cluster # 7662

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Schistosoma mansoni
cluster # 7662 cluster # 7662 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7662#0 length = 646 sequences # 4

consensus_7662#1 length = 434 sequences # 1

consensusID : consensus_7662#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 646
fasta sequence

                              [ACCAACACCGCCTGAAACAATGTTGTTGGATGGTGTGCCTGAAGGTATTATTGTGGCTGCTCCTGCGCCAGTTATACCTTGATTAACACCAGATATCGAGCCCCCTCCTGACGTACCAAATACAGTAGCCGAAGATGGAGTATAACGAGTACCCAAGGATAGTAATCCTGAAGCTGCAGGTGTCAGTACAGTAGATTGTAGTCCAGCTGATTGAGCTGGAGGAGCACCTGCATTTAGAGGTTTACGGCTGGTGATACTACGTGAACCACGATTTGCATTGAGTGAAACCCAACGAGCATCATTACTACTCAAAGTGAAGCCTCCTCTACCAACATTCGACTTGTAACCAGTATGTTGGCTTAAGTGTTGGGCCAATTCAGGTTTCAGTAAACTCTTTCCACCCTGAACACTGCCTAACTGGATTTGACCACCACTTGCATCTTGGATGACGTATGCGCCAGCTTGATCTATTGGTAATTCAACGAGTTGTCCCAAACTGGGATCTATGGCAGGTATATTGGTGGCATATGCCGTCATGACTAACGACCCTCACCTGCCCTTAATATCGAAATAGTGACACAAAAGGAGCACAACACAANCAGGACGACACAGTACAAATTACAAATATGTGAAGATTCTTGAGGCA]

[+] EMBL CD160480             [ACCAACACCGCCTGAAACAATGTTGTTGGATGGTGTGCCTGAAGGTATTATTGTGGCTGCTCCTGCGCCAGTTATACCTTGATTAACACCAGATATCGAGCCCCCTCCTGACGTACCAAATACAGTAGCCGAAGATGGAGTATAACGAGTACCCAAGGATAGTAATCCTGAAGCTGCAGGTGTCAGTACAGTAGATTGTAGTCCAGCTGATTGAGCTGGAGGAGCACCTGCATTTAGAGGTTTACGGCTGGTGATACTACGTGAACCACGATTTGCATTGAGTGGAACCCAACGAGCATCATTACTACTCAAAGTGAAGCCTCCTCTACCAACATTCGACTTGTAACCAGTATGTTGGCTTAAGTGTTGGGCCAATCCAGGTTTCAGTAAACTCTTTCCACCCTGAACACTGCCTAACTGGATTTGACCACCACTTGCATCTTGGATGACGTATGCGCCAGCTTGATCTATTGGTAATTCAACGAGTTGTCCCAAACTGGGATCTATGGCAGGTATATTGGTGGCATATGCCGTCATGACTAACGACCCTCACCTGCCCTTAATATCGAAATAGTGACACAAAAGGAGCACAACACAANCAGGACGACACAGTACAAATTACAAATATGTGAAGATTCTTGAGGCA]
[+] EMBL CD199792             [                                                                                                                       ATACAGTAGCCGAAGATGGAGTATAACGAGTACCCAAGGATAGTAATCCTGATGCTGCAGGTGTCAGTACAGTAGATTGTAGTCCAGCTGATTGAGCTGGAGGAGCACCTGCATTTAGAGGTTTACGGCTGGTGATACTACGTGAACCACGATTTGCATTGAGTGAAACCCAACGAGCATCATTACTACTCAAAGTGAAGCCTCCTCTACCAACATTCGACTTGTAACCAGTATGTTGGCTTAAGTGTTGGGCCAATTCAGGTTTCAGT AACTCTTTCCACCCTGAACACTGCCTAACTGGATTTGACCACCACTTGCATCTTGGATGACGTATGCGCCAGCTTGATCT                                                                                                                                                                                 ]
[-] EMBL CD188045             [                                                                                                                          CAGTAGCCGAAGATGGAGTATAACGAGTACCCAAGGATAGTAATCCTGAAGCTGCAGGTGTCAGTACAGTAGATTGTAGTCCAGCTGATTGAGCTGGAGGAGCACCTGCATTTAGAGGTTTACGGCTGGTGATACTACGTGAACCACGATTTGCATTGAGTGAAACCCAACGAGCATCATTACAACTCAAAGTGAAGCCTCCTCTACCAACATTCGACTTGTAACCAGTATGTTGGCTTAAGTGTTGGGCCAATTCAGGTTTCAGTAAACTCTTTCCACCCTGAACACTGCCTAACTGGATTTGACCACCACTTGCATCTTGGATGACGTATGCGCCAGCTT                                                                                                                                                                                      ]
[-] EMBL CD188038             [                                                                                                                          CAGTAGCCGAAGATGGAGTATAACGAGTACCCAAGGATAGTAATCCTGAAGCTGCAGGTGTCAGTACAGTAGATTGTAGTCCAGCTGATTGAGCTGGAGGAGCACCTGCATTTAGAGGTTTACGGCTGGTGATACTACGTGAACCACGATTTGCATTGAGTGAAACCCAACGAGCATCATTACAACTCAAAGTGAAGCCTCCTCTACCAACATTCGACTTGTAACCAGTATGTTGGCTTAAGTGTTGGGCCAATTCAGGTTTCAGTAAACTCTTTCCACCCTGAACACTGCCTAACTGGATTTGACCACCACTTGCATCTTGGATGACGTATGCGCCAGCTT                                                                                                                                                                                      ]




>consensus_7662#0
ACCAACACCGCCTGAAACAATGTTGTTGGATGGTGTGCCTGAAGGTATTATTGTGGCTGC
TCCTGCGCCAGTTATACCTTGATTAACACCAGATATCGAGCCCCCTCCTGACGTACCAAA
TACAGTAGCCGAAGATGGAGTATAACGAGTACCCAAGGATAGTAATCCTGAAGCTGCAGG
TGTCAGTACAGTAGATTGTAGTCCAGCTGATTGAGCTGGAGGAGCACCTGCATTTAGAGG
TTTACGGCTGGTGATACTACGTGAACCACGATTTGCATTGAGTGAAACCCAACGAGCATC
ATTACTACTCAAAGTGAAGCCTCCTCTACCAACATTCGACTTGTAACCAGTATGTTGGCT
TAAGTGTTGGGCCAATTCAGGTTTCAGTAAACTCTTTCCACCCTGAACACTGCCTAACTG
GATTTGACCACCACTTGCATCTTGGATGACGTATGCGCCAGCTTGATCTATTGGTAATTC
AACGAGTTGTCCCAAACTGGGATCTATGGCAGGTATATTGGTGGCATATGCCGTCATGAC
TAACGACCCTCACCTGCCCTTAATATCGAAATAGTGACACAAAAGGAGCACAACACAANC
AGGACGACACAGTACAAATTACAAATATGTGAAGATTCTTGAGGCA

consensusID : consensus_7662#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 434
fasta sequence

                              [TACCAAATACAGTAGCCGAAGATGGAGTATAACGAGTACCCAAGGATAGTAATCCTGAAGCTGCAGGTGTCAGTACAGTAGATTGTAGTCCAGCTGATTGAGCTGGAGGAGCACCTGGTGATACTACGTGAACCACGATTTGCATTGAGTGAAACCCAACGAGCATCATTACTACTCAAAGTGAAGCCTCCTCTACCAACATTCGACTTGTAACCAGTATGTTGGCTTAAGTGTTGGGCCAATTCAGGTTTCAGTAAACTCTTTCCACCCTGAACACTGCCTAACTGGATTTGACCACCACTTGCATCTTGGATGACGTATGCGCCAGCTTGATCTATTGGTAATTCAACGAGTTGTCCCAAACTGGGATCTATGGCAGGTATATTGGTGGCATATGCCGTCATGACTAACGACCCTCACCTGCCCTTAATATC]

[-] EMBL CD163537             [TACCAAATACAGTAGCCGAAGATGGAGTATAACGAGTACCCAAGGATAGTAATCCTGAAGCTGCAGGTGTCAGTACAGTAGATTGTAGTCCAGCTGATTGAGCTGGAGGAGCACCTGGTGATACTACGTGAACCACGATTTGCATTGAGTGAAACCCAACGAGCATCATTACTACTCAAAGTGAAGCCTCCTCTACCAACATTCGACTTGTAACCAGTATGTTGGCTTAAGTGTTGGGCCAATTCAGGTTTCAGTAAACTCTTTCCACCCTGAACACTGCCTAACTGGATTTGACCACCACTTGCATCTTGGATGACGTATGCGCCAGCTTGATCTATTGGTAATTCAACGAGTTGTCCCAAACTGGGATCTATGGCAGGTATATTGGTGGCATATGCCGTCATGACTAACGACCCTCACCTGCCCTTAATATC]




>consensus_7662#1
TACCAAATACAGTAGCCGAAGATGGAGTATAACGAGTACCCAAGGATAGTAATCCTGAAG
CTGCAGGTGTCAGTACAGTAGATTGTAGTCCAGCTGATTGAGCTGGAGGAGCACCTGGTG
ATACTACGTGAACCACGATTTGCATTGAGTGAAACCCAACGAGCATCATTACTACTCAAA
GTGAAGCCTCCTCTACCAACATTCGACTTGTAACCAGTATGTTGGCTTAAGTGTTGGGCC
AATTCAGGTTTCAGTAAACTCTTTCCACCCTGAACACTGCCTAACTGGATTTGACCACCA
CTTGCATCTTGGATGACGTATGCGCCAGCTTGATCTATTGGTAATTCAACGAGTTGTCCC
AAACTGGGATCTATGGCAGGTATATTGGTGGCATATGCCGTCATGACTAACGACCCTCAC
CTGCCCTTAATATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7662#0      ACCAACACCGCCTGAAACAATGTTGTTGGATGGTGTGCCTGAAGGTATTATTGTGGCTGC 60
consensus_7662#1      ------------------------------------------------------------
                                                                                  

consensus_7662#0      TCCTGCGCCAGTTATACCTTGATTAACACCAGATATCGAGCCCCCTCCTGACGTACCAAA 120
consensus_7662#1      -----------------------------------------------------TACCAAA 7
                                                                           *******

consensus_7662#0      TACAGTAGCCGAAGATGGAGTATAACGAGTACCCAAGGATAGTAATCCTGAAGCTGCAGG 180
consensus_7662#1      TACAGTAGCCGAAGATGGAGTATAACGAGTACCCAAGGATAGTAATCCTGAAGCTGCAGG 67
                      ************************************************************

consensus_7662#0      TGTCAGTACAGTAGATTGTAGTCCAGCTGATTGAGCTGGAGGAGCACCTGCATTTAGAGG 240
consensus_7662#1      TGTCAGTACAGTAGATTGTAGTCCAGCTGATTGAGCTGGAGGAGCACCTG---------- 117
                      **************************************************          

consensus_7662#0      TTTACGGCTGGTGATACTACGTGAACCACGATTTGCATTGAGTGAAACCCAACGAGCATC 300
consensus_7662#1      ----------GTGATACTACGTGAACCACGATTTGCATTGAGTGAAACCCAACGAGCATC 167
                                **************************************************

consensus_7662#0      ATTACTACTCAAAGTGAAGCCTCCTCTACCAACATTCGACTTGTAACCAGTATGTTGGCT 360
consensus_7662#1      ATTACTACTCAAAGTGAAGCCTCCTCTACCAACATTCGACTTGTAACCAGTATGTTGGCT 227
                      ************************************************************

consensus_7662#0      TAAGTGTTGGGCCAATTCAGGTTTCAGTAAACTCTTTCCACCCTGAACACTGCCTAACTG 420
consensus_7662#1      TAAGTGTTGGGCCAATTCAGGTTTCAGTAAACTCTTTCCACCCTGAACACTGCCTAACTG 287
                      ************************************************************

consensus_7662#0      GATTTGACCACCACTTGCATCTTGGATGACGTATGCGCCAGCTTGATCTATTGGTAATTC 480
consensus_7662#1      GATTTGACCACCACTTGCATCTTGGATGACGTATGCGCCAGCTTGATCTATTGGTAATTC 347
                      ************************************************************

consensus_7662#0      AACGAGTTGTCCCAAACTGGGATCTATGGCAGGTATATTGGTGGCATATGCCGTCATGAC 540
consensus_7662#1      AACGAGTTGTCCCAAACTGGGATCTATGGCAGGTATATTGGTGGCATATGCCGTCATGAC 407
                      ************************************************************

consensus_7662#0      TAACGACCCTCACCTGCCCTTAATATCGAAATAGTGACACAAAAGGAGCACAACACAANC 600
consensus_7662#1      TAACGACCCTCACCTGCCCTTAATATC--------------------------------- 434
                      ***************************                                 

consensus_7662#0      AGGACGACACAGTACAAATTACAAATATGTGAAGATTCTTGAGGCA 646
consensus_7662#1      ----------------------------------------------