cluster # 7661

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Schistosoma mansoni
cluster # 7661 cluster # 7661 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7661#0 length = 466 sequences # 2

consensus_7661#1 length = 393 sequences # 3

consensusID : consensus_7661#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 466
fasta sequence

                              [GTTTGAATGATGGTTCGACTGATGCATTTGGTGTTCTGGACGCTGACACTGGATCTAAATAGGTTTGTGAACGTGATCGGCGTTTACTTTCAGCTTCTTCGCGTAGAATAGCTTGTCCAATCCCTATGTGCTCAACAGAATGATCAATTGTATCAGGAATACCATCAAAGGAATAATCAATACTCAATGCTTCTTGACTTTCTAAATCATCAATATCGCCAGAAAACTGTGTACCACTTAAACGTGCTTGTTCTCTACGTCGTTGACGTCGTTCACGCATTAATTCCGCTAAAACAACACCAGAAGCAGGTGGCGCTGGCCAATCATAACGTTCAATTGGTCTTGGAGTACTTTTATCACGTTCTTGTCCAGCCGGTAAACAAGCTAATTTACGTGTTTCTACTGTGATATTACGATCATTTAATAAAATTGGACCAGATTGACTAGTATCGTCCCAACCCGNAGG]

[+] EMBL CD161065             [GTTTGAATGATGGTTCGACTGATGCATTTGGTGTTCTGGACGCTGACACTGGATCTAAATAGGTTTGTGAACGTGATCGGCGTTTACTTTCAGCTTCTTCGCGTAGAATAGCTTGTCCAATCCCTATGTGCTCAACAGAATGATCAATTGTATCAGGAATACCATCAAAGGAATAATCAATACTCAATGCTTCTTGACTTTCTAAATCATCAATATCGCCAGAAAACTGTGTACCACTTAAACGTGCTTGTTCTCTACGTCGTTGACGTCGTTCACGCATTAATTCCGCTAAAACAACACCAGAAGCAGGTGGCGCTGGCCAATCATAACGTTCAATTGGTCTTGGAGTACTTTTATCACGTTCTTGTCCAGCCGGTAAACAAGCTAATTTACGTGTTTCTACTGTGATATTACGATCATTTAATAAAATTGGACCAGATTGACTAGTATCGTCCCAACCCGNAGG]
[-] EMBL CD160977             [ TTTGAATGATGGTTCGACTGATGCATTTGGTGTTCTGGACGCTGACACTGGATCTAAATAGGTTTGTGAACGTGATCGGCGTTTACTTTCAGCTTCTTCGCGTAGAATAGCTTGTCCAGTCCCTATGTGCTCAACAGAATGATCAATTGTATCAGGAATACCATCAAAGGAATAATCAATACTCAATGCTTCTTGACTTTCTAAATCATCAATATCGCCAGAAAACTGTGTACCACTTAAACGTGCTTGTTCTCTACGTCGTTGACGTCGTTCACGCATTAATTCCGCTAAAACAACACCAGAAGCAGGTGGCGCTGGCCAATCATAACGTTCAATTGGTCTTGGAGTACTTTTATCACGTTCTTGTCCAGCCGGTAAACAAGCTAATTTACGTGTTTCTACTGTGATATTACGATCATTTAATAAAATTGGACCAGATTGACTA                    ]




>consensus_7661#0
GTTTGAATGATGGTTCGACTGATGCATTTGGTGTTCTGGACGCTGACACTGGATCTAAAT
AGGTTTGTGAACGTGATCGGCGTTTACTTTCAGCTTCTTCGCGTAGAATAGCTTGTCCAA
TCCCTATGTGCTCAACAGAATGATCAATTGTATCAGGAATACCATCAAAGGAATAATCAA
TACTCAATGCTTCTTGACTTTCTAAATCATCAATATCGCCAGAAAACTGTGTACCACTTA
AACGTGCTTGTTCTCTACGTCGTTGACGTCGTTCACGCATTAATTCCGCTAAAACAACAC
CAGAAGCAGGTGGCGCTGGCCAATCATAACGTTCAATTGGTCTTGGAGTACTTTTATCAC
GTTCTTGTCCAGCCGGTAAACAAGCTAATTTACGTGTTTCTACTGTGATATTACGATCAT
TTAATAAAATTGGACCAGATTGACTAGTATCGTCCCAACCCGNAGG

consensusID : consensus_7661#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 393
fasta sequence

                              [GTCGTTCACGCATTAATTCCGCTAAAACAACACCAGAAGCAGGTGGCGCTGGCCAATCATAACGTTCAATTGGTCTTGGAGTACTTTTATCACGTTCTTGTCCAGCCGGTAAACAAGCTAATTTACGTGTTTCTACTGTGATATTACGATCATTTAATAAAATTGGACCAGATTGACTAATATCGTCCATATATGTTCGATGTGATTTCGATGTTAATTGACTGGTATGTTCACTATTAATGTTATCATTGTAATTATTATTATCATCAGTGGTATCAGATAAGATTCTGGCGATTTTTTTTGTTGATGTTGTTGTCGATAATGACAGTTTATCAGTTTTAAGTTTATCATGTAAATTGAAAGCTGACAATGCAAAAGGTTTGTTTAGAGAAC]

[+] EMBL CD156427             [GTCGTTCACGCATTAATTCCGCTAAAACAACACCAGAAGCAGGTGGCGCTGGCCAATCATAACGTTCAATTGGTCTTGGAGTACTTTTATCACGTTCTTGTCCAGCCGGTAAACAAGCTAATTTACGTGTTTCTACTGTGATATTACGATCATTTAATAAAATTGGACCAGATTGACTAATATCGTCCATATATGTTCGATGTGATTTCGATGTTAATTGACTGGTATGTTCACTATTAATGTTATCATTGTAATTATTATTATCATCAGTGGTATCAGATAAGATTCTGGCGATTTTTTTTGTTGATGTTGTTGTCGATAATGACAGTTTATCAGTTTTAAGTTTATCATGTAAATTGAAAGCTGACAATGCAAAAGGTTTGTTT       ]
[-] EMBL CD156179             [ TCGTTCACGCATTAATTCCGCTAAAACAACACCAGAAGCAGGTGGCGCTGGCCAATCATAACGTTCAATTGGTCTTGGAGTACTTTTATCACGTTCTTGTCCAGCCGGTAAACAAGCTAATTTACGTGTTTCTACTGTGATATTACGATCATTTAATAAAATTGGACCAGATTGACTAATATCGTCCATATATGTTCGATGTGATTTCGATGTTAATTGACTGGTATGTTCACTATTAATGTTATCATTGTAATTATTATTATCATCAGTGGTATCAGATAAGATTCTGGCGATTTTTTTTGTTGATGTTGTTGTCGATAATGACAGTTTATCAGTTTTAAGTTTATCATGTAAATTGAAAGCTGACAATGCAAAAGGTTTGTTTAGAGAAC]
[-] EMBL CD156275             [                                                                                                                                                                                                                           GAATGGTATGTTCAATATTAATGTTATCATTGTAGTTATTATTATCATCAGTGGTATCAGATAAGATTATGACAATTTTTTTTGTTGATGTTGTTGTATATAATGACAGTTTATCAGTTTTAAGTTTATCATGTAAATTGAAAGTTGACAATGCAAAAGGTTTGTTTAta    ]




>consensus_7661#1
GTCGTTCACGCATTAATTCCGCTAAAACAACACCAGAAGCAGGTGGCGCTGGCCAATCAT
AACGTTCAATTGGTCTTGGAGTACTTTTATCACGTTCTTGTCCAGCCGGTAAACAAGCTA
ATTTACGTGTTTCTACTGTGATATTACGATCATTTAATAAAATTGGACCAGATTGACTAA
TATCGTCCATATATGTTCGATGTGATTTCGATGTTAATTGACTGGTATGTTCACTATTAA
TGTTATCATTGTAATTATTATTATCATCAGTGGTATCAGATAAGATTCTGGCGATTTTTT
TTGTTGATGTTGTTGTCGATAATGACAGTTTATCAGTTTTAAGTTTATCATGTAAATTGA
AAGCTGACAATGCAAAAGGTTTGTTTAGAGAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7661#0      GTTTGAATGATGGTTCGACTGATGCATTTGGTGTTCTGGACGCTGACACTGGATCTAAAT 60
consensus_7661#1      ---------------------GTCGTTCACGCATTAATTCCGCTAAAACAACACC---AG 36
                                            *   *   *  **     **** * **   * *   * 

consensus_7661#0      AGGTTTGTGAACGTGATCGGCGTTTACTTTCAGCTTCTTCGCGTAGAATAGCTTGTCCAA 120
consensus_7661#1      AAGCAGGTGGCGCTGGCCAATCATAACGTTCAATTGGT---CTTGGAGTACTTTTATCAC 93
                      * *   ***    **  *     * ** ****  *  *   * * ** **  **   ** 

consensus_7661#0      TCCCTATGTGCTCAACAGAATGATCAATTGTATCAGGAATACCATCAAAGGAATAATCAA 180
consensus_7661#1      GTTCT---TGTCCAGCCGGTAAACAAGCTAATTTACGTGTTTCTACTGTGATATTACGAT 150
                         **   **  ** * *    *  *  *   * * *  *  *  *   *  ** *  * 

consensus_7661#0      TACTCAATGCTTCTTGACTTTCTAAATCATCAATATCGCCAGAAAACTGTGTACCACTTA 240
consensus_7661#1      CATTTAATAAAATTGGAC---CAGATTGACTAATATCGTC---------CATATATGTTC 198
                       * * ***     * ***   *  * * *  ******* *           **    ** 

consensus_7661#0      AACGTGCTTGTTCTCTACGTCGTTGACGTCGTTCACGCATTAATTCCGCTAAAACAACAC 300
consensus_7661#1      GATGTGATT----TCGATGTTAATTGACTGGTATGTTCACTATTAATGTTAT-----CAT 249
                       * *** **    ** * **   *    * **     ** ** *   * **      ** 

consensus_7661#0      CAGAAGCAGGTGGCGCTGGCCAATCATAACGTTCAATTGGTCTTGGAGTACTTTTATCAC 360
consensus_7661#1      TGTAATTA--TTATTATCATCAGTGGTATCAGATAA--GATTCTGGCGATTTTTTTTGTT 305
                         **  *  *     *   ** *  ** *    **  * *  *** *   **** *   

consensus_7661#0      GTTCTTGTCCAGCCGGTAAACAAGCTAATTTACGTGTTTCTACTGTGATATTACGATCAT 420
consensus_7661#1      GATGTTGTT--GTCGATA---ATGACAGTTTATCAGTTTTAAGTTTATCATGTAAATTGA 360
                      * * ****   * ** **   * *  * ****   ****  * * *   **    **   

consensus_7661#0      TTAATAAAATTGGACCAGATTGACTAGTATCGTCCCAACCCGNAGG 466
consensus_7661#1      AAGCTGACAATGCAAAAGGTTTGTTTAGAGAAC------------- 393
                          * * * ** *  ** **   *   *