These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7652#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 826 fasta sequence [CCANAATTTGGCACGAGGGACCTCATGACTTTTCCAAGGCTGTTTTCTTCGGAGATTCTCTAACGCAGTTTGGTTGGACCCATGAAGGCGGCTGGCTATCGATCCTGGCATCAACTTTTGTCAGGAAGATAGATATTGTTGGAAGAGGTTATTCTGGTTATAACACTCGTTTGTGCAAACCGTTACTTCCAATCCTCTATCCGAATAAGGACTCACTAAAGGATTGTAAATTCTTCACTATTTTTCTCGGAGCTAATGATGCTTGTGTAACTCCACAACAGCATGTACCAGTTGAAGAATACAAAAGTAATCTAAGCTGGATGATTGATTATATTCATAAATTGGACGTGCCTATGGATCACATTTCACTAATCAGTTTACCTCCTATTGATGAGAATAAATGGGGTGCTATTGAAATAGCTAAAGGAAGGGCAATTACACGTAAACTAGATACTTGTGCGACCTATGCAGTTGCATGTCAAGAGGTTGCCAACGTCAATAAAGTTGGTTTTGTGAATTTATATGAAGCTATGTTAATGCANAAGAATTGGGAATCTTTTCTTTCAGACGGTTTACACTTTTCTAGAANAGGATCTGAGTTNTTGGCGAGGATNNTAGAAGAATTACTTATGGGGATAATANGTGACTTTAAGTGGGTGGTTTCGGATTGGAAAGTATAANNCCGACGACCNNAGTGGAGTTATCATCACTATCTTCATCCCAATCTGATNGTTCTGAAATAANGACTNCATGNGACTTACTGACTTACTTNCTAGAANCATGATTNGNTCAGCGACTATTGTCTCTTGAANGNTAACTATGAATN] [+] EMBL CD079629 [CCANAATTTGGCACGAGGGACCTCATGACTTTTCCAAGGCTGTTTTCTTCGGAGATTCTCTAACGCAGTTTGGTTGGACCCATGAAGGCGGCTGGCTATCGATCCTGGCATCAACTTTTGTCAGGAAGATAGATATTGTTGGAAGAGGTTATTCTGGTTATAACACTCGTTTGTGCAAACCGTTACTTCCAATCCTCTATCCGAATAAGGACTCACTAAAGGATTGTAAATTCTTCACTATTTTTCTCGGAGCTAATGATGCTTGTGTAACTCCACAACAGCATGTACCAGTTGAAGAATACAAAAGTAATCTAAGCTGGATGATTGATTATATTCATAAATTGGACGTGCCTATGGATCACATTTCACTAATCAGTTTACCTCCTATTGATGAGAATAAATGGGGTGCTATTGAAATAGCTAAAGGAAGGGCAATTACACGTAAACTAGATACTTGTGCGACCTATGCAGTTGCATGTCAAGAGGTTGCCAACGTCAATAAAGTTGGTTTTGTGAATTTATATGAAGCTATGTTAATGCANAAGAATTGGGAATCTTTTCTTTCAGACGGTTTACACTTTTCTAGAANAGGATCTGAGTTNTTGGCGAGGATNNTAGAAGAATTACTTATGGGGATAATANGTGACTTTAAGTGGGTGGTTTCGGATTGGAAAGTATAANNCCGACGACCNNAGTGGAGTTATCATCACTATCTTCATCCCAATCTGATNGTTCTGAAATAANGACTNCATGNGACTTACTGACTTACTTNCTAGAANCATGATTNGNTCAGCGACTATTGTCTCTTGAANGNTAACTATGAATN] consensusID : consensus_7652#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence [CTCGAGGGCCANAATTCGGCACGAGGAGTAAATGTTCTCAATTTCAAACGTCTCTAAAACAGTAAATCATTATTAGTTGTCACTAACTTTTGTCCTCTAATCTGTCACTCAATTGATCTTTTTCCATTAATAGAAATTGGACGTGCCTATGGATCACATTTCACTAATCAGTTTACCTCCTATTGATGAGAATAAATGGGGTGCTATTNNNNNNNNNNNAGGTGACTCGGAAATTTAGTTTTTTTTATTATATATATGTATAAAGAGCATAGGTTAAATTAAAAATGCTTCGTAAAACGGTCATCAGAGCAGAGATAACGGATTGTATACACGAAAAGTCATAAAGAACACTTATCTTAAACTTCNNNNNNNNTACCCATTTATTTAGTACCTCTTTCTACTGAATTTTAATCAAATTTACGTTAAAAGTCATTTGTATAAGGAATTTGTACTTGTTTTTTTAGGAAGGGCAATTACACGTAAACTAGATACTTGTGCGACCTATGCAGTAAGTTGGTTTTGTGAATTTATATGAAGCTATGTTAATGCAAAAGAATTGGGAATCTTTTCTTTCAGACGGTTTACACTTTTCTAGAAAAGGATCTGAGTTTTTGGCGAGGATTNTA] [+] EMBL CD080949 [CTCGAGGGCCANAATTCGGCACGAGGAGTAAATGTTCTCAATTTCAAACGTCTCTAAAACAGTAAATCATTATTAGTTGTCACTAACTTTTGTCCTCTAATCTGTCACTCAATTGATCTTTTTCCATTAATAGAAATTGGACGTGCCTATGGATCACATTTCACTAATCAGTTTACCTCCTATTGATGAGAATAAATGGGGTGCTATTNNNNNNNNNNNAGGTGACTCGGAAATTTAGTTTTTTTTATTATATATATGTATAAAGAGCATAGGTTAAATTAAAAATGCTTCGTAAAACGGTCATCAGAGCAGAGATAACGGATTGTATACACGAAAAGTCATAAAGAACACTTATCTTAAACTTCNNNNNNNNTACCCATTTATTTAGTACCTCTTTCTACTGAATTTTAATCAAATTTACGTTAAAAGTCATTTGTATAAGGAATTTGTACTTGTTTTTTTAGGAAGGGCAATTACACGTAAACTAGATACTTGTGCGACCTATGCAGTAAGTTGGTTTTGTGAATTTATATGAAGCTATGTTAATGCAAAAGAATTGGGAATCTTTTCTTTCAGACGGTTTACACTTTTCTAGAAAAGGATCTGAGTTTTTGGCGAGGATTNTA] consensusID : consensus_7652#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 509 fasta sequence [TCACATTTCACTAATCAGTTTACCTCCTATTGATGAGAATAAATGGGGTGCTATTGAAATAGCTAAAGGAAGGGCAATTACACGTAAACTAGATACTTGTGCGACCTATGCAGTTGCATGTCAAGAGGTTGCCAACGTCAATAAAGTTGGTTTTGTGAATTTATATGAAGCTATGTTAATGCAAAAGAATTGGGAATCTTTTCTTTCAGACGGTTTACACTTTTTTAGAAAAGGATTTGAGTTTTTGGCGAGGATTTTAGAAGAATTACTTATGGATAAATTAGGTGACTTAAAGTGGTGGTTTCCGGATTGGAAAGTTATAAACCCGAACGACCCAGTGGAGTTTATCAATCACTATCTTCAGTCCCAAATCTGATGTTTTTTGAGATTAAAGACTTCTATGTGACTTCCCTGACTATACTTTTTTAGATACATTGTATTTGTTTCAGCTGACTTTATTTGTTACTTCTTATGTAAAGAGTTTAAACTTATTTGAAATATAGATAAAT] [-] EMBL CD073893 [TCACATTTCACTAATCAGTTTACCTCCTATTGATGAGAATAAATGGGGTGCTATTGAAATAGCTAAAGGAAGGGCAATTACACGTAAACTAGATACTTGTGCGACCTATGCAGTTGCATGTCAAGAGGTTGCCAACGTCAATAAAGTTGGTTTTGTGAATTTATATGAAGCTATGTTAATGCAAAAGAATTGGGAATCTTTTCTTTCAGACGGTTTACACTTTTTTAGAAAAGGATTTGAGTTTTTGGCGAGGATTTTAGAAGAATTACTTATGGATAAATTAGGTGACTTAAAGTGGTGGTTTCCGGATTGGAAAGTTATAAACCCGAACGACCCAGTGGAGTTTATCAATCACTATCTTCAGTCCCAAATCTGATGTTTTTTGAGATTAAAGACTTCTATGTGACTTCCCTGACTATACTTTTTTAGATACATTGTATTTGTTTCAGCTGACTTTATTTGTTACTTCTTATGTAAAGAGTTTAAACTTATTTGAAATATAGATAAAT] consensusID : consensus_7652#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence [GAGCTCATGACTTTTCCAAAGGCTGTTTTCTTCGGAGATTCTCTAACGCAGTTTGGTTGGACCCATGAAGGCGGCTGGCTATCGATCCTGGCATCAACTTTTGTCAGGTACGTTGTGTATATTTAATCACTGACTTTTGTCCTTACAGTCCTAATATGCAATTATATTCAGCAACTATAAGGAAATCGACTGTGGGTTATCTCGAGCGGCAGTCGTTTAAATATCGCTTGTGGTCATCACAATTTTTTGTCGATTTGCAAGCTAACCTCGGTAATTTCGTAGGGACCGTCAAATAGTACACGTTCGTTTGCAATATCGTGTCTGCAATTTTTTAGTAGAGTTTAGGTTGATTTCTCATCAACTGAATTGTCATATTGAATAGTAGATTAGTTGAAAATCCTACGANCACAAATTCTTTTGAATT] [+] EMBL CD186285 [GAGCTCATGACTTTTCCAAAGGCTGTTTTCTTCGGAGATTCTCTAACGCAGTTTGGTTGGACCCATGAAGGCGGCTGGCTATCGATCCTGGCATCAACTTTTGTCAGGTACGTTGTGTATATTTAATCACTGACTTTTGTCCTTACAGTCCTAATATGCAATTATATTCAGCAACTATAAGGAAATCGACTGTGGGTTATCTCGAGCGGCAGTCGTTTAAATATCGCTTGTGGTCATCACAATTTTTTGTCGATTTGCAAGCTAACCTCGGTAATTTCGTAGGGACCGTCAAATAGTACACGTTCGTTTGCAATATCGTGTCTGCAATTTTTTAGTAGAGTTTAGGTTGATTTCTCATCAACTGAATTGTCATATTGAATAGTAGATTAGTTGAAAATCCTACGANCACAAATTCTTTTGAATT] consensusID : consensus_7652#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 247 fasta sequence [TATTGGACATTGAGGTGACCTTATCACAGCCTTGAGCTCATGACTTTTCCAAAGGCTGTTTTCTTCGGAGATTCTCTAACGCAGTTTGGTTGGACCCATGAAGGCGGCTGGCTATCGATCCTGGCATCAACTTTTGTCAGGAAGATAGATATTGTTGGAAGAGGTTATTCTGGTTATAACACTCGTTTGTGCAAACCGTTACTTCCAATCCTCTATCCGAATAAGGACTCACTAAAGGATTGTAAAT] [+] EMBL CD131934 [TATTGGACATTGAGGTGACCTTATCACAGCCTTGAGCTCATGACTTTTCCAAAGGCTGTTTTCTTCGGAGATTCTCTAACGCAGTTTGGTTGGACCCATGAAGGCGGCTGGCTATCGATCCTGGCATCAACTTTTGTCAGGAAGATAGATATTGTTGGAAGAGGTTATTCTGGTTATAACACTCGTTTGTGCAAACCGTTACTTCCAATCCTCTATCCGAATAAGGACTCACTAAAGGATTGTAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7652#3 ------------------------------------------------------------ consensus_7652#4 ------------------------------------------------------------ consensus_7652#0 ------------------------------------------------------------ consensus_7652#1 CTCGAGGGCCANAATTCGGCACGAGGAGTAAATGTTCTCAATTTCAAACGTCTCTAAAAC 60 consensus_7652#2 --------TCACATTTCACTAATCAGTTTACCTCCTATTGATGAGAATAAATGGGGTGCT 52 consensus_7652#3 ------------------------------------------------------GAGCTC 6 consensus_7652#4 ---------------------TATTGGACATTGAGGTGACCTTATCACAGCCTTGAGCTC 39 consensus_7652#0 ------------------------------------CCANAATTTGGCACGAGGGACCTC 24 consensus_7652#1 AGTAAATCATTATTAGTTGTCACTAACTTTTGTCCTCTAATCTGTCACTCAATTGATCTT 120 consensus_7652#2 ATTGAAATAGCTAAAGGAAGGGCAATTACACGTAAACTAGATACTTGTGCGACCTATGCA 112 * consensus_7652#3 ATGACTTTTCCAAAGGCTGT---TTTCTTCGGAG---ATTCTCTAACGCAGTTTGGTTGG 60 consensus_7652#4 ATGACTTTTCCAAAGGCTGT---TTTCTTCGGAG---ATTCTCTAACGCAGTTTGGTTGG 93 consensus_7652#0 ATGACTTTTCCAA-GGCTGT---TTTCTTCGGAG---ATTCTCTAACGCAGTTTGGTTGG 77 consensus_7652#1 TTTCCATTAATAGAAATTGGACGTGCCTATGGATCACATTTCACTAATCAGTTTACCTCC 180 consensus_7652#2 GTTGCATGTCAAGAGGTTGCCAACGTCAATAAAGTTGGTTTTGTGAATTTATATGAAGCT 172 * * * * ** * * ** * * * consensus_7652#3 --ACCCATGAAGGCGGCTGGCTATCGATCCTGGCATCAACTTTTGTCAGGTACGTTGTGT 118 consensus_7652#4 --ACCCATGAAGGCGGCTGGCTATCGATCCTGGCATCAACTTTTGTCAGGAAGATAGATA 151 consensus_7652#0 --ACCCATGAAGGCGGCTGGCTATCGATCCTGGCATCAACTTTTGTCAGGAAGATAGATA 135 consensus_7652#1 -TATTGATGAGAATAAATGGGGTGCTATTNNNNNNNNNNNAGGTGACTCGGAAATTTAGT 239 consensus_7652#2 ATGTTAATGCAAAAGAATTGGGAATC-TTTTCTTTCAGACGGTTTACAC----------- 220 *** * * * * * consensus_7652#3 ATATTTAATCACTGACTTTTGTCCTTACAGTCCTAATATGCAATTATATTC-----AGCA 173 consensus_7652#4 TTGTTGGA--AGAGGTTATTCTGGTTATAACACTCGTTTGTGCAAACCGTT-----ACTT 204 consensus_7652#0 TTGTTGGA--AGAGGTTATTCTGGTTATAACACTCGTTTGTGCAAACCGTT-----ACTT 188 consensus_7652#1 TTTTTTTATTATATATATGTATAAAGAGCATAGGTTAAATTAAAAATGCTTCGTAAAACG 299 consensus_7652#2 TTTTTTAGAAAAGGATTTGAGTTTTTGGCGAGGATTTTAGAAGAATTACTT-ATGGATAA 279 * ** * * * * consensus_7652#3 ACTATAAGGAAATCGACTGTGGGTTATCTCGAGCGGCAGTCGTTTAAATATCGCTTGTGG 233 consensus_7652#4 CCAATCCTCTATCCGAATAAGGACTCACTAAAG-GATTGTAAAT---------------- 247 consensus_7652#0 CCAATCCTCTATCCGAATAAGGACTCACTAAAG-GATTGTAAATTCTTCACTATTTTTCT 247 consensus_7652#1 GTCATCAGAGCAGAGATAACGGATTGTATACACGAAAAGTCA--TAAAGAACACTTATCT 357 consensus_7652#2 ATTAGGTGACTTAAAGTGGTGGTTTCCGGAT-TGGAAAGTTA--TAAA----------CC 326 * ** * ** consensus_7652#3 TCATCACAAT--TTTTTGTCGATTTGCAAGCTAACCTCGGTAATTTCGTAGGGAC----- 286 consensus_7652#4 ------------------------------------------------------------ consensus_7652#0 CGGAGCTAATGATGCTTGTGTAACTCCACAACAGCATGTACCAGTTGAAGAATACAAAAG 307 consensus_7652#1 TAAACTTCNNNNNNNNTACCCATTTATTTAGTACCTCTTTCTA-CTGAATTTTAATCAAA 416 consensus_7652#2 CGAACGACCCAGTGGA-----GTTTATCAATCACTATCTTCAGTCCCAAATCTGATGTTT 381 consensus_7652#3 CGTCAAATAGTACACGTTCGTTTGCAAT-ATCGTGTCTGCAATTTTTTAGTAGAGTTTAG 345 consensus_7652#4 ------------------------------------------------------------ consensus_7652#0 TAATCTAAGCTGGATGATTGATTATATTCATAAATTGGACGTGCCTATGGATCACATTTC 367 consensus_7652#1 TTTACGTTAAAAGTCATTTG--TATAAGGAATTTGTACTTGTTTTTTTAGGA------AG 468 consensus_7652#2 TTTGAGATTAAAGACTTCTA--TGTGACTTCCCTGACTATACTTTTTTAGAT------AC 433 consensus_7652#3 GTTGATTTCTCATCAACTGAATTGTCATATTGAATAGTAGATTAGTTGAAAATCCTACG- 404 consensus_7652#4 ------------------------------------------------------------ consensus_7652#0 ACTAATCAGTTTACCTCCTATTGATGAGAATAAATGGGGTGCTATTGAAATAGCTAAAGG 427 consensus_7652#1 GGCAATTACACGTAAACTAGATACTTGTGCGACCTATGCAGTAAGTTGGTTTTGTGAATT 528 consensus_7652#2 ATTGTATTTGTTTCAGCTGACTTTATTTGTTACTTCTTATGTAAAGAGTT----TAAACT 489 consensus_7652#3 -ANCACAAATTCTTTTGAATT--------------------------------------- 424 consensus_7652#4 ------------------------------------------------------------ consensus_7652#0 AAGGGCAATTACACGTAAACTAGATACTTGTGCGACCTATGCAGTTGCATGTCAAGAGGT 487 consensus_7652#1 TATATGAAGC-TATGTTAATGCAAAAGAATTGGGAATCTTTTCTTTCAGACGGTTTACAC 587 consensus_7652#2 TATTTGAAATATAGATAAAT---------------------------------------- 509 consensus_7652#3 ------------------------------------------------------------ consensus_7652#4 ------------------------------------------------------------ consensus_7652#0 TGCCAACGTCAATAAAGTTGGTTTTGTGAATTTATATGAAGCTATGTTAATGCANAAGAA 547 consensus_7652#1 TTTTCTAGAAAAGGATCTGAGTTTTTGGCGAGGATTNTA--------------------- 626 consensus_7652#2 ------------------------------------------------------------ consensus_7652#3 ------------------------------------------------------------ consensus_7652#4 ------------------------------------------------------------ consensus_7652#0 TTGGGAATCTTTTCTTTCAGACGGTTTACACTTTTCTAGAANAGGATCTGAGTTNTTGGC 607 consensus_7652#1 ------------------------------------------------------------ consensus_7652#2 ------------------------------------------------------------ consensus_7652#3 ------------------------------------------------------------ consensus_7652#4 ------------------------------------------------------------ consensus_7652#0 GAGGATNNTAGAAGAATTACTTATGGGGATAATANGTGACTTTAAGTGGGTGGTTTCGGA 667 consensus_7652#1 ------------------------------------------------------------ consensus_7652#2 ------------------------------------------------------------ consensus_7652#3 ------------------------------------------------------------ consensus_7652#4 ------------------------------------------------------------ consensus_7652#0 TTGGAAAGTATAANNCCGACGACCNNAGTGGAGTTATCATCACTATCTTCATCCCAATCT 727 consensus_7652#1 ------------------------------------------------------------ consensus_7652#2 ------------------------------------------------------------ consensus_7652#3 ------------------------------------------------------------ consensus_7652#4 ------------------------------------------------------------ consensus_7652#0 GATNGTTCTGAAATAANGACTNCATGNGACTTACTGACTTACTTNCTAGAANCATGATTN 787 consensus_7652#1 ------------------------------------------------------------ consensus_7652#2 ------------------------------------------------------------ consensus_7652#3 --------------------------------------- consensus_7652#4 --------------------------------------- consensus_7652#0 GNTCAGCGACTATTGTCTCTTGAANGNTAACTATGAATN 826 consensus_7652#1 --------------------------------------- consensus_7652#2 --------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||