTATCAGCCCCATGCTAGGCTGATAGGCAGTCGAGAGATCTGGGACAACGCTATCTCTGAAGCGAATGAAGTTTACAAAGGACGCGTGCATAACCTTTTTTGTGATAATTGCCATAGTCATGTGGCACATGCTTTCAACAAAATGCGATTTCAAGATAAAGAGAATTGGAATATGTTCAGTGTTGCTGTATTATTATTCTTTCATGGAAAGTATGTTAGTAAACGTCACTGTTTTACATCATGGTTTCCATTCATGATTGTCGTATGTGTAATTTTGGCAATCATATCAATTATTTTACATATCCATTGAATCTCACTTATAACCATCATATACAAACACTCAGATTATACTTGAGACTGATCTAATTCAACTTTTTTTTAGTTTAACCCTATTTATTG NAAATAT                                                                                                                                                                                                                                                          ]
[+] EMBL CD185666             [                                                                                                                                                                                                                                                                                                                                       CACTCTGGGGACGCGTGCATAACCTTTTTTGTGATAATTGCCATAGTCATGTGGCACATGCTTTCAACAAAATGCGATTTCAAGATAAAGAGAATTGGAATATGTTCAGTGTTGCTGTATTATTATTCTTTCATGGAAAGTATGTTAGTAAACGTCACTGTTTTACATCATGGTTTCCATTCATGATTGTCGTATGTGTAATTTTGGCAATCATATCAATTATTTTACATATCCATTGAATCTCACTTATAACCATCATATACAAACACTCAGATTATACTTGAGACTGATCTAATTCAACTTTTTTTTAGTTTAACCCTATTTATTGTAAAATATGTCATTTGTGTTTTCTAATGTAGTAGATCACCACACTAGCCTTTTTATTTGATTTTATGATTCCTCCACATATAATTAATATCCTTGTTACAGGTGTGTTT                                                                                                                                                     ]
[+] EMBL CD185885             [                                                                                                                                                                                                                                                                                                                                       CACTCTGGGGACGCGTGCATAACCTTTTTTGTGATAATTGCCATAGTCATGTGGCACATGCTTTCAACAAAATGCGATTTCAAGATAAAGAGAATTGGAATATGTTCAGTGTTGCTGTATTATTATTCTTTCATGGAAAGTATGTTAGTAAACGTCACTGTTTTACATCATGGTTTCCATTCATGATTGTCGTATGTGTAATTTTGGCAATCATATCAATTATTTTACATATCCATTGAATCTCACTTATAACCATCATATACAAACACTCAGATTATACTTGAGACTGATCTAATTCAACTTTTTTTTAGTTTAACCCTATTTATTGTAAAATATGTCATTTGTGTTTTCTAATGTAGTAGATCACCACACTAGCCTTTTTATTTGATTTTATGATTCCTCCACATATAATTAATATCCTTGTTACAGGTGTGTTT                                                                                                                                                     ]
[-] EMBL AI976599             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TTATTCTTTCATGGAAAGTATGTTAGTAAACGTCACTGTTTTACATCATGGTTTCCATTCATGATTGTCGTATGTGTAATTTTGGCAATCATATCAATTATTTTACATATCCATTGAATCTCACTTATAACCATCATATACAAACACTCAGATTATACTTGAGACTGATCTAATTCAACTTTTTTTTAGTTTAACCCTATTTATTGTAAAATATGTCATTTGTGTTTTCTAATGTAGTAGATCACCACACTAGCCTTTTTATTTGATTTTATGATTCCTCCACATATAATTAATATCCTTGTTACAGGTGTGTTTACTCGTTCTTCCCAGCTTTATGATGAAACAGTTATCATTGATGCCGAATATTTTAACAAAAAACAGCCAAATTTTCTTTCACATATATATCAATGTGACTAAAATTTTATTTAAAAGAACTTGTTTTCTGATATCGGTATAAAAATAAT]




>consensus_7626#0
AGAAAAGCAGCTTAGATTCCTCTCCTGAATTCCATAGTCCTGGACATTATAATATGGAAA
GCAGGATAGAATCTGTTACTCCTTTACTTCATCGATTTCCATACTCTATTGTATGGACTC
CAATTCCCTTGTTAACATGGTTTTTTCCTGTAATTGGACATATGGGAATCGCTAATTCAT
ATGGTATTATATATGATTTTGCAGCCCCTTATACTATTGGGGAAGACCAAATGGCTTTTG
GATGGCCAACGATGTATTATCAGCCCCATGCTAGGCTGATAGGCAGTCGAGAGATCTGGG
ACAACGCTATCTCTGAAGCGAATGAAGCACTCTGGGGACGCGTGCATAACCTTTTTTGTG
ATAATTGCCATAGTCATGTGGCACATGCTTTCAACAAAATGCGATTTCAAGATAAAGAGA
ATTGGAATATGTTCAGTGTTGCTGTATTATTATTCTTTCATGGAAAGTATGTTAGTAAAC
GTCACTGTTTTACATCATGGTTTCCATTCATGATTGTCGTATGTGTAATTTTGGCAATCA
TATCAATTATTTTACATATCCATTGAATCTCACTTATAACCATCATATACAAACACTCAG
ATTATACTTGAGACTGATCTAATTCAACTTTTTTTTAGTTTAACCCTATTTATTGTAAAA
TATGTCATTTGTGTTTTCTAATGTAGTAGATCACCACACTAGCCTTTTTATTTGATTTTA
TGATTCCTCCACATATAATTAATATCCTTGTTACAGGTGTGTTTACTCGTTCTTCCCAGC
TTTATGATGAAACAGTTATCATTGATGCCGAATATTTTAACAAAAAACAGCCAAATTTTC
TTTCACATATATATCAATGTGACTAAAATTTTATTTAAAAGAACTTGTTTTCTGATATCG
GTATAAAAATAAT

consensusID : consensus_7626#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 271
fasta sequence

                              [ATGGAAAGCAGGATAGAATCTGTTACTCCTTTACTTCATCGATTTCCATACTCTATTGTATGGACTCCAATTCCCTTGTTAACGTATGCTGTTATATGTGCTAACATCACTACTAATGAAGATGGTTTTTTCCTGTAATTGGACATATGGGAATCGCTAATTCATATGGTATTATATATGATTTTGCAGCCCCTTATACTATTGGGGAAGACCAAATGGCTTTTGGATGGCCAACGATGTATTATCAGCCCCATGCTAGGCTGATAGGCAG]

[-] EMBL CD188777             [ATGGAAAGCAGGATAGAATCTGTTACTCCTTTACTTCATCGATTTCCATACTCTATTGTATGGACTCCAATTCCCTTGTTAACGTATGCTGTTATATGTGCTAACATCACTACTAATGAAGATGGTTTTTTCCTGTAATTGGACATATGGGAATCGCTAATTCATATGGTATTATATATGATTTTGCAGCCCCTTATACTATTGGGGAAGACCAAATGGCTTTTGGATGGCCAACGATGTATTATCAGCCCCATGCTAGGCTGATAGGCAG]




>consensus_7626#1
ATGGAAAGCAGGATAGAATCTGTTACTCCTTTACTTCATCGATTTCCATACTCTATTGTA
TGGACTCCAATTCCCTTGTTAACGTATGCTGTTATATGTGCTAACATCACTACTAATGAA
GATGGTTTTTTCCTGTAATTGGACATATGGGAATCGCTAATTCATATGGTATTATATATG
ATTTTGCAGCCCCTTATACTATTGGGGAAGACCAAATGGCTTTTGGATGGCCAACGATGT
ATTATCAGCCCCATGCTAGGCTGATAGGCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7626#0      AGAAAAGCAGCTTAGATTCCTCTCCTGAATTCCATAGTCCTGGACATTATAATATGGAAA 60
consensus_7626#1      -----------------------------------------------------ATGGAAA 7
                                                                           *******

consensus_7626#0      GCAGGATAGAATCTGTTACTCCTTTACTTCATCGATTTCCATACTCTATTGTATGGACTC 120
consensus_7626#1      GCAGGATAGAATCTGTTACTCCTTTACTTCATCGATTTCCATACTCTATTGTATGGACTC 67
                      ************************************************************

consensus_7626#0      CAATTCCCTTGTTAAC--------------------------------------ATGGTT 142
consensus_7626#1      CAATTCCCTTGTTAACGTATGCTGTTATATGTGCTAACATCACTACTAATGAAGATGGTT 127
                      ****************                                      ******

consensus_7626#0      TTTTCCTGTAATTGGACATATGGGAATCGCTAATTCATATGGTATTATATATGATTTTGC 202
consensus_7626#1      TTTTCCTGTAATTGGACATATGGGAATCGCTAATTCATATGGTATTATATATGATTTTGC 187
                      ************************************************************

consensus_7626#0      AGCCCCTTATACTATTGGGGAAGACCAAATGGCTTTTGGATGGCCAACGATGTATTATCA 262
consensus_7626#1      AGCCCCTTATACTATTGGGGAAGACCAAATGGCTTTTGGATGGCCAACGATGTATTATCA 247
                      ************************************************************

consensus_7626#0      GCCCCATGCTAGGCTGATAGGCAGTCGAGAGATCTGGGACAACGCTATCTCTGAAGCGAA 322
consensus_7626#1      GCCCCATGCTAGGCTGATAGGCAG------------------------------------ 271
                      ************************                                    

consensus_7626#0      TGAAGCACTCTGGGGACGCGTGCATAACCTTTTTTGTGATAATTGCCATAGTCATGTGGC 382
consensus_7626#1      ------------------------------------------------------------
                                                                                  

consensus_7626#0      ACATGCTTTCAACAAAATGCGATTTCAAGATAAAGAGAATTGGAATATGTTCAGTGTTGC 442
consensus_7626#1      ------------------------------------------------------------
                                                                                  

consensus_7626#0      TGTATTATTATTCTTTCATGGAAAGTATGTTAGTAAACGTCACTGTTTTACATCATGGTT 502
consensus_7626#1      ------------------------------------------------------------
                                                                                  

consensus_7626#0      TCCATTCATGATTGTCGTATGTGTAATTTTGGCAATCATATCAATTATTTTACATATCCA 562
consensus_7626#1      ------------------------------------------------------------
                                                                                  

consensus_7626#0      TTGAATCTCACTTATAACCATCATATACAAACACTCAGATTATACTTGAGACTGATCTAA 622
consensus_7626#1      ------------------------------------------------------------
                                                                                  

consensus_7626#0      TTCAACTTTTTTTTAGTTTAACCCTATTTATTGTAAAATATGTCATTTGTGTTTTCTAAT 682
consensus_7626#1      ------------------------------------------------------------
                                                                                  

consensus_7626#0      GTAGTAGATCACCACACTAGCCTTTTTATTTGATTTTATGATTCCTCCACATATAATTAA 742
consensus_7626#1      ------------------------------------------------------------
                                                                                  

consensus_7626#0      TATCCTTGTTACAGGTGTGTTTACTCGTTCTTCCCAGCTTTATGATGAAACAGTTATCAT 802
consensus_7626#1      ------------------------------------------------------------
                                                                                  

consensus_7626#0      TGATGCCGAATATTTTAACAAAAAACAGCCAAATTTTCTTTCACATATATATCAATGTGA 862
consensus_7626#1      ------------------------------------------------------------
                                                                                  

consensus_7626#0      CTAAAATTTTATTTAAAAGAACTTGTTTTCTGATATCGGTATAAAAATAAT 913
consensus_7626#1      ---------------------------------------------------