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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7652#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 826 fasta sequence
[CCANAATTTGGCACGAGGGACCTCATGACTTTTCCAAGGCTGTTTTCTTCGGAGATTCTCTAACGCAGTTTGGTTGGACCCATGAAGGCGGCTGGCTATCGATCCTGGCATCAACTTTTGTCAGGAAGATAGATATTGTTGGAAGAGGTTATTCTGGTTATAACACTCGTTTGTGCAAACCGTTACTTCCAATCCTCTATCCGAATAAGGACTCACTAAAGGATTGTAAATTCTTCACTATTTTTCTCGGAGCTAATGATGCTTGTGTAACTCCACAACAGCATGTACCAGTTGAAGAATACAAAAGTAATCTAAGCTGGATGATTGATTATATTCATAAATTGGACGTGCCTATGGATCACATTTCACTAATCAGTTTACCTCCTATTGATGAGAATAAATGGGGTGCTATTGAAATAGCTAAAGGAAGGGCAATTACACGTAAACTAGATACTTGTGCGACCTATGCAGTTGCATGTCAAGAGGTTGCCAACGTCAATAAAGTTGGTTTTGTGAATTTATATGAAGCTATGTTAATGCANAAGAATTGGGAATCTTTTCTTTCAGACGGTTTACACTTTTCTAGAANAGGATCTGAGTTNTTGGCGAGGATNNTAGAAGAATTACTTATGGGGATAATANGTGACTTTAAGTGGGTGGTTTCGGATTGGAAAGTATAANNCCGACGACCNNAGTGGAGTTATCATCACTATCTTCATCCCAATCTGATNGTTCTGAAATAANGACTNCATGNGACTTACTGACTTACTTNCTAGAANCATGATTNGNTCAGCGACTATTGTCTCTTGAANGNTAACTATGAATN]
[+] EMBL CD079629 [CCANAATTTGGCACGAGGGACCTCATGACTTTTCCAAGGCTGTTTTCTTCGGAGATTCTCTAACGCAGTTTGGTTGGACCCATGAAGGCGGCTGGCTATCGATCCTGGCATCAACTTTTGTCAGGAAGATAGATATTGTTGGAAGAGGTTATTCTGGTTATAACACTCGTTTGTGCAAACCGTTACTTCCAATCCTCTATCCGAATAAGGACTCACTAAAGGATTGTAAATTCTTCACTATTTTTCTCGGAGCTAATGATGCTTGTGTAACTCCACAACAGCATGTACCAGTTGAAGAATACAAAAGTAATCTAAGCTGGATGATTGATTATATTCATAAATTGGACGTGCCTATGGATCACATTTCACTAATCAGTTTACCTCCTATTGATGAGAATAAATGGGGTGCTATTGAAATAGCTAAAGGAAGGGCAATTACACGTAAACTAGATACTTGTGCGACCTATGCAGTTGCATGTCAAGAGGTTGCCAACGTCAATAAAGTTGGTTTTGTGAATTTATATGAAGCTATGTTAATGCANAAGAATTGGGAATCTTTTCTTTCAGACGGTTTACACTTTTCTAGAANAGGATCTGAGTTNTTGGCGAGGATNNTAGAAGAATTACTTATGGGGATAATANGTGACTTTAAGTGGGTGGTTTCGGATTGGAAAGTATAANNCCGACGACCNNAGTGGAGTTATCATCACTATCTTCATCCCAATCTGATNGTTCTGAAATAANGACTNCATGNGACTTACTGACTTACTTNCTAGAANCATGATTNGNTCAGCGACTATTGTCTCTTGAANGNTAACTATGAATN]
consensusID : consensus_7652#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence
[CTCGAGGGCCANAATTCGGCACGAGGAGTAAATGTTCTCAATTTCAAACGTCTCTAAAACAGTAAATCATTATTAGTTGTCACTAACTTTTGTCCTCTAATCTGTCACTCAATTGATCTTTTTCCATTAATAGAAATTGGACGTGCCTATGGATCACATTTCACTAATCAGTTTACCTCCTATTGATGAGAATAAATGGGGTGCTATTNNNNNNNNNNNAGGTGACTCGGAAATTTAGTTTTTTTTATTATATATATGTATAAAGAGCATAGGTTAAATTAAAAATGCTTCGTAAAACGGTCATCAGAGCAGAGATAACGGATTGTATACACGAAAAGTCATAAAGAACACTTATCTTAAACTTCNNNNNNNNTACCCATTTATTTAGTACCTCTTTCTACTGAATTTTAATCAAATTTACGTTAAAAGTCATTTGTATAAGGAATTTGTACTTGTTTTTTTAGGAAGGGCAATTACACGTAAACTAGATACTTGTGCGACCTATGCAGTAAGTTGGTTTTGTGAATTTATATGAAGCTATGTTAATGCAAAAGAATTGGGAATCTTTTCTTTCAGACGGTTTACACTTTTCTAGAAAAGGATCTGAGTTTTTGGCGAGGATTNTA]
[+] EMBL CD080949 [CTCGAGGGCCANAATTCGGCACGAGGAGTAAATGTTCTCAATTTCAAACGTCTCTAAAACAGTAAATCATTATTAGTTGTCACTAACTTTTGTCCTCTAATCTGTCACTCAATTGATCTTTTTCCATTAATAGAAATTGGACGTGCCTATGGATCACATTTCACTAATCAGTTTACCTCCTATTGATGAGAATAAATGGGGTGCTATTNNNNNNNNNNNAGGTGACTCGGAAATTTAGTTTTTTTTATTATATATATGTATAAAGAGCATAGGTTAAATTAAAAATGCTTCGTAAAACGGTCATCAGAGCAGAGATAACGGATTGTATACACGAAAAGTCATAAAGAACACTTATCTTAAACTTCNNNNNNNNTACCCATTTATTTAGTACCTCTTTCTACTGAATTTTAATCAAATTTACGTTAAAAGTCATTTGTATAAGGAATTTGTACTTGTTTTTTTAGGAAGGGCAATTACACGTAAACTAGATACTTGTGCGACCTATGCAGTAAGTTGGTTTTGTGAATTTATATGAAGCTATGTTAATGCAAAAGAATTGGGAATCTTTTCTTTCAGACGGTTTACACTTTTCTAGAAAAGGATCTGAGTTTTTGGCGAGGATTNTA]
consensusID : consensus_7652#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 509 fasta sequence
[TCACATTTCACTAATCAGTTTACCTCCTATTGATGAGAATAAATGGGGTGCTATTGAAATAGCTAAAGGAAGGGCAATTACACGTAAACTAGATACTTGTGCGACCTATGCAGTTGCATGTCAAGAGGTTGCCAACGTCAATAAAGTTGGTTTTGTGAATTTATATGAAGCTATGTTAATGCAAAAGAATTGGGAATCTTTTCTTTCAGACGGTTTACACTTTTTTAGAAAAGGATTTGAGTTTTTGGCGAGGATTTTAGAAGAATTACTTATGGATAAATTAGGTGACTTAAAGTGGTGGTTTCCGGATTGGAAAGTTATAAACCCGAACGACCCAGTGGAGTTTATCAATCACTATCTTCAGTCCCAAATCTGATGTTTTTTGAGATTAAAGACTTCTATGTGACTTCCCTGACTATACTTTTTTAGATACATTGTATTTGTTTCAGCTGACTTTATTTGTTACTTCTTATGTAAAGAGTTTAAACTTATTTGAAATATAGATAAAT]
[-] EMBL CD073893 [TCACATTTCACTAATCAGTTTACCTCCTATTGATGAGAATAAATGGGGTGCTATTGAAATAGCTAAAGGAAGGGCAATTACACGTAAACTAGATACTTGTGCGACCTATGCAGTTGCATGTCAAGAGGTTGCCAACGTCAATAAAGTTGGTTTTGTGAATTTATATGAAGCTATGTTAATGCAAAAGAATTGGGAATCTTTTCTTTCAGACGGTTTACACTTTTTTAGAAAAGGATTTGAGTTTTTGGCGAGGATTTTAGAAGAATTACTTATGGATAAATTAGGTGACTTAAAGTGGTGGTTTCCGGATTGGAAAGTTATAAACCCGAACGACCCAGTGGAGTTTATCAATCACTATCTTCAGTCCCAAATCTGATGTTTTTTGAGATTAAAGACTTCTATGTGACTTCCCTGACTATACTTTTTTAGATACATTGTATTTGTTTCAGCTGACTTTATTTGTTACTTCTTATGTAAAGAGTTTAAACTTATTTGAAATATAGATAAAT]
consensusID : consensus_7652#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence
[GAGCTCATGACTTTTCCAAAGGCTGTTTTCTTCGGAGATTCTCTAACGCAGTTTGGTTGGACCCATGAAGGCGGCTGGCTATCGATCCTGGCATCAACTTTTGTCAGGTACGTTGTGTATATTTAATCACTGACTTTTGTCCTTACAGTCCTAATATGCAATTATATTCAGCAACTATAAGGAAATCGACTGTGGGTTATCTCGAGCGGCAGTCGTTTAAATATCGCTTGTGGTCATCACAATTTTTTGTCGATTTGCAAGCTAACCTCGGTAATTTCGTAGGGACCGTCAAATAGTACACGTTCGTTTGCAATATCGTGTCTGCAATTTTTTAGTAGAGTTTAGGTTGATTTCTCATCAACTGAATTGTCATATTGAATAGTAGATTAGTTGAAAATCCTACGANCACAAATTCTTTTGAATT]
[+] EMBL CD186285 [GAGCTCATGACTTTTCCAAAGGCTGTTTTCTTCGGAGATTCTCTAACGCAGTTTGGTTGGACCCATGAAGGCGGCTGGCTATCGATCCTGGCATCAACTTTTGTCAGGTACGTTGTGTATATTTAATCACTGACTTTTGTCCTTACAGTCCTAATATGCAATTATATTCAGCAACTATAAGGAAATCGACTGTGGGTTATCTCGAGCGGCAGTCGTTTAAATATCGCTTGTGGTCATCACAATTTTTTGTCGATTTGCAAGCTAACCTCGGTAATTTCGTAGGGACCGTCAAATAGTACACGTTCGTTTGCAATATCGTGTCTGCAATTTTTTAGTAGAGTTTAGGTTGATTTCTCATCAACTGAATTGTCATATTGAATAGTAGATTAGTTGAAAATCCTACGANCACAAATTCTTTTGAATT]
consensusID : consensus_7652#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 247 fasta sequence
[TATTGGACATTGAGGTGACCTTATCACAGCCTTGAGCTCATGACTTTTCCAAAGGCTGTTTTCTTCGGAGATTCTCTAACGCAGTTTGGTTGGACCCATGAAGGCGGCTGGCTATCGATCCTGGCATCAACTTTTGTCAGGAAGATAGATATTGTTGGAAGAGGTTATTCTGGTTATAACACTCGTTTGTGCAAACCGTTACTTCCAATCCTCTATCCGAATAAGGACTCACTAAAGGATTGTAAAT]
[+] EMBL CD131934 [TATTGGACATTGAGGTGACCTTATCACAGCCTTGAGCTCATGACTTTTCCAAAGGCTGTTTTCTTCGGAGATTCTCTAACGCAGTTTGGTTGGACCCATGAAGGCGGCTGGCTATCGATCCTGGCATCAACTTTTGTCAGGAAGATAGATATTGTTGGAAGAGGTTATTCTGGTTATAACACTCGTTTGTGCAAACCGTTACTTCCAATCCTCTATCCGAATAAGGACTCACTAAAGGATTGTAAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7652#3 ------------------------------------------------------------
consensus_7652#4 ------------------------------------------------------------
consensus_7652#0 ------------------------------------------------------------
consensus_7652#1 CTCGAGGGCCANAATTCGGCACGAGGAGTAAATGTTCTCAATTTCAAACGTCTCTAAAAC 60
consensus_7652#2 --------TCACATTTCACTAATCAGTTTACCTCCTATTGATGAGAATAAATGGGGTGCT 52
consensus_7652#3 ------------------------------------------------------GAGCTC 6
consensus_7652#4 ---------------------TATTGGACATTGAGGTGACCTTATCACAGCCTTGAGCTC 39
consensus_7652#0 ------------------------------------CCANAATTTGGCACGAGGGACCTC 24
consensus_7652#1 AGTAAATCATTATTAGTTGTCACTAACTTTTGTCCTCTAATCTGTCACTCAATTGATCTT 120
consensus_7652#2 ATTGAAATAGCTAAAGGAAGGGCAATTACACGTAAACTAGATACTTGTGCGACCTATGCA 112
*
consensus_7652#3 ATGACTTTTCCAAAGGCTGT---TTTCTTCGGAG---ATTCTCTAACGCAGTTTGGTTGG 60
consensus_7652#4 ATGACTTTTCCAAAGGCTGT---TTTCTTCGGAG---ATTCTCTAACGCAGTTTGGTTGG 93
consensus_7652#0 ATGACTTTTCCAA-GGCTGT---TTTCTTCGGAG---ATTCTCTAACGCAGTTTGGTTGG 77
consensus_7652#1 TTTCCATTAATAGAAATTGGACGTGCCTATGGATCACATTTCACTAATCAGTTTACCTCC 180
consensus_7652#2 GTTGCATGTCAAGAGGTTGCCAACGTCAATAAAGTTGGTTTTGTGAATTTATATGAAGCT 172
* * * * ** * * ** * * *
consensus_7652#3 --ACCCATGAAGGCGGCTGGCTATCGATCCTGGCATCAACTTTTGTCAGGTACGTTGTGT 118
consensus_7652#4 --ACCCATGAAGGCGGCTGGCTATCGATCCTGGCATCAACTTTTGTCAGGAAGATAGATA 151
consensus_7652#0 --ACCCATGAAGGCGGCTGGCTATCGATCCTGGCATCAACTTTTGTCAGGAAGATAGATA 135
consensus_7652#1 -TATTGATGAGAATAAATGGGGTGCTATTNNNNNNNNNNNAGGTGACTCGGAAATTTAGT 239
consensus_7652#2 ATGTTAATGCAAAAGAATTGGGAATC-TTTTCTTTCAGACGGTTTACAC----------- 220
*** * * * * *
consensus_7652#3 ATATTTAATCACTGACTTTTGTCCTTACAGTCCTAATATGCAATTATATTC-----AGCA 173
consensus_7652#4 TTGTTGGA--AGAGGTTATTCTGGTTATAACACTCGTTTGTGCAAACCGTT-----ACTT 204
consensus_7652#0 TTGTTGGA--AGAGGTTATTCTGGTTATAACACTCGTTTGTGCAAACCGTT-----ACTT 188
consensus_7652#1 TTTTTTTATTATATATATGTATAAAGAGCATAGGTTAAATTAAAAATGCTTCGTAAAACG 299
consensus_7652#2 TTTTTTAGAAAAGGATTTGAGTTTTTGGCGAGGATTTTAGAAGAATTACTT-ATGGATAA 279
* ** * * * *
consensus_7652#3 ACTATAAGGAAATCGACTGTGGGTTATCTCGAGCGGCAGTCGTTTAAATATCGCTTGTGG 233
consensus_7652#4 CCAATCCTCTATCCGAATAAGGACTCACTAAAG-GATTGTAAAT---------------- 247
consensus_7652#0 CCAATCCTCTATCCGAATAAGGACTCACTAAAG-GATTGTAAATTCTTCACTATTTTTCT 247
consensus_7652#1 GTCATCAGAGCAGAGATAACGGATTGTATACACGAAAAGTCA--TAAAGAACACTTATCT 357
consensus_7652#2 ATTAGGTGACTTAAAGTGGTGGTTTCCGGAT-TGGAAAGTTA--TAAA----------CC 326
* ** * **
consensus_7652#3 TCATCACAAT--TTTTTGTCGATTTGCAAGCTAACCTCGGTAATTTCGTAGGGAC----- 286
consensus_7652#4 ------------------------------------------------------------
consensus_7652#0 CGGAGCTAATGATGCTTGTGTAACTCCACAACAGCATGTACCAGTTGAAGAATACAAAAG 307
consensus_7652#1 TAAACTTCNNNNNNNNTACCCATTTATTTAGTACCTCTTTCTA-CTGAATTTTAATCAAA 416
consensus_7652#2 CGAACGACCCAGTGGA-----GTTTATCAATCACTATCTTCAGTCCCAAATCTGATGTTT 381
consensus_7652#3 CGTCAAATAGTACACGTTCGTTTGCAAT-ATCGTGTCTGCAATTTTTTAGTAGAGTTTAG 345
consensus_7652#4 ------------------------------------------------------------
consensus_7652#0 TAATCTAAGCTGGATGATTGATTATATTCATAAATTGGACGTGCCTATGGATCACATTTC 367
consensus_7652#1 TTTACGTTAAAAGTCATTTG--TATAAGGAATTTGTACTTGTTTTTTTAGGA------AG 468
consensus_7652#2 TTTGAGATTAAAGACTTCTA--TGTGACTTCCCTGACTATACTTTTTTAGAT------AC 433
consensus_7652#3 GTTGATTTCTCATCAACTGAATTGTCATATTGAATAGTAGATTAGTTGAAAATCCTACG- 404
consensus_7652#4 ------------------------------------------------------------
consensus_7652#0 ACTAATCAGTTTACCTCCTATTGATGAGAATAAATGGGGTGCTATTGAAATAGCTAAAGG 427
consensus_7652#1 GGCAATTACACGTAAACTAGATACTTGTGCGACCTATGCAGTAAGTTGGTTTTGTGAATT 528
consensus_7652#2 ATTGTATTTGTTTCAGCTGACTTTATTTGTTACTTCTTATGTAAAGAGTT----TAAACT 489
consensus_7652#3 -ANCACAAATTCTTTTGAATT--------------------------------------- 424
consensus_7652#4 ------------------------------------------------------------
consensus_7652#0 AAGGGCAATTACACGTAAACTAGATACTTGTGCGACCTATGCAGTTGCATGTCAAGAGGT 487
consensus_7652#1 TATATGAAGC-TATGTTAATGCAAAAGAATTGGGAATCTTTTCTTTCAGACGGTTTACAC 587
consensus_7652#2 TATTTGAAATATAGATAAAT---------------------------------------- 509
consensus_7652#3 ------------------------------------------------------------
consensus_7652#4 ------------------------------------------------------------
consensus_7652#0 TGCCAACGTCAATAAAGTTGGTTTTGTGAATTTATATGAAGCTATGTTAATGCANAAGAA 547
consensus_7652#1 TTTTCTAGAAAAGGATCTGAGTTTTTGGCGAGGATTNTA--------------------- 626
consensus_7652#2 ------------------------------------------------------------
consensus_7652#3 ------------------------------------------------------------
consensus_7652#4 ------------------------------------------------------------
consensus_7652#0 TTGGGAATCTTTTCTTTCAGACGGTTTACACTTTTCTAGAANAGGATCTGAGTTNTTGGC 607
consensus_7652#1 ------------------------------------------------------------
consensus_7652#2 ------------------------------------------------------------
consensus_7652#3 ------------------------------------------------------------
consensus_7652#4 ------------------------------------------------------------
consensus_7652#0 GAGGATNNTAGAAGAATTACTTATGGGGATAATANGTGACTTTAAGTGGGTGGTTTCGGA 667
consensus_7652#1 ------------------------------------------------------------
consensus_7652#2 ------------------------------------------------------------
consensus_7652#3 ------------------------------------------------------------
consensus_7652#4 ------------------------------------------------------------
consensus_7652#0 TTGGAAAGTATAANNCCGACGACCNNAGTGGAGTTATCATCACTATCTTCATCCCAATCT 727
consensus_7652#1 ------------------------------------------------------------
consensus_7652#2 ------------------------------------------------------------
consensus_7652#3 ------------------------------------------------------------
consensus_7652#4 ------------------------------------------------------------
consensus_7652#0 GATNGTTCTGAAATAANGACTNCATGNGACTTACTGACTTACTTNCTAGAANCATGATTN 787
consensus_7652#1 ------------------------------------------------------------
consensus_7652#2 ------------------------------------------------------------
consensus_7652#3 ---------------------------------------
consensus_7652#4 ---------------------------------------
consensus_7652#0 GNTCAGCGACTATTGTCTCTTGAANGNTAACTATGAATN 826
consensus_7652#1 ---------------------------------------
consensus_7652#2 ---------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||