|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7638#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1143 fasta sequence
[AAATTTTGTCCTATTTGTATGGTTTTTTTAACAGTCACCAAATTTACGATTCCATAAAGAGATCAATAAATAATTTTATAAAAAAAATGCAATATTTAAAAGGGTAAATAAAATCTGCAGATAAAACAATCTACAGACCTATCACCAGTTGACAACAATAATTAGATTAAATTCTCCAGTGAGTCACTATAAAAGTAATTAAAATCTAACCGTGACAATAACTTATTTAAATCTGTTGTGCCCGAATAGTGAGGACCATTGGTAGTAGTAATACCAGGTAACGATAGCGATTCGAAGTCTCGATGATGATTAACAACAGTATAGCCAGAATTGAAACCAACACTACTTTTAGCACCGGTTGAACAAGAAATATTCAATAAATCATACAATAATTTTGCTTGAGTATAGAATTTATTCACCATCTCTTGCACTTTATCAGACAATTGATGGTTGTGGTCATCATCCATATTCATTAAATGATCATAGTAGTATTGTTGATTTGATAAATCCACAAATTGACAGCAATAGTTTAACAACTGCAATATACATAATTTTATATCTGGATGAACAATAATGCTTGCGCTTGTAAACCAGCCAGGTAAGCTTCTTGTGCGATTTGAATTAATCGAATTTCTTGATCAATATGTAAACGACGAATTAAGTGTGAAAATTGTGCTTCAATTACATCAACCTGTAAATAATACTGTAAACTGTCAATAATAAATGCCATATGACTACGAACTAGGAGGCGTTGATCTATACAAGACTGCAATTGAATAAAAACATTGATTGGTGCTTTATTATAATTTACATGGAGCTGATTACGAGCAGAGGTACGACGCCACAAAAGAATTTGATCAGCCCAAAACTCTTGTAATTTCAATTGTGTTCGACGGATAGCGAATAGAAATCTAAATAACCTGTCGTAAGCACGACAAATATTAGGAGAGAATAAACGTTCGAACACCGGTGGAGCAATAATGCATAAATGTAAACGATCCAAAACAGTAATATTTTCTGACAATTTATTTGATTGAGCTGCTGCCAACTTTATTGAGAATCTAAAGAACGAGCTGCTGCCAGAAACGCCTCAGTAACATCGTATTCAAGAGCCTGAACTGCACTTTCATTTGTTGNGGGAGG]
[+] EMBL CD077333 [AAATTTTGTCCTATTTGTATGGTTTTTTTAACAGTCACCAAATTTACGATTCCATAAAGAGATCAATAAATAATTTTATAAAAAAAATGCAATATTTAAAAGGGTAAATAAAATCTGCAGATAAAACAATCTACAGACCTATCACCAGTTGACAACAATAATTAGATTAAATTCTCCAGTGAGTCACTATAAAAGTAATTAAAATCTAACCGTGACAATAACTTATTTAAATCTGTTGTGCCCGAATAGTGAGGACCATTGGTAGTAGTAATACCAGGTAACGATAGCGATTCGAAGTCTCGATGATGATTAACAACAGTATAGCCAGAATTGAAACCAACACTACTTTTAGCACCGGTTGAACAAGAAATATTCAATAAATCATACAATAATTTTGCTTGAGTATAGAATTTATTCACCATCTCTTGCACTTTATCAGACAATTGATGGTTGTGGTCATCATCCATATTCATTAAATGATCATAGTAGTATTGTTGATTTGATAAATCCACAAATTGACAGCAATAGTTTAACAACTGCAATATACATAATTTTATATCTGGATGAACAATAATGCTTGCGCTTGTAAACCAGCCAGGTAAGCTTCTTGTGCGATTTGAATTAATCGAATTTCTTGATCAATATGTAAACGACGAATTAAGTGTGAAAATTGTGCTTCAATTACATCAACCTGTA ]
[+] EMBL CD159331 [ ACCAGCCAGGTAAGCTTCTTGTGCGATTTGAATTAATCGAATTTCTTGGTCAATATGTAAACGACGAATTAAGTGTGAAAATTGTGCTTCAATTACATCAACCTGTAAATAATACTGTAAACTGTCAATAATAAATGCCATATGACTACGAACTAGGAGGCGTTGATCTATACAAGACTGCAATTGAATAAAAACATTGATTGGTGCTTTATTATAATTTACATGGAGCTGATTACGAGCAGAGGTACGACGCCACAAAAGAATTTGATCAGCCCAAAACTCTTGTAATTTCAATTGTGTTCGACGGATAGCGAATAGAAATCTAAATAACCTGTCGTAAGCACGACAAATATTAGGAGAGAATAAACGTTCGAACACCGGTGGAGCAATAATGCATAAATGTAAACGATCCAAAACAGTAATATTTTCTGACAATTTATTTGATTGAGCTGCTGCCAACTTTATTGAGAATCTAAAGAACGAGCTGCTGCCAGAAACGCCTCAGTAACATCGTATTCAAGAGCCTGAACTGCACTTTCATTTGTTGNGGGAGG]
consensusID : consensus_7638#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 449 fasta sequence
[GAACACAAAAATCCTCGTGACTACTGAGAATTATAAGTCAATCATTACATATATACTCATTTGGCAAAAATAAGAGCAGTTTGAAATAGAAGTAACATAACACTACAAAATTGTTGATATACACTTGAGAAATTCAATATTACACGGTGACATACTTAAAATTGGAATCTAGTTCTTCATCATCCATACCTAAAGAACGAGCTGCTGCCAGAAACGCCTCAGTAACATCGTATTCAAGAGCCTGAACTGCACTTTCATTTGTTGGGGGAGGTTTGTCTAAAATGCTATGCTGAATTTTACAAGTGGTTCCACAACGTGAATTATTAATGTTGCTGAGATTATTTGAAATATTTAAATGATCAAGGAATGCCAAGAATAATTCGCCTCTTCCTAAAAGTAGGACATCTTTAACTAAGCAAATATATTGAATTAATTTGTGTTCTTTCAAT]
[+] EMBL CD170220 [GAACACAAAAATCCTCGTGACTACTGAGAATTATAAGTCAATCATTACATATATACTCATTTGGCAAAAATAAGAGCAGTTTGAAATAGAAGTAACATAACACTACAAAATTGTTGATATACACTTGAGAAATTCAATATTACACGGTGACATACTTAAAATTGGAATCTAGTTCTTCATCATCCATACCTAAAGAACGAGCTGCTGCCAGAAACGCCTCAGTAACATCGTATTCAAGAGCCTGAACTGCACTTTCATTTGTTGGGGGAGGTTTGTCTAAAATGCTATGCTGAATTTTACAAGTGGTTCCACAACGTGAATTATTAATGTTGCTGAGATTATTTGAAATATTTAAATGATCAAGGAATGCCAAGAATAATTCGCCTCTTCCTAAAAGTAGGACATCTTTAACTAAGCAAATATATTGAATTAATTTGTGTTCTTTCAAT]
consensusID : consensus_7638#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence
[CATATACCTTGAACCCCAACANTATGGCTCAATCCAATTCAAGGAACATTATAGATTGGATGCCCTACCTTGATTTGGTCACTCCTAGCTTTTATTTCAACCTATTCCTGTAAATAANACTGTAAACTGTCAATAATAAATGCCATATGACTACGAACTAGGAGGCGTTGATNTATACAAGACTGCAATTGAATAAAAACATTGATTGGTGNTTTATTATAATTTACATGGAGCTGATTACGAGCAGAGGTACGACGCCACAAAAGAATTTGATCAGCCCAAAACTCTTGTAATTTCAATTGTGTTNGACGGATAGCGAATAGAAATCTAAATAACCTGTNGTAAGCACGACAAATATTAGGAGAGAATAAACGTTCGAACACC]
[-] EMBL AI111004 [CATATACCTTGAACCCCAACANTATGGCTCAATCCAATTCAAGGAACATTATAGATTGGATGCCCTACCTTGATTTGGTCACTCCTAGCTTTTATTTCAACCTATTCCTGTAAATAANACTGTAAACTGTCAATAATAAATGCCATATGACTACGAACTAGGAGGCGTTGATNTATACAAGACTGCAATTGAATAAAAACATTGATTGGTGNTTTATTATAATTTACATGGAGCTGATTACGAGCAGAGGTACGACGCCACAAAAGAATTTGATCAGCCCAAAACTCTTGTAATTTCAATTGTGTTNGACGGATAGCGAATAGAAATCTAAATAACCTGTNGTAAGCACGACAAATATTAGGAGAGAATAAACGTTCGAACACC]
consensusID : consensus_7638#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence
[ATAAACGTTCGAACACCGGTGGAGCAATAATGCATAAATGTAAACGATCCAAAACAGTAATATTTTCTGACAATTTATNTGAGTGAGCTGCTGCCAACTTTATTGAGAATTTAAAATTGGAATCTAGTTCTTCATCATCCATACCTAAAGAACGAGCTGCTGCCAGAAACGCCTCAGTAACATCGTATTCAAGAGCCTGAACTGCACTTTCATTTGTTGGGGGAGGTTTGTCTAAAATGCTATGCTGAATTTTACAAGTGGTTCCACAACGTGAATTATTAATGTTGCTG]
[-] EMBL CD070367 [ATAAACGTTCGAACACCGGTGGAGCAATAATGCATAAATGTAAACGATCCAAAACAGTAATATTTTCTGACAATTTATNTGAGTGAGCTGCTGCCAACTTTATTGAGAATTTAAAATTGGAATCTAGTTCTTCATCATCCATACCTAAAGAACGAGCTGCTGCCAGAAACGCCTCAGTAACATCGTATTCAAGAGCCTGAACTGCACTTTCATTTGTTGGGGGAGGTTTGTCTAAAATGCTATGCTGAATTTTACAAGTGGTTCCACAACGTGAATTATTAATGTTGCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7638#1 ------------------------------------------------------------
consensus_7638#3 ------------------------------------------------------------
consensus_7638#0 AAATTTTGTCCTATTTGTATGGTTTTTTTAACAGTCACCAAATTTACGATTCCATAAAGA 60
consensus_7638#2 ------------------------------------------------------------
consensus_7638#1 ------------------------------------------------------------
consensus_7638#3 ------------------------------------------------------------
consensus_7638#0 GATCAATAAATAATTTTATAAAAAAAATGCAATATTTAAAAGGGTAAATAAAATCTGCAG 120
consensus_7638#2 ------------------------------------------------------------
consensus_7638#1 ------------------------------------------------------------
consensus_7638#3 ------------------------------------------------------------
consensus_7638#0 ATAAAACAATCTACAGACCTATCACCAGTTGACAACAATAATTAGATTAAATTCTCCAGT 180
consensus_7638#2 ------------------------------------------------------------
consensus_7638#1 ------------------------------------------------------------
consensus_7638#3 ------------------------------------------------------------
consensus_7638#0 GAGTCACTATAAAAGTAATTAAAATCTAACCGTGACAATAACTTATTTAAATCTGTTGTG 240
consensus_7638#2 ------------------------------------------------------------
consensus_7638#1 ------------------------------------------------------------
consensus_7638#3 ------------------------------------------------------------
consensus_7638#0 CCCGAATAGTGAGGACCATTGGTAGTAGTAATACCAGGTAACGATAGCGATTCGAAGTCT 300
consensus_7638#2 ------------------------------------------------------------
consensus_7638#1 ------------------------------------------------------------
consensus_7638#3 ------------------------------------------------------------
consensus_7638#0 CGATGATGATTAACAACAGTATAGCCAGAATTGAAACCAACACTACTTTTAGCACCGGTT 360
consensus_7638#2 ------------------------------------------------------------
consensus_7638#1 ------------------------------------------------------------
consensus_7638#3 ------------------------------------------------------------
consensus_7638#0 GAACAAGAAATATTCAATAAATCATACAATAATTTTGCTTGAGTATAGAATTTATTCACC 420
consensus_7638#2 ------------------------------------------------------------
consensus_7638#1 ------------------------------------------------------------
consensus_7638#3 ------------------------------------------------------------
consensus_7638#0 ATCTCTTGCACTTTATCAGACAATTGATGGTTGTGGTCATCATCCATATTCATTAAATGA 480
consensus_7638#2 ------------------------------------------------------------
consensus_7638#1 -------------------------------------------------------GAACA 5
consensus_7638#3 ------------------------------------------------------------
consensus_7638#0 TCATAGTAGTATTGTTGATTTGATAAATCCACAAATTGACAGCAATAGTTTAACAACTGC 540
consensus_7638#2 ------------------------------------------------------------
consensus_7638#1 CAAAAATCCTCGTGACTACTGAGAATTATAAGTCAATCATTACATATATACTCATTTGGC 65
consensus_7638#3 ---------------------------ATAAACGTTCGAACACCGGTGGAGCAATAATGC 33
consensus_7638#0 AATATACATAATTTTATATCTGGATGAACAATAATGCTTGCGCTTGTAAACCAGCCAGGT 600
consensus_7638#2 ------------------------------------CATATACCTTGAACCCCAACAN-- 22
*
consensus_7638#1 AAAAATAAGA-GCAGTTTGAAATA-GAAGTAACATAACACTACAAAATTGTTGATATACA 123
consensus_7638#3 ATAAATGTAA-ACGATCCAAAACA-GTAATATTTT----CTGACAATTTATNTGAGTGAG 87
consensus_7638#0 AAGCTTCTTGTGCGATTTGAATTAATCGAATTTCT----TGATCAATATGTAAACGACGA 656
consensus_7638#2 -----TATGGCTCAATCCAATTCAAGGAACATTAT----AGATTGGATGCCCTACCTTGA 73
* * * * * *
consensus_7638#1 CTTGAGAAATTCAATATTACACGGTGACATACTTAAAATTGGAATCTAGTTCTTCATCAT 183
consensus_7638#3 CTGCTG----CCAACTTTAT----TGAGA-ATTTAAAATTGGAATCTAGTTCTTCATCAT 138
consensus_7638#0 ATTAAGTGTGA--AAATTGTGCTTCAATTACATCAACCTGTAAATAATACTGTAAACTGT 714
consensus_7638#2 TTTGGTCACTCCTAGCTTTTATTTCAACC-TATT--CCTGTAAATAANACTGTAAACTGT 130
* * ** * * * *** * * * *
consensus_7638#1 CCATACCTAAAGAACGAGCTGCTGCCAGAAACGCCTCAGTAACATCGTATTCAAGAGCCT 243
consensus_7638#3 CCATACCTAAAGAACGAGCTGCTGCCAGAAACGCCTCAGTAACATCGTATTCAAGAGCCT 198
consensus_7638#0 CAATA----ATAAATGCCATATGACTACGAACTAGGAGGCGTTGATCTATACAAGA-CTG 769
consensus_7638#2 CAATA----ATAAATGCCATATGACTACGAACTAGGAGGCGTTGATNTATACAAGA-CTG 185
* *** * ** * * * * *** * *** ***** *
consensus_7638#1 GAACTGCACTTT--CATTTGTTGGGGGAGGTTTGTCTAAAATGCTATGCTGAATTTTACA 301
consensus_7638#3 GAACTGCACTTT--CATTTGTTGGGGGAGGTTTGTCTAAAATGCTATGCTGAATTTTACA 256
consensus_7638#0 CAATTGAATAAAAACATTGATTGGTGCTTTATTATAATTTACATGGAGCTGATTACGAGC 829
consensus_7638#2 CAATTGAATAAAAACATTGATTGGTGNTTTATTATAATTTACATGGAGCTGATTACGAGC 245
** ** * **** **** * ** * * ***** * *
consensus_7638#1 AGTGGTTCCACAACGTGAATTA--TTAATGTTGCTGAGATTATTTGAAATATTTAAATGA 359
consensus_7638#3 AGTGGTTCCACAACGTGAATTA--TTAATGTTGCTG------------------------ 290
consensus_7638#0 AGAGGTACGACGCCACAAAAGAATTTGATCAGCCCAAAACTCTTGTAATTTCAATTGTGT 889
consensus_7638#2 AGAGGTACGACGCCACAAAAGAATTTGATCAGCCCAAAACTCTTGTAATTTCAATTGTGT 305
** *** * ** * ** * ** ** *
consensus_7638#1 TCAAGGAATGCCAAGAATAATTCGCCTCTTCCTAAAAGTAGGACATCTTTAACTAAGCAA 419
consensus_7638#3 ------------------------------------------------------------
consensus_7638#0 TCGACGGATAGCGAATAGAAATCTAAATAACCTGTCGTAAGCACGACAAATATTAGGAGA 949
consensus_7638#2 TNGACGGATAGCGAATAGAAATCTAAATAACCTGTNGTAAGCACGACAAATATTAGGAGA 365
consensus_7638#1 ATATATTGAATTAATTTGTGTTCTTTCAAT------------------------------ 449
consensus_7638#3 ------------------------------------------------------------
consensus_7638#0 GAATAAACGTTCGAACACCGGTGGAGCAATAATGCATAAATGTAAACGATCCAAAACAGT 1009
consensus_7638#2 GAATAAACGTTCGAACACC----------------------------------------- 384
consensus_7638#1 ------------------------------------------------------------
consensus_7638#3 ------------------------------------------------------------
consensus_7638#0 AATATTTTCTGACAATTTATTTGATTGAGCTGCTGCCAACTTTATTGAGAATCTAAAGAA 1069
consensus_7638#2 ------------------------------------------------------------
consensus_7638#1 ------------------------------------------------------------
consensus_7638#3 ------------------------------------------------------------
consensus_7638#0 CGAGCTGCTGCCAGAAACGCCTCAGTAACATCGTATTCAAGAGCCTGAACTGCACTTTCA 1129
consensus_7638#2 ------------------------------------------------------------
consensus_7638#1 --------------
consensus_7638#3 --------------
consensus_7638#0 TTTGTTGNGGGAGG 1143
consensus_7638#2 --------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||