cluster # 7655

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Schistosoma mansoni
cluster # 7655 cluster # 7655 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7655#0 length = 465 sequences # 2

consensus_7655#1 length = 233 sequences # 2
consensus_7655#2 length = 213 sequences # 1

consensusID : consensus_7655#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 465
fasta sequence

                              [CACCTGGATGGCTGTGCTGTTGCCGATGAAAGTGGCAGACATCTTGAGACCACGTGGTGGAATGTCGCAGACAGCTGTCTTAACATTGTTGGGGATCCATTCGACAAAGTAGGAGGAGTTCTTGTTCTGGACATTGAGCATCAGTTCGTCAACTTCCTTCATGGACATGCGGCCTCTGAAGATGGCTGCAACTGTGAGGTAGCGGCCGTGGCGTGGGTCGCAGGCGGCCATCATGTTCTTGGCATCAAACATCTGCTGTGTCAACTCTGGGACAGTAAGGGCGCGGTACTGCTGTGAGTCCCTGGATGTAAGGNGAGCGAACCCTGGCATGGAGAAGTGGAGA-CGGGNGAANGGCACCATGNTTGACTGCAGTTTTTCTCAGTCAGCGNTCAACTGGNNCAGG-AANCCTGAGCATGTGGTCACAC-CGACATGGNTGCGCTGACTAGATGNNNTCAGTCACCATAG]

[+] EMBL CD138263             [CACCTGGATGGCTGTGCTGTTGCCGATGAAAGTGGCAGACATCTTGAGACCACGTGGTGGAATGTCGCAGACAGCTGTCTTAACATTGTTGGGGATCCATTCGACAAAGTAGGAGGAGTTCTTGTTCTGGACATTGAGCATCAGTTCGTCAACTTCCTTCATGGACATGCGGCCTCTGAAGATGGCTGCAACTGTGAGGTAGCGGCCGTGGCGTGGGTCGCAGGCGGCCATCATGTTCTTGGCATCAAACATCTGCTGTGTCAACTCTGGGACAGTAAGGGCGCGGTACTGCTGTGAGTCCCTGGATGTAAGGNGAGCGAACCCTGGCATGGAGAAGTGGAGA CGGGNGAANGGCACCATGNTTGACTGCAGTTTTTCTCAGTCAGCGNTCAACTGGNNCAGG AANCCTGAGCATGTGGTCACAC CGACATGGNTGCGCTGACTAGATGNNNTCAGTCACCATAG]
[+] EMBL CD138350             [CACCTGGATGGCTGTGCTGTTGCCGATGAAAGTGGCAGACATCTTGAGACCACGTGGTGGAATGTCGCAGACAGCTGTCTTAACATTGTTGGGGATCCATTCGACAAAGTAGGAGGAGTTCTTGTTCTGGACATTGAGCATCTGTTCGTCAACTTCCTTCATGGACATGCGGCCTCTGAAGATGGCTGCAACTGTGAGGTAGCGGCCGTGGCGTGGGTCGCAGGCGGCCATCATGCTCTTGGCATCAAACATCTGCTGTGTCAACTCTGGGACAGTAAGGGCGCGGTACTGCTGTGAGCCCCTGGATGTAAGGNGAGCGAACCCTGGCATGAAGAAGTGGAGATCGGG GAAGGGCACCATGNTTGACTGCAGTTTTTCTCAGTCAGCGNTCAACTGG CCAGGNAANCCTGAGCATGTGGTCACACGGGACATG  TGCGCTGACTAGATG GNTCAGTCACat   ]




>consensus_7655#0
CACCTGGATGGCTGTGCTGTTGCCGATGAAAGTGGCAGACATCTTGAGACCACGTGGTGG
AATGTCGCAGACAGCTGTCTTAACATTGTTGGGGATCCATTCGACAAAGTAGGAGGAGTT
CTTGTTCTGGACATTGAGCATCAGTTCGTCAACTTCCTTCATGGACATGCGGCCTCTGAA
GATGGCTGCAACTGTGAGGTAGCGGCCGTGGCGTGGGTCGCAGGCGGCCATCATGTTCTT
GGCATCAAACATCTGCTGTGTCAACTCTGGGACAGTAAGGGCGCGGTACTGCTGTGAGTC
CCTGGATGTAAGGNGAGCGAACCCTGGCATGGAGAAGTGGAGACGGGNGAANGGCACCAT
GNTTGACTGCAGTTTTTCTCAGTCAGCGNTCAACTGGNNCAGGAANCCTGAGCATGTGGT
CACACCGACATGGNTGCGCTGACTAGATGNNNTCAGTCACCATAG

consensusID : consensus_7655#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 233
fasta sequence

                              [CCAGTGCCGCCACCAAGTGAATGTGTGAGTTGGAAACCCTGTAAGCAGTCGCAGTTTTCAGCCTCTTTCCTAACTACATCCATAACTGAATATACGAGCTCAGCTCCCTCTGCGTAGTGACATATAGCCCAGTTGTTGCCAGCACCTGACTGTCCAAATACAAAGTTATCTGGTCTGAAAATATGACCAAAAGGCCCAGATCTGACACTGTCCATTGTACCGGGTTCCAAATC]

[-] EMBL CD130805             [CCAGTGCCGCCACCAAGTGAATGTGTGAGTTGGAAACCCTGTAAGCAGTCGCAGTTTTCAGCCTCTTTCCTAACTACATCCATAACTGAATATACGAGCTCAGCTCCCTCTGCGTAGTGACATATAGCCCAGTTGTTGCCAGCACCTGACTGTCCAAATACAAAGTTATCTGGTCTGAAAATATGACCAAAAGGCCCAGATCTGACACTGTCCATTGTACCGGGTTCCAAATC]
[+] EMBL CD144580             [                          GAGTTGGAAACCCTGTAAGCAGTCGCAGTTTTCAGCCTCTTTCCTAACTACATCCATAACTGAATCTACGAGCTCAGCTCCCTCTGTGTAGTGACCTTTAACCCAGT                                                                                                    ]




>consensus_7655#1
CCAGTGCCGCCACCAAGTGAATGTGTGAGTTGGAAACCCTGTAAGCAGTCGCAGTTTTCA
GCCTCTTTCCTAACTACATCCATAACTGAATATACGAGCTCAGCTCCCTCTGCGTAGTGA
CATATAGCCCAGTTGTTGCCAGCACCTGACTGTCCAAATACAAAGTTATCTGGTCTGAAA
ATATGACCAAAAGGCCCAGATCTGACACTGTCCATTGTACCGGGTTCCAAATC

consensusID : consensus_7655#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 213
fasta sequence

                              [ATCTGTTCGTCAACCTCCTTCATGGACATGCGGCCTCTGAAGATGGCTGCAACTGTGAGGTAGCGGCCGTGGCGTGGGTCGCAGGCGGCCATCATGTTCTTGGCATCAAACATCTGCTGTGTCAACTCTGGGACAGTAAGGGCGCGGTACTGCTGTGAGCTGAGCTCGTAGATTCAGTTATGGATGTAGTTAGGAAAGAGGCTGAAAACTGCG]

[+] EMBL CD132431             [ATCTGTTCGTCAACCTCCTTCATGGACATGCGGCCTCTGAAGATGGCTGCAACTGTGAGGTAGCGGCCGTGGCGTGGGTCGCAGGCGGCCATCATGTTCTTGGCATCAAACATCTGCTGTGTCAACTCTGGGACAGTAAGGGCGCGGTACTGCTGTGAGCTGAGCTCGTAGATTCAGTTATGGATGTAGTTAGGAAAGAGGCTGAAAACTGCG]




>consensus_7655#2
ATCTGTTCGTCAACCTCCTTCATGGACATGCGGCCTCTGAAGATGGCTGCAACTGTGAGG
TAGCGGCCGTGGCGTGGGTCGCAGGCGGCCATCATGTTCTTGGCATCAAACATCTGCTGT
GTCAACTCTGGGACAGTAAGGGCGCGGTACTGCTGTGAGCTGAGCTCGTAGATTCAGTTA
TGGATGTAGTTAGGAAAGAGGCTGAAAACTGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7655#0      CACCTGGATGGCTGTGCTGTTGCCGATGAAAGTGGCAGACATCTTGAGACCACGTGGTGG 60
consensus_7655#2      ------------------------------------------------------------
consensus_7655#1      ------------------------------------------------------------
                                                                                  

consensus_7655#0      AATGTCGCAGACAGCTGTCTTAACATTGTTGGGGATCCATTCGACAAAGTAGGAGGAGTT 120
consensus_7655#2      ------------------------------------------------------------
consensus_7655#1      ------------------------------------------------------------
                                                                                  

consensus_7655#0      CTTGTTCTGGACATTGAGCATCAGTTCGTCAACTTCCTTCATGGACATGCGGCCTCTGAA 180
consensus_7655#2      -------------------ATCTGTTCGTCAACCTCCTTCATGGACATGCGGCCTCTGAA 41
consensus_7655#1      --------------------------CCAGTGCCGCCACCAAGTGAATGTGTGAGTTGGA 34
                                                *     *  **  ** *   *** *     ** *

consensus_7655#0      GATGGCTGCAACTGTGAGGTAGCGGCCGTGGCGTGGGTCGCAGGCGGCCATCATGTTCTT 240
consensus_7655#2      GATGGCTGCAACTGTGAGGTAGCGGCCGTGGCGTGGGTCGCAGGCGGCCATCATGTTCTT 101
consensus_7655#1      AACC-CTGTAA----GCAGTCGCAGTTTTCAGCCTCTTTCCTAACTACATCCATAA-CTG 88
                       *   *** **    *  ** ** *   *        *  *   *  *   ***   ** 

consensus_7655#0      GGCATCAAACATCTGCTGTGTCAACTCTGGGACAGTAAGGGCGCGGTACTGCTGTGAGTC 300
consensus_7655#2      GGCATCAAACATCTGCTGTGTCAACTCTGGGACAGTAAGGGCGCGGTACTGCTGTGAG-- 159
consensus_7655#1      AATATACGAGCTCAGCTCCCTCTGCGTAGTGACAT--ATAGCCCAGT--TGTTGCCAGCA 144
                         **   *  ** ***   **  *   * ****   *  ** * **  ** **  **  

consensus_7655#0      CCTGGATGTAAGGNGAGCGAACC--CTGGCATGGAGAAGTGG--AGACGGGNGAANGGCA 356
consensus_7655#2      -CTGA--GCTCGTAGATTCAGTT--ATGG-ATGTAGTTAGGA--AAGAGGCTGAAAACTG 211
consensus_7655#1      CCTGACTGTCCAAATACAAAGTTATCTGGTCTGAAAATATGACCAAAAGGCCCAGATCTG 204
                       ***   *       *   *      ***  ** *     *   *   **   *      

consensus_7655#0      CCATGNTTGACTGCAGTTTTTCTCAGTCAGCGNTCAACTGGNNCAGGAANCCTGAGCATG 416
consensus_7655#2      CG---------------------------------------------------------- 213
consensus_7655#1      ACACTGTCCATTGTACCGGGTTCCAAATC------------------------------- 233
                                                                                  

consensus_7655#0      TGGTCACACCGACATGGNTGCGCTGACTAGATGNNNTCAGTCACCATAG 465
consensus_7655#2      -------------------------------------------------
consensus_7655#1      -------------------------------------------------