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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7650#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 737 fasta sequence
[TAATACTTTTATTCTTTATTTACATGACAATGAGAGGTAACTCTCTAAGTTCTGGTCTAGAAGTTGTTACGCGCTACATAACGGGTTGACCCCTACAGCTGTTTCCAGGGCTGCGATGACCTTACTCTGTGGGTTGTGGTTACAGAGGTTGACAAGGAGGTACAGTTTACGCAAGGCCAGATCATTATTGGTCAAGTGAATGTTGGGACAAATGGAGACCAGAGTGTCCACGGCCATCTCGTAGCAGTCCCACTCTTCAATCTCTTCGTGTTTCATCATGACTAGGGAGTAGAGGTGATTCTCTGGCACCTCGCTGTAAACTGTACTAACTATTTGATTGAACAGCTGATTGGTATGAGACATGGTTTGTTTCAATTGATTTAACTTTTCCTCCAAACGAGATCTTTCAAGGGAGTCAGCCGCTGCAGCCAATCTGTTTTCAAGTGTCTTGAGGACAACTAGTTCGCTGGGCACTTGATCTGTTGGAATGGTTCTTTCTGTCTTTTCTGGTAATCTGATTGGTTCTTGATTGTTACCAAANAATTTGTCGAGTGTAAAAGCATCAATGGAGAGGGCTCCATATTGCATCACATGACTCTGGTTGGTCTTGGCCTTGACCTTCTCATATTGGTGGTCTATAGTTTCCCTCGNCAGNACAGCAACATCTGTGTCTTCCATCCAGTTTACACTGTATGTGTCCTCCAGGTAAGCATTTCTCTTACTGTCCCAATAACAGC]
[+] EMBL CD139857 [TAATACTTTTATTCTTTATTTACATGACAATGAGAGGTAACTCTCTAAGTTCTGGTCTAGAAGTTGTTACGCGCTACATAACGGGTTGACCCCTACAGCTGTTTCCAGGGCTGCGATGACCTTACTCTGTGGGTTGTGGTTACAGAGGTTGACAAGGAGGTACAGTTTACGCAAGGCCAGATCATTATTGGTCAAGTGAATGTTGGGACAAATGGAGACCAGAGTGTCCACGGCCATCTCGTAGCAGTCCCACTCTTCAATCTCTTCGTGTTTCATCATGACTAGGGAGTAGAGGTGATTCTCTGGCACCTCGCTGTAAACTGTACTA ]
[+] EMBL CD145040 [ TCTAAGTTCTGGTCTAGAAGTTGTTACGCGCTACATAACGGGTTGACCCCTACAGCTGTTTCCAGGGCTGCGATGACCTTACTCTGTGGGTTGTGGTTACAGAGGTTGACAAGGAGGTACAGTTTACGCAAGGCCAGATCATTATTGGTCAAGTGAATGTTGGGACAAATGGAGACCAGAGTGTCCACGGCCATCTCGTAGCAGTCCCACTCTTCAATCTCTTCGTGTTTCATCATGACTAGGGAGTAGAGGTGATTCTCTGGCACCTCGCTGTAAACTGTACTAACTATTTGATTGAACAGCTGATTGGTATGAGACATGGTTTGTTTCAATTGATTTAACTTTTCCTCCAAACGAGATCTTTCAAGGGAGTCAGCCGCTGCAGCCAATCTGTTTTCAAGTGTCTTGAGGACAACTAGTTCGCTGGGCACTTGATCTGTTGGAATGGTTCTTTCTGTCTTTTCTGGTAATCTGATTGGTTCTTGATTGTTACCAAANAATTTGTCGAGTGTAAAAGCATCAATGGAGAGGGCTCCATATTGCATCACATGACTCTGGTTGGTCTTGGCCTTGACCTTCTCATATTGGTGGTCTATAGTTTCCCTCGNCAGNACAGCAACATCTGTGTCTTCCATCCAGTTTACACTGTATGTGTCCTCCAGGTAAGCATTTCTCTTACTGTCCCAATAACAGC]
[-] EMBL CD138540 [ GTTACGCGCTACATAACGGGTTGACCCCTACAGCTGTTTCCAGGGCTGCGATGACCTTACTCTGTGGGTTGTGGTTACAGAGGTTGACAGGGAGGTACAGTTTACGCAAGGCCAGATCATTATTGGTCAAGTGAATGTTGGGACAAATGGAGACCAGAGTGTCCACGGCCATCTCGTAGCAGTCCCACTCTTCAATCTCTTCGTGTTTCATCATGACTAGGGAGTAGAGGTGATTCTCTGGCACCTCGCTGTAAACTGTACTAACTATTTGATTGAACAGCTGATTGGTATGAGACATGGTTTGTTTCAATTGATTTAACTTTTCCTCCAAACGAGAT ]
[-] EMBL CD145769 [ GACAAATGGAGACCAGAGTGTCCACGGCCATCTCGTAGCAGTCCCACTCTTCAATCTCTTCGTGTTTCATCATGACTAGGGAGTAGAGGTGATTCTCTGGCACCTCGCTGTAAGCTGTACTAACTATTTGATTGAACAGCTGATTGGTATGAGACATGGTTTGTTTCAATTGACTTAACTTTTCCTCCAAACGAGATCTTTCAAGGGAGTCAGCCGCTGCAGCCAATCTGTTTTCAAGTGTCTTGAGGACAACTAGTTCGCTGGGCACTTG ]
consensusID : consensus_7650#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 233 fasta sequence
[CTTCCGCGGGNATTCGATTGAGTAGACCTTGTCCTGGTCTAGAAGTTGTTACGCGCTACATAACGGGTTGACCCCTACAGCTGTTTCCAGGGCTGCGATGACCTTACTCTGTGGGTTGTGGTTACAGAGGTTGACAAGGAGGTACAGTTTACTCTTGGCCAGATCATTATTGGTCAAGTGAATGTGGGGACAAATGGAGACCAGAGTGTCCACGGCCATCTCGTATCAGTCCC]
[+] EMBL CD133128 [CTTCCGCGGGNATTCGATTGAGTAGACCTTGTCCTGGTCTAGAAGTTGTTACGCGCTACATAACGGGTTGACCCCTACAGCTGTTTCCAGGGCTGCGATGACCTTACTCTGTGGGTTGTGGTTACAGAGGTTGACAAGGAGGTACAGTTTACTCTTGGCCAGATCATTATTGGTCAAGTGAATGTGGGGACAAATGGAGACCAGAGTGTCCACGGCCATCTCGTATCAGTCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7650#0 TAATACTTTTATTCTTTATTTACATGACAATGAGAGGTAACTCTCTAAGTTCTGGTCTAG 60
consensus_7650#1 ------------------CTTCCGCGGGNATTCGATTGAGTAGACCTTGTCCTGGTCTAG 42
** * * ** ** * * ** *********
consensus_7650#0 AAGTTGTTACGCGCTACATAACGGGTTGACCCCTACAGCTGTTTCCAGGGCTGCGATGAC 120
consensus_7650#1 AAGTTGTTACGCGCTACATAACGGGTTGACCCCTACAGCTGTTTCCAGGGCTGCGATGAC 102
************************************************************
consensus_7650#0 CTTACTCTGTGGGTTGTGGTTACAGAGGTTGACAAGGAGGTACAGTTTACGCAAGGCCAG 180
consensus_7650#1 CTTACTCTGTGGGTTGTGGTTACAGAGGTTGACAAGGAGGTACAGTTTACTCTTGGCCAG 162
************************************************** * ******
consensus_7650#0 ATCATTATTGGTCAAGTGAATGTTGGGACAAATGGAGACCAGAGTGTCCACGGCCATCTC 240
consensus_7650#1 ATCATTATTGGTCAAGTGAATGTGGGGACAAATGGAGACCAGAGTGTCCACGGCCATCTC 222
*********************** ************************************
consensus_7650#0 GTAGCAGTCCCACTCTTCAATCTCTTCGTGTTTCATCATGACTAGGGAGTAGAGGTGATT 300
consensus_7650#1 GTATCAGTCCC------------------------------------------------- 233
*** *******
consensus_7650#0 CTCTGGCACCTCGCTGTAAACTGTACTAACTATTTGATTGAACAGCTGATTGGTATGAGA 360
consensus_7650#1 ------------------------------------------------------------
consensus_7650#0 CATGGTTTGTTTCAATTGATTTAACTTTTCCTCCAAACGAGATCTTTCAAGGGAGTCAGC 420
consensus_7650#1 ------------------------------------------------------------
consensus_7650#0 CGCTGCAGCCAATCTGTTTTCAAGTGTCTTGAGGACAACTAGTTCGCTGGGCACTTGATC 480
consensus_7650#1 ------------------------------------------------------------
consensus_7650#0 TGTTGGAATGGTTCTTTCTGTCTTTTCTGGTAATCTGATTGGTTCTTGATTGTTACCAAA 540
consensus_7650#1 ------------------------------------------------------------
consensus_7650#0 NAATTTGTCGAGTGTAAAAGCATCAATGGAGAGGGCTCCATATTGCATCACATGACTCTG 600
consensus_7650#1 ------------------------------------------------------------
consensus_7650#0 GTTGGTCTTGGCCTTGACCTTCTCATATTGGTGGTCTATAGTTTCCCTCGNCAGNACAGC 660
consensus_7650#1 ------------------------------------------------------------
consensus_7650#0 AACATCTGTGTCTTCCATCCAGTTTACACTGTATGTGTCCTCCAGGTAAGCATTTCTCTT 720
consensus_7650#1 ------------------------------------------------------------
consensus_7650#0 ACTGTCCCAATAACAGC 737
consensus_7650#1 -----------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||