cluster # 7635

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Schistosoma mansoni
cluster # 7635 cluster # 7635 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7635#0 length = 457 sequences # 4

consensus_7635#1 length = 279 sequences # 1

consensusID : consensus_7635#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 457
fasta sequence

                              [ACCGTCTCTATTTAAGCACTATCGCGATTATCATTATTACCTACTACTATTATTATTATTAGCAGTAGTAGTATCTAAGGTAATAAATATTGTATTGACCTTTTATTGGGTTCAATGAGTACAGTATGAGTACATTTTTGAAACCATGTCAACAAAACAATGTCCTCGGTAACTTTCTTTTCCTCCTCAAGGAATCATCCCCATTGTACACAGCTTTTGTTGCCTCATATATAGATATATTCAAG-AATTCTTTATAATGATGCCTTTACAATTGAATTCATTATTATTATGATTGTATGTGTCTNCCTTGTACTTCTACTTTATTATTGGTATAGTCAATTCATTGAATAAGTTAAATGATCAAATTTTTTTTCTCTTTTTTCATTCTGGTTTATAGTTTATTTATTGGTTAAACAATTCAAATG-AGCGACGTTTCATTTTAAAGT-CGCGCCATGTT]

[+] EMBL AI111165             [ACCGTCTCTATTTAAGCACTATCGCGATTATCATTATTACCTACTACTATTATTATTATTAGCAGTAGTAGTATCTAAGGTAATAAATATTGTATTGACCTTTTATTGGGTTCAATGAGTACAGTATGAGTACATTTTTGAAACCATGTCAACAAAACAATGTCCTCGGTAACTTTCTTTTCCTCCTCAAGGAATCATCCCCATTGTACACAGCTTTTGTTGCCNCATNTTTAGATATATTCCAGAAATTCTTTATAATGATGCCTTTACAATTGAATTCATTATTATTATGATTGTNTGTGTCTNCCTTGTACTTCTACTTTATTATTGGTATAGTCAATTCATTGAATAAGTTAAATGATCAAATTTTTTTTCTCTTTTTTCATTCTGGTTTATAGTTTATTTATTGGTTAAACAA TCCAATG AGCGACGTTTCATTTTAAAGTCCGC CCATGT ]
[+] EMBL AI110901             [ CCGTCTCTATTTAAGCACTATCGCGATTATCATTATTACCTACTACTATTATTATTATTAGCAGTAGTAGTATCTAAGGTAATAAATATTGTATTGACCTTTTATTGGGTTCAATGAGTACAGTATGAGTACATTTTTGAAACCATGTCAACAAAACAATGTCCTCGGTAACTTTCTTTTCCTCCTCAAGGAATCATCCCCATTGTACACAGCTTTTGTTGCCTCATATATAGATATATTCAAG AATTCTTTATAATGATGCCTTTACAATTGAATTCATTATTATTATGATTGTATGTGTCTTCCTTGTACTTCTACTTTATTATTGGTATAGTCAATTCATTGAATAAGTTAAATGATCAAATTTTTTTTCTCTTTTTTCATTCTGGTTTATAGTTTATTTATTGGTTAAACAATTCAAATGAAGCGACGTTTCATTTTAAAGT CGCGCCATGTT]
[+] EMBL AI111024             [ CCGTCTCTATTTAAGCACTATCGCGATTATCATTATTACCTACTACTATTATTATTATTAGCAGTAGTAGTATCTAAGGTAATAAATATTGTATTGACCTTTTATTGGGTTCAATGAGTACAGTATGAGTACATTTTTGAAACCATGTCAACAAAACAATGTCCTCGGTAACTTTCTTTTCCTCCTCAAGGAATCATCCCCATTGTACACAGCTTTTGTTGCCTCATATATAGATATATTCAAG AATTCTTTATAATGATGCCTTTACAATTGAATTCATTATTATTATGATTGTATGTGTCTNCCTTGTACTTCTACTTTATTATTGGTATAGTCAATTCATTGAATAAGTTAAATGATCAAATTTTTTTNCTCTTTTTTCATTCTGGTTTATAGTTTATTTATTGGTTAAACAATTCAAATG AGCGACGTTTCATTTTAAAGT CGCGCCATG  ]
[+] EMBL AI111067             [ CCGTCTCTATTTAAGCACTATCGCGATTATCATTATTACCTACTACTATTATTATTATTAGCAGTAGTAGTATCTAAGGTAATAAATATTGTATTGACCTTTTATTGGGTTCAATGAGTACAGTATGAGTACATTTTTGAAACCATGTCAACAAAACAATGTCCTCGGTAACTTTCTTTTCCTCCTCAAGGAATCATCCCCATTGTACACAGCTTTTGTTGCCTCATATATAGATATATTCAAG AATTCTTTATAATGATGCCTTTACAATTGAATTCATTATTATTATGATTGTATGTGTCTTCCTTGTACTTCTACTTTATTATTGGTATAGTCAATTCATTGAATAAGTTAAATGATCAAA TTTTTTTCTCTTTTTTCATTCTGGTTTATAGTTTATTTATTGGT                                                 ]




>consensus_7635#0
ACCGTCTCTATTTAAGCACTATCGCGATTATCATTATTACCTACTACTATTATTATTATT
AGCAGTAGTAGTATCTAAGGTAATAAATATTGTATTGACCTTTTATTGGGTTCAATGAGT
ACAGTATGAGTACATTTTTGAAACCATGTCAACAAAACAATGTCCTCGGTAACTTTCTTT
TCCTCCTCAAGGAATCATCCCCATTGTACACAGCTTTTGTTGCCTCATATATAGATATAT
TCAAGAATTCTTTATAATGATGCCTTTACAATTGAATTCATTATTATTATGATTGTATGT
GTCTNCCTTGTACTTCTACTTTATTATTGGTATAGTCAATTCATTGAATAAGTTAAATGA
TCAAATTTTTTTTCTCTTTTTTCATTCTGGTTTATAGTTTATTTATTGGTTAAACAATTC
AAATGAGCGACGTTTCATTTTAAAGTCGCGCCATGTT

consensusID : consensus_7635#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 279
fasta sequence

                              [CCGTCTCTNTTTAAGCACTATCGCGATTATCATTATTACCNACTACTATTATTATNATTAGCAGTAGTANTATCTAAGGTAATAAATATTGTNTTGACCNTTTATTGGGTTCAACGAGTACAGTATGAGTNCATTTTTGAAACCATGTCAACAAAACAATNTCCTCGGTAACTTNCTTTCCCTCCTCAAGGAATCNTCCCCATNGTACNCAGCTTTTGTCGCCTCATATATANATATTTTCAANAATTCTTTATAATGATGCCTCTACAATCGAATTCA]

[+] EMBL AI111087             [CCGTCTCTNTTTAAGCACTATCGCGATTATCATTATTACCNACTACTATTATTATNATTAGCAGTAGTANTATCTAAGGTAATAAATATTGTNTTGACCNTTTATTGGGTTCAACGAGTACAGTATGAGTNCATTTTTGAAACCATGTCAACAAAACAATNTCCTCGGTAACTTNCTTTCCCTCCTCAAGGAATCNTCCCCATNGTACNCAGCTTTTGTCGCCTCATATATANATATTTTCAANAATTCTTTATAATGATGCCTCTACAATCGAATTCA]




>consensus_7635#1
CCGTCTCTNTTTAAGCACTATCGCGATTATCATTATTACCNACTACTATTATTATNATTA
GCAGTAGTANTATCTAAGGTAATAAATATTGTNTTGACCNTTTATTGGGTTCAACGAGTA
CAGTATGAGTNCATTTTTGAAACCATGTCAACAAAACAATNTCCTCGGTAACTTNCTTTC
CCTCCTCAAGGAATCNTCCCCATNGTACNCAGCTTTTGTCGCCTCATATATANATATTTT
CAANAATTCTTTATAATGATGCCTCTACAATCGAATTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7635#0      ACCGTCTCTATTTAAGCACTATCGCGATTATCATTATTACCTACTACTATTATTATTATT 60
consensus_7635#1      -CCGTCTCTNTTTAAGCACTATCGCGATTATCATTATTACCNACTACTATTATTATNATT 59
                       ******** ******************************* ************** ***

consensus_7635#0      AGCAGTAGTAGTATCTAAGGTAATAAATATTGTATTGACCTTTTATTGGGTTCAATGAGT 120
consensus_7635#1      AGCAGTAGTANTATCTAAGGTAATAAATATTGTNTTGACCNTTTATTGGGTTCAACGAGT 119
                      ********** ********************** ****** ************** ****

consensus_7635#0      ACAGTATGAGTACATTTTTGAAACCATGTCAACAAAACAATGTCCTCGGTAACTTTCTTT 180
consensus_7635#1      ACAGTATGAGTNCATTTTTGAAACCATGTCAACAAAACAATNTCCTCGGTAACTTNCTTT 179
                      *********** ***************************** ************* ****

consensus_7635#0      TCCTCCTCAAGGAATCATCCCCATTGTACACAGCTTTTGTTGCCTCATATATAGATATAT 240
consensus_7635#1      CCCTCCTCAAGGAATCNTCCCCATNGTACNCAGCTTTTGTCGCCTCATATATANATATTT 239
                       *************** ******* **** ********** ************ **** *

consensus_7635#0      TCAAGAATTCTTTATAATGATGCCTTTACAATTGAATTCATTATTATTATGATTGTATGT 300
consensus_7635#1      TCAANAATTCTTTATAATGATGCCTCTACAATCGAATTCA-------------------- 279
                      **** ******************** ****** *******                    

consensus_7635#0      GTCTNCCTTGTACTTCTACTTTATTATTGGTATAGTCAATTCATTGAATAAGTTAAATGA 360
consensus_7635#1      ------------------------------------------------------------
                                                                                  

consensus_7635#0      TCAAATTTTTTTTCTCTTTTTTCATTCTGGTTTATAGTTTATTTATTGGTTAAACAATTC 420
consensus_7635#1      ------------------------------------------------------------
                                                                                  

consensus_7635#0      AAATGAGCGACGTTTCATTTTAAAGTCGCGCCATGTT 457
consensus_7635#1      -------------------------------------