These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7630#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence [CGAGCTCGGTACCCTTCTGTGATGAATGGGTTTTACGGGATTTTCGTTTGATAAAGTGCTTTCAGAAGCAGCTGATGATGAGGGAGAAGGATCGAACCATAAATGAGAATAACTGAGTAAATGAGATGATCCAATCAGTTGGTTCAAGCAACTAACAACACCAAGCTGGAAAAAAAGCTTTTAAAAATGATAAAAATACACTATAAATATTCAGGGACAATTACTTAGAGTAAAATTGGACATTTATCGGAATTATTTCGACTATAATCAAAATTTAAAAGGAATAACTCAACATTACATAAGTGAGCTCTAGATCGTTAGATCTTTGAGAGAGAGTTGGGAACCCATCTAGACTTATCTAGGAAAACGATATCATAAGCACAAGGACAGATTTTATATGTGCTCAATTTCGCCGCTTATAACGTAGACAAGATGTTCGCAGTTCTGTAAGTGAGCGATAATTCTGTTCAGGAGCTCATCATATACTGGCTTAGCGGTGTGAATTACGGCCACTGAATGCTGAAGTTGTTTGTATGTTATGAGCCTTAGGCTGTAGATATCATAGAAATATTGCTTGCTTATGGTAGGGGATGTTGATGTTAGGGTGTCATAGTAAAGTGGTAGATTACCTGAGAAACTGGTAGACCTC] [+] EMBL CD129109 [CGAGCTCGGTACCCTTCTGTGATGAATGGGTTTTACGGGATTTTCGTTTGATAAAGTGCTTTCAGAAGCAGCTGATGATGAGGGAGAAGGATCGAACCATAAATGAGAATAACTGAGTAAATGAGATGATCCAATCAGTTGGTTCAAGCAACTAACAACACCAAGCTGGAAAAAAAGCTTTTAAAAATGATAAAAATACACTATAAATATTCAGGGACAATTACTTAGAGTAAAATTGGACATTTATCGGAATTATTTCGACTATAATCAAAATTTAAAAGGAATAACTCAACATTACATAAGTGAGCTCTAGATCGTTAGATCTTTGAGAGAGAGTTGGGAACCCATCTAGACTTATCTAGGAAAACGATATCATAAGCACAAGGACAGATTTTATATGTGCTCAATTTCGCCGCTTATAACGTAGACAAGATGTTCGCAGTTCTGTAAGTGAGCGATAATTCTGTTCAGGAGCTCATCATATACTGGCTTAGCGGTGTGAATTACGGCCACTGAATGCTGAAGTTGTTTGTATGTTATGAGCCTTAGGCTGTAGATATCATAGAAATATTGCTTGCTTATGGTAGGGGATGTTGATGTTAGGGTGTCATAGTAAAGTGGTAGATTACCTGAGAAACTGGTAGACCTC] consensusID : consensus_7630#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 369 fasta sequence [AGAGATAGACGTGATCTACGGTGAATGGGTTTTACGGGATTTTCGTTTGATAAAGTGCTTTCAGAAGCAGCTGATGATGAGGGAGAAGGATCGAACCATAAATGAGAATAACTGAGTAAATGAGATGATCCAATCAGTTGGTTCAAGCAACTAACAACACCAAGCAGCATATAGCGATCTTCAGGTAAAAAACTAGAACACGGCAATTCCATTAGAGCAGTCAAACATTTACGGAAGAGACATGCAGTTCCTGTGCTACTTAGATAAAAATCAGTGACTTGGTTACTTATTTCATTGTGTTCTGCCTCTAAATACAATAACTGTGACATTTGTGATTGATAAAACTGCCGTCCAATAGGTCCTCCTGTC] [-] EMBL CD086036 [AGAGATAGACGTGATCTACGGTGAATGGGTTTTACGGGATTTTCGTTTGATAAAGTGCTTTCAGAAGCAGCTGATGATGAGGGAGAAGGATCGAACCATAAATGAGAATAACTGAGTAAATGAGATGATCCAATCAGTTGGTTCAAGCAACTAACAACACCAAGCAGCATATAGCGATCTTCAGGTAAAAAACTAGAACACGGCAATTCCATTAGAGCAGTCAAACATTTACGGAAGAGACATGCAGTTCCTGTGCTACTTAGATAAAAATCAGTGACTTGGTTACTTATTTCATTGTGTTCTGCCTCTAAATACAATAACTGAGACATTTGTGATTGATAAAACTGCCGTCCAATAGGTCCTCCTGTC] [-] EMBL CD086201 [ AGACGTGATCTACGGTGAATGGGTTTTACGGGATTTTCGTTTGATAAAGTGCTTTCAGAAGCAGCTGATGATGAGGGAGAAGGATCGAACCATAAATGAGAATAACTGAGTAAATGAGATGATCCAATCAGTTGGTTCAAGCAACTAACAACACCAAGCAGCATATAGCGATCTTCAGGTAAAAAACTAGAACACGGCAATTCCATTAGAGCAGTCAAACATTTACGGAAGAGACATGCAGTTCCTGTGCTACTTAGATAAAAATCAGTGACTTGGTTACTTATTTCATTGTGCTCTGCCTCTAAATACAATAACTGTGACATTTGTGATTGATAAAACTGCCG ] [-] EMBL CD086220 [ AGACGTGATCTACGGTGAATGGGTTTTACGGGATTTTCGTTTGATAAAGTGCTTTCAGAAGCAGCTGATGATGAGGGAGAAGGATCGAACCATAAATGAGAATAACTGAGTAAATGAGATGATCCAATCAGTTGGTTCAAGCAACTAACAACACCAAGCAGCATATAGCGATCTTCAGGTAAAAAACTAGAACACGGCAATTCCATTAGAGCAGTCAAACATTTACGGAAGAGACATGCAGTTCCTGTGCTACTTAGATAAAAATCAGTGACTTGGTTACTTATTTCATTGTGTTCTGCCTCTAAATACAATAACTGTGACATTTGTGATTGATAAAACTGCCG ] [-] EMBL CD085988 [ AGACGTGATCTACGGTGAATGGGTTTTACGGGATTTTCGTTTGATAAAGTGCGTTCAGAAGCAGCTGATGATGAGGGAGAAGGATCGAACCATAAATGAGAATAACTGAGTAAATGAGATGATCCAATCAGTTGGTTCAAGCAACTAACAACACCAAGCAGCATATAGCGATCTTCAGGTAAAAAACTAGAACACGGCAATTCCATTAGAGCAGTCAAACATTTACGGAAGAGACATGCAGTTCCTGTGCTACTTAGATAAAAATCAGTGACTTGGTTACTTATTTCATTGTGTTCTGCCTCTAAATACAATAACTGTGACATTTGTGATTGATAAAACTGCCG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7630#0 CGAGCTCGGTACCCTTCTGTGATGAATGGGTTTTACGGGATTTTCGTTTGATAAAGTGCT 60 consensus_7630#1 AGAGATAGACGTGAT-CTACGGTGAATGGGTTTTACGGGATTTTCGTTTGATAAAGTGCT 59 *** * * * ** * ************************************** consensus_7630#0 TTCAGAAGCAGCTGATGATGAGGGAGAAGGATCGAACCATAAATGAGAATAACTGAGTAA 120 consensus_7630#1 TTCAGAAGCAGCTGATGATGAGGGAGAAGGATCGAACCATAAATGAGAATAACTGAGTAA 119 ************************************************************ consensus_7630#0 ATGAGATGATCCAATCAGTTGGTTCAAGCAACTAACAACACCAAGCTGGAAAAAAAGCTT 180 consensus_7630#1 ATGAGATGATCCAATCAGTTGGTTCAAGCAACTAACAACACCAAGCAGCATATAGCGATC 179 ********************************************** * * * * * * consensus_7630#0 TTAA---AAATGATAAAAATACACTATAAATATTCAGGGA--CAATTACTTAGAGTAAAA 235 consensus_7630#1 TTCAGGTAAAAAACTAGAACACGGCAATTCCATTAGAGCAGTCAAACATTTACGGAAGAG 239 ** * *** * * ** ** * *** * * *** * *** * * * consensus_7630#0 TTGGACATTTATCGGAATTATTTCGACTATAATCAAAATTTAAAAGGAATAACTCA--AC 293 consensus_7630#1 ACATGCAGTT-CCTGTGCTACTTAGATAAAAATCAGTGACTTGGTTACTTATTTCATTGT 298 ** ** * * ** ** ** * ***** * ** *** consensus_7630#0 ATTACATAAGTGAGCTCTA-GATCGTTAGATCTTTGA--GAGAGAGTTGGGAACCCATCT 350 consensus_7630#1 GTTCTGCCTCTAAATACAATAACTGTGACATTTGTGATTGATAAAACTGCCGTCCAATAG 358 ** * * * * * ** * ** * *** ** * * ** ** ** consensus_7630#0 AGACTTATCTAGGAAAACGATATCATAAGCACAAGGACAGATTTTATATGTGCTCAATTT 410 consensus_7630#1 GTCCTCCTGTC------------------------------------------------- 369 ** * * consensus_7630#0 CGCCGCTTATAACGTAGACAAGATGTTCGCAGTTCTGTAAGTGAGCGATAATTCTGTTCA 470 consensus_7630#1 ------------------------------------------------------------ consensus_7630#0 GGAGCTCATCATATACTGGCTTAGCGGTGTGAATTACGGCCACTGAATGCTGAAGTTGTT 530 consensus_7630#1 ------------------------------------------------------------ consensus_7630#0 TGTATGTTATGAGCCTTAGGCTGTAGATATCATAGAAATATTGCTTGCTTATGGTAGGGG 590 consensus_7630#1 ------------------------------------------------------------ consensus_7630#0 ATGTTGATGTTAGGGTGTCATAGTAAAGTGGTAGATTACCTGAGAAACTGGTAGACCTC 649 consensus_7630#1 ----------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||