cluster # 7631

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Schistosoma mansoni
cluster # 7631 cluster # 7631 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7631#0 length = 1060 sequences # 4

consensus_7631#1 length = 389 sequences # 1

consensusID : consensus_7631#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1060
fasta sequence

                              [TAGAGTTGAGCGAGCTAGTTCATGTGCCGCTATCTTCTGCTAATCTTGCCGCCTACATCCCAAGTTCTTTTACCCTGTCACAACTTGTAAAATTAGGTGTTAATTTATCCAAGGTTGAAGCTGTTCCAGGTGTTGCAAATATGTTGGTGAAGCTTGATTTTCATAATGACATTGAACCTATACTATGGGGACTTTCAGACTTTGGATTTAAACCTAAACAAATCGCTCGGATTATTACGGCGTTCCCAAAAATACTTAAACTACCACTGATTTTAAGTCCATACTTTTTAGCTACCACTGTGCGAAATCAGTGCACGATTAACTTATTTTACAGACCGGAAGGTTTCGTCTACAGATGTTGTAACAATGATCTGCCGAGTTCCTAACATACTCGAGAAACCGCCCATGGAAATAGATAAAAATCTTGGTCAAATAAAGTCACTCATACAGTTAAAAAGTAATTTAACTGCTTATTATTTCCTCTTAATTGCTTTAGATTCAGAGGTTGTTGAAGTAATCACGACGGAACCCAAAATCATTACACACCCGCTACCAAAAATTAAGGATATTTTTGTTGTACTGTCAAAAATGATGGGATTTTCACAGTCAGCTATACATAAATTAGTTCTTACTAGCCCGAAATTATTGATAACAGAACGTGAGCATCTGTCAAACAACTTCAAAATTATGCATTGGCATCTTAATCTTCCAGTCGATCTCATACAAATATGGCCAGAAGCTTTATCTGCAGCACCGCATTTACTGCATCAACGATGCACATTTCTCGTGCATCGAAAGTTGTTTCAGCCAGATCCAACCAAACCCCTATATACACCCCTCAGTTCTATAGTTTTACAAGACGACGATGAATTTTGTCGAAAATACGGATTTACTACAGAAGAGGATTACGACAATTTTCTGCGAACTCTGTGAAATTAGTTTTCATCTTGTACATAAATGAAAGTGTAAATGATTCTTGATATTAAAGTCATCTTTAGTCTTTATGAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTAGTACTGC]

[+] EMBL CD078003             [TAGAGTTGAGCGAGCTAGTTCATGTGCCGCTATCTTCTGCTAATCTTGCCGCCTACATCCCAAGTTCTTTTACCCTGTCACAACTTGTAAAATTAGGTGTTAATTTATCCAAGGTTGAAGCTGTTCCAGGTGTTGCAAATATGTTGGTGAAGCTTGATTTTCATAATGACATTGAACCTATACTATGGGGACTTTCAGACTTTGGATTTAAACCTAAACAAATCGCTCGGATTATTACGGCGTTCCCAAAAATACTTAAACTACCACTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD079054             [                                                                               ACAACTTGTAAAATTAGGTGTTAATTTATCCAAGGTTGAAGCTGTTCCAGGTGTTGCAAATATGTTGGTGAAGCTTGATTTTCATAATGACATTGAACCTATACTATGGGGACTTTCAGACTTTGGATTTAAACCTAAACAAATCGCTCGGATTATTACGGCGTTCCCAAAAATACTTAAAGTACGACTTATTTTAAGTCCATACTTTTTAGCTACCACTGTGCGAAATCAGTGCACGATTAACTTATTTTACAGACCGGAAGGTTTCGTCTACAGATGTTGTAACAATGATCTGCCGAGTTCCTAACATACTCGAGAAACCGCCCATGGAAATAGATAAAAATCTTGGTCAAATAAAGTCACTCATACAGTTAAAAAGTAATTTAACTGCTTATTATTTCCTCTTAATTGCTTTAGATTCAGAGGTTGTTGAAGTAATCACGACGGAACCCAAAATCATTACACACCCGCTACCAAAAATTAAGGATATTTTTGTTGTACTGTCAAAAATGATGGGATTTTCACAGTCAGCTATACATAAATTAGTTCTTACTAGCCCGAAATTATTGATAACAGAACGTGAGCATCTGTCANACAACTTC AAATTATGCATTGGCATCTTAATCTTCCAGTCGATCTCATACAAAT                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD073508             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CTTAATTGCTTTAGATTCAGAGGTTGTTGAAGTAATCACGACGGAACCCAAAATCATTACACACCCGCTACCAAAAATTAAGGATATTTTTGTTGTACTGTCAAAAATGATGGGATTTTCACAGTCAGCTATACATAAATTAGTTCTTACTAGCCCGAAATTATTGATAACAGAACGTGAGCATCTGTCAAACAACTTCAAAATTATGCATTGGCATCTTAATCTTCCAGTCGATCTCATACAAATATGGCCAGAAGCTTTATCTGCAGCACCGCATTTACTGCATCAACGATGCACATTTCTCGTGCATCGAAAGTTGTTTCAGCCAGATCCAACCAAACCCCTATATACACCCCTCAGTTCTATAGTTTTACAAGACGACGATGAATTTTGTCGAAAATACGGATTTACTACAGAAGAGGATTACGACAATTTTCTGCGAACTCTGTGAAATTAGTTTTCATCTTGTACATAAATGAAAGTGTAAATGATT                                                                                     ]
[-] EMBL AI976929             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CAAAAATGATGGGATTTTCACAGTCAGCTATACATAAATTAGTTCTTACTAGACCGAAATTATTGATAACAGAACGTGAGCATCTGTCAAACAACTTCAAAATTATGCATTGGCATCTTAATCTTCCAGTCGATCTCATACAAATATGGCCAGAAGCTTTATCTGCAGCACCGCATTTACTGCATCAACGATGCACATTTCTCGTGCATCGAAAGTTGTTTCAGCCAGATCCAACCAAACCCCTATATACACCCCTCAGTTCTATAGTTTTACAAGACGACGATGAATTTTGTCGAAAATACGGATTTACTACAGAAGAGGATTTCGACAATTTTCTGCGAACTCTGTGAAATTAGTTTTCATCTTGTACATAAATGAAAGTGTAAATGATTCTTGATATTAAAGTCATCTTTAGTCTTTATGAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTAGTACTGC]




>consensus_7631#0
TAGAGTTGAGCGAGCTAGTTCATGTGCCGCTATCTTCTGCTAATCTTGCCGCCTACATCC
CAAGTTCTTTTACCCTGTCACAACTTGTAAAATTAGGTGTTAATTTATCCAAGGTTGAAG
CTGTTCCAGGTGTTGCAAATATGTTGGTGAAGCTTGATTTTCATAATGACATTGAACCTA
TACTATGGGGACTTTCAGACTTTGGATTTAAACCTAAACAAATCGCTCGGATTATTACGG
CGTTCCCAAAAATACTTAAACTACCACTGATTTTAAGTCCATACTTTTTAGCTACCACTG
TGCGAAATCAGTGCACGATTAACTTATTTTACAGACCGGAAGGTTTCGTCTACAGATGTT
GTAACAATGATCTGCCGAGTTCCTAACATACTCGAGAAACCGCCCATGGAAATAGATAAA
AATCTTGGTCAAATAAAGTCACTCATACAGTTAAAAAGTAATTTAACTGCTTATTATTTC
CTCTTAATTGCTTTAGATTCAGAGGTTGTTGAAGTAATCACGACGGAACCCAAAATCATT
ACACACCCGCTACCAAAAATTAAGGATATTTTTGTTGTACTGTCAAAAATGATGGGATTT
TCACAGTCAGCTATACATAAATTAGTTCTTACTAGCCCGAAATTATTGATAACAGAACGT
GAGCATCTGTCAAACAACTTCAAAATTATGCATTGGCATCTTAATCTTCCAGTCGATCTC
ATACAAATATGGCCAGAAGCTTTATCTGCAGCACCGCATTTACTGCATCAACGATGCACA
TTTCTCGTGCATCGAAAGTTGTTTCAGCCAGATCCAACCAAACCCCTATATACACCCCTC
AGTTCTATAGTTTTACAAGACGACGATGAATTTTGTCGAAAATACGGATTTACTACAGAA
GAGGATTACGACAATTTTCTGCGAACTCTGTGAAATTAGTTTTCATCTTGTACATAAATG
AAAGTGTAAATGATTCTTGATATTAAAGTCATCTTTAGTCTTTATGAAAAAAAAAAAAAA
AAAAAAAAAAAAACATGCCATGCAGCTGCATTAGTACTGC

consensusID : consensus_7631#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 389
fasta sequence

                              [AAATTGCTACAAAAACAGATAAAAGCCTACCTACACCCTAGCCCAACACCAAAAGAAAGCATAGAAATATTATCCCAGTGGTTTAAGGAGTTAGAGTTGAGCGAGCTAGTTCATGTGCTGCTATCTTCTGCTAATCTTGCCGCCTACATCCCAAGTTCTTTTACCCTGTCACAACTTGTAAAATTAGGTGTTAATTTATCCAAGGTTGAAGCTGTTCCAGGTGTTGCAAATATGTTGGTGAAGCTTGATTTTCATAATGACATTGAACCTATACTATGGGGACTTTCAGACTTTGGATTTAAACCTAAACAAATCGCTCGGATTATTACGGCGTTCCCAAAAATACTTAAACTACCACTGTGCGAAATCAGTGCACGATTAACTTATTT]

[+] EMBL CD126575             [AAATTGCTACAAAAACAGATAAAAGCCTACCTACACCCTAGCCCAACACCAAAAGAAAGCATAGAAATATTATCCCAGTGGTTTAAGGAGTTAGAGTTGAGCGAGCTAGTTCATGTGCTGCTATCTTCTGCTAATCTTGCCGCCTACATCCCAAGTTCTTTTACCCTGTCACAACTTGTAAAATTAGGTGTTAATTTATCCAAGGTTGAAGCTGTTCCAGGTGTTGCAAATATGTTGGTGAAGCTTGATTTTCATAATGACATTGAACCTATACTATGGGGACTTTCAGACTTTGGATTTAAACCTAAACAAATCGCTCGGATTATTACGGCGTTCCCAAAAATACTTAAACTACCACTGTGCGAAATCAGTGCACGATTAACTTATTT]




>consensus_7631#1
AAATTGCTACAAAAACAGATAAAAGCCTACCTACACCCTAGCCCAACACCAAAAGAAAGC
ATAGAAATATTATCCCAGTGGTTTAAGGAGTTAGAGTTGAGCGAGCTAGTTCATGTGCTG
CTATCTTCTGCTAATCTTGCCGCCTACATCCCAAGTTCTTTTACCCTGTCACAACTTGTA
AAATTAGGTGTTAATTTATCCAAGGTTGAAGCTGTTCCAGGTGTTGCAAATATGTTGGTG
AAGCTTGATTTTCATAATGACATTGAACCTATACTATGGGGACTTTCAGACTTTGGATTT
AAACCTAAACAAATCGCTCGGATTATTACGGCGTTCCCAAAAATACTTAAACTACCACTG
TGCGAAATCAGTGCACGATTAACTTATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7631#0      ------------------------------------------------------------
consensus_7631#1      AAATTGCTACAAAAACAGATAAAAGCCTACCTACACCCTAGCCCAACACCAAAAGAAAGC 60
                                                                                  

consensus_7631#0      -------------------------------TAGAGTTGAGCGAGCTAGTTCATGTGCCG 29
consensus_7631#1      ATAGAAATATTATCCCAGTGGTTTAAGGAGTTAGAGTTGAGCGAGCTAGTTCATGTGCTG 120
                                                     *************************** *

consensus_7631#0      CTATCTTCTGCTAATCTTGCCGCCTACATCCCAAGTTCTTTTACCCTGTCACAACTTGTA 89
consensus_7631#1      CTATCTTCTGCTAATCTTGCCGCCTACATCCCAAGTTCTTTTACCCTGTCACAACTTGTA 180
                      ************************************************************

consensus_7631#0      AAATTAGGTGTTAATTTATCCAAGGTTGAAGCTGTTCCAGGTGTTGCAAATATGTTGGTG 149
consensus_7631#1      AAATTAGGTGTTAATTTATCCAAGGTTGAAGCTGTTCCAGGTGTTGCAAATATGTTGGTG 240
                      ************************************************************

consensus_7631#0      AAGCTTGATTTTCATAATGACATTGAACCTATACTATGGGGACTTTCAGACTTTGGATTT 209
consensus_7631#1      AAGCTTGATTTTCATAATGACATTGAACCTATACTATGGGGACTTTCAGACTTTGGATTT 300
                      ************************************************************

consensus_7631#0      AAACCTAAACAAATCGCTCGGATTATTACGGCGTTCCCAAAAATACTTAAACTACCACTG 269
consensus_7631#1      AAACCTAAACAAATCGCTCGGATTATTACGGCGTTCCCAAAAATACTTAAACTACCAC-- 358
                      **********************************************************  

consensus_7631#0      ATTTTAAGTCCATACTTTTTAGCTACCACTGTGCGAAATCAGTGCACGATTAACTTATTT 329
consensus_7631#1      -----------------------------TGTGCGAAATCAGTGCACGATTAACTTATTT 389
                                                   *******************************

consensus_7631#0      TACAGACCGGAAGGTTTCGTCTACAGATGTTGTAACAATGATCTGCCGAGTTCCTAACAT 389
consensus_7631#1      ------------------------------------------------------------
                                                                                  

consensus_7631#0      ACTCGAGAAACCGCCCATGGAAATAGATAAAAATCTTGGTCAAATAAAGTCACTCATACA 449
consensus_7631#1      ------------------------------------------------------------
                                                                                  

consensus_7631#0      GTTAAAAAGTAATTTAACTGCTTATTATTTCCTCTTAATTGCTTTAGATTCAGAGGTTGT 509
consensus_7631#1      ------------------------------------------------------------
                                                                                  

consensus_7631#0      TGAAGTAATCACGACGGAACCCAAAATCATTACACACCCGCTACCAAAAATTAAGGATAT 569
consensus_7631#1      ------------------------------------------------------------
                                                                                  

consensus_7631#0      TTTTGTTGTACTGTCAAAAATGATGGGATTTTCACAGTCAGCTATACATAAATTAGTTCT 629
consensus_7631#1      ------------------------------------------------------------
                                                                                  

consensus_7631#0      TACTAGCCCGAAATTATTGATAACAGAACGTGAGCATCTGTCAAACAACTTCAAAATTAT 689
consensus_7631#1      ------------------------------------------------------------
                                                                                  

consensus_7631#0      GCATTGGCATCTTAATCTTCCAGTCGATCTCATACAAATATGGCCAGAAGCTTTATCTGC 749
consensus_7631#1      ------------------------------------------------------------
                                                                                  

consensus_7631#0      AGCACCGCATTTACTGCATCAACGATGCACATTTCTCGTGCATCGAAAGTTGTTTCAGCC 809
consensus_7631#1      ------------------------------------------------------------
                                                                                  

consensus_7631#0      AGATCCAACCAAACCCCTATATACACCCCTCAGTTCTATAGTTTTACAAGACGACGATGA 869
consensus_7631#1      ------------------------------------------------------------
                                                                                  

consensus_7631#0      ATTTTGTCGAAAATACGGATTTACTACAGAAGAGGATTACGACAATTTTCTGCGAACTCT 929
consensus_7631#1      ------------------------------------------------------------
                                                                                  

consensus_7631#0      GTGAAATTAGTTTTCATCTTGTACATAAATGAAAGTGTAAATGATTCTTGATATTAAAGT 989
consensus_7631#1      ------------------------------------------------------------
                                                                                  

consensus_7631#0      CATCTTTAGTCTTTATGAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGC 1049
consensus_7631#1      ------------------------------------------------------------
                                                                                  

consensus_7631#0      ATTAGTACTGC 1060
consensus_7631#1      -----------