These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7666#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1502 fasta sequence [ATAATTGTTATTTTAAAACAAAATGTTTAAATATTCAATATATTTAGTGTAATATATAAATGAATATTCCATGGATACAATTTAATCACCATTTCATTTATAGACAAAGAAGTTATTATTACATCATTCTAAGTATTCTATTATTACCATTTATATTTACATTCATACAAAAATATCATTTATATAAATATAATGAAATAGATGAAGTATACAATAGTTATTCAACATTTCATGAATTAAAAAAGGATTTCGTGAATGGAAAATTCAAATTGAACACTGAAAAAATTAAAGAAATTGTTATTTATGGGAAAACAACAGTTCCTATCAATACTGACCTTCGAGGTTGTTTAGTATCGAATTGTGTACTTCACAAGACAAAATGGCGTTCATATTATGCTGAAATGGTTATTATTACCAATGGTAACTTTCCAAAAGTTAAAAATCATCAAAATCAAGCTTGGCTAGCATATCATTATGAAGCGCCTCCACATAGTCGTTTAAATAAACTATTAGGTGAAAAAATTAATTTCACCGCTACATATAGACTTGATTCAACCATACACTTACCATATGGAAAAGTTATAGAAAATCTTGAATATCATCAAAAGCTTAATAATAATGATGATAGTAGTCGTAGTAGTATTAGTACTGATAATTTCTTTAAACCACGAAATATATCTGCATTAAAGAAGAAAACTGTAGCATGGATTGTAAGTAATTGTCATCCGGATAGTCCAAGAAATTTATACGCCTATGAATTATCGAAATATATCACTGTTGATGTATACGGTAAATGTAGCCAACGAGAATGCCAAGATTCAAAATGTCATAAAATGTTAAAAGAACAATATAAGTTCTATTTAAGTTTTGAAAATTCTCTTTGTCAAGATTATATTACTGAAAAATTTTTTAAAAATGCTCTAATGAATGATGTTATACCAGTCGTAATGGGTGCATCAATTGAAGAGTATAAAAGTGTAGCACCACCAAATTCTTTTATACATGTTGATCAATTTTCTAGTCCAAGACAATTAGCTAAATATTTACATTATCTGGACAATAATCATACAGCATTTAATGAATATTTCATTTGGCAAAATAAATGGAAAGTATTATTATTCCCTGAACGACCAGAATGTGATTTTTGTTTGTTGGCTAATGCTTTGCCAAATCTCAAACCGTCTTGGTATATTGATGTTAATTCATGGTTTGACAGGAGTTGTCATGGAAGGAGGCTAAAATGGAAAGGAAATCAAAAAGATTTCTCTGCAGCTATTTGGTTTTCTAAATTGAAACAACAAAATCCTGTAACTACATCGACCAATTCACAAATGAATTAAAAATGATAGAAGAACATTCGACATTGACCAGTGAATATCTCATGAAGATATTATGTGATGGAGTTGTGATGTGAACATGAACGATTTCCAGTTTTGTTCTTTGTAAAGTCTATAGATTGAATTTTATTTTTACGGATATAAAAATATTAAAAAAAACATCTA] [+] EMBL AF183577 [ATAATTGTTATTTTAAAACAAAATGTTTAAATATTCAATATATTTAGTGTAATATATAAATGAATATTCCATGGATACAATTTAATCACCATTTCATTTATAGACAAAGAAGTTATTATTACATCATTCTAAGTATTCTATTATTACCATTTATATTTACATTCATACAAAAATATCATTTATATAAATATAATGAAATAGATGAAGTATACAATAGTTATTCAACATTTCATGAATTAAAAAAGGATTTCGTGAATGGAAAATTCAAATTGAACACTGAAAAAATTAAAGAAATTGTTATTTATGGGAAAACAACAGTTCCTATCAATACTGACCTTCGAGGTTGTTTAGTATCGAATTGTGTACTTCACAAGACAAAATGGCGTTCATATTATGCTGAAATGGTTATTATTACCAATGGTAACTTTCCAAAAGTTAAAAATCATCAAAATCAAGCTTGGCTAGCATATCATTATGAAGCGCCTCCACATAGTCGTTTAAATAAACTATTAGGTGAAAAAATTAATTTCACCGCTACATATAGACTTGATTCAACCATACACTTACCATATGGAAAAGTTATAGAAAATCTTGAATATCATCAAAAGCTTAATAATAATGATGATAGTAGTCGTAGTAGTATTAGTACTGATAATTTCTTTAAACCACGAAATATATCTGCATTAAAGAAGAAAACTGTAGCATGGATTGTAAGTAATTGTCATCCGGATAGTCCAAGAAATTTATACGCCTATGAATTATCGAAATATATCACTGTTGATGTATACGGTAAATGTAGCCAACGAGAATGCCAAGATTCAAAATGTCATAAAATGTTAAAAGAACAATATAAGTTCTATTTAAGTTTTGAAAATTCTCTTTGTCAAGATTATATTACTGAAAAATTTTTTAAAAATGCTCTAATGAATGATGTTATACCAGTCGTAATGGGTGCATCAATTGAAGAGTATAAAAGTGTAGCACCACCAAATTCTTTTATACATGTTGATCAATTTTCTAGTCCAAGACAATTAGCTAAATATTTACATTATCTGGACAATAATCATACAGCATTTAATGAATATTTCATTTGGCAAAATAAATGGAAAGTATTATTATTCCCTGAACGACCAGAATGTGATTTTTGTTTGTTGGCTAATGCTTTGCCAAATCTCAAACCGTCTTGGTATATTGATGTTAATTCATGGTTTGACAGGAGTTGTCATGGAAGGAGGCTAAAATGGAAAGGAAATCAAAAAGATTTCTCTGCAGCTATTTGGTTTTCTAAATTGAAACAACAAAATCCTGTAACTACATCGACCAATTCACAAATGAATTAAAAATGATAGAAGAACATTCGACATTGACCAGTGAATATCTCATGAAGATATTATGTGATGGAGTTGTGATGTGAACATGAACGATTTCCAGTTTTGTTCTTTGTAAAGTCTATAGATTGAATTTTATTTTTACGGATATAAAAATA ] [+] EMBL CD083759 [ GAGAATGCCAAGATTCAAAATGTCATAAAATGTTAAAAGAACAATAT AGTTCTATTTAAGTTTTGAAAATTCTCTTTGTCAAGATTATATTACTGAAAAATTTTTTAAAAATGCTCTAATGAATGATGTTATACCAGTCGTAATGGGTGCATCAATTGAAGAGTATAAAAGTGTAGCACCACCAAATTCTTTTATACATGTTGATCAATTTTCTAGTCCAAGACAATTAGCTAAATATTTACATTATCTGGACAATAATCATACAGCATTTAATGAATATTTCATTTGGCAAAATAAATGGAAAGTATTATTATTCCCTGAACGACCAGAATGTGATTTTTGTTTGTTGGCTAATGCTTTGCCAAATCTCAAACCGTCTTGGTATATTGATGTTAATTCATGGTTTGACAGGAGTTGTCATGGAAGGAGGCTAAAATGGAAAGGAAATCAAAAAGATTTCTCTGCAGCTATTTGGTTTTCTAAATTGAAACAACAAAATCCTGTAACTACATCGACCAATTCACAAATGAATTNAAAATGATAGAAGA ] [-] EMBL CD073877 [ ACAATATAAGTTCTATTTAAGTTTTGAAAATTCTCTTTGTCAAGATTATATTACTGAAAAATTTTTTAAAAATGCTCTAATGAATGATGTTATACCAGTCGTAATGGGTGCATCAATTGAAGAGTATAAAAGTGTAGCACCACCAAATTCTTTTATACATGTTGATCAATTTTCTAGTCCAAGACAATTAGCTAAATATTTACATTATCTGGACAATAATCATACAGCATTTAATGAATATTTCATTTGGCAAAATAAATGGAAAGTATTATTATTCCCTGAACGACCAGAATGTGATTTTTGTTTGTTGGCTAATGCTTTGCCAAATCTCAAACCGTCTTGGTATATTGATGTTAATTCATGGTTTGACAGGAGTTGTCATGGAAGGAGGCTAAAATGGAAAGGAAATCAAAAAGATTTCTCTGCAGCTATTTGGTTTTCTAAATTGAAACAACAAAATCCTGTAACTACATCGACCAATTCACAAATGAATTAAAAATGATAGAAGAACATTCGACATTGACCAGTGAATATCTCATGAAGATATTATGTGATGGAGTTGTGATGTGAACATGAACGATTTCCAGTTTTGTTCTTTGTAAAGTCTATAGATTGAATTTTATTTTTACGGATATAAAAATATTAAAAAAAACATCTA] [+] EMBL CD084420 [ aggCAGTCGTAATGGGTGCATCAATTGAAGAGTATAAAAGTGTAGCACCACCAAATTCTTTTATACATGTTGATCAATTTTCTAGTCCAAGACAATTAGCTAAATATTTACATTATCTGGACAATAATCATACAGCATTTAATGAATATTTCATTTGGCAAAATAAATGGAAAGTATTATTATTCCCTGAACGACCAGAATGTGATTTTTGTTTGTTGGCTAATGCTTTGCCAAATCTCAAACCGTCTTGGTATATTGATGTTAATTCATGGTTTGACAGGAGTTGTCATGGAAGGAGGCTAAAATGGAAAGGAAATCAAAAAGATTTCTCTGCAGCTATTTGGTTTTCTAAATTGAAACAACAAAATCCTGTAACTACATCGACCAATTCACAAATGAATTAAAAATGATAGAAGAACATTCGACATTGACCAGTGAATATCTCATGAAGATATTATGTGATGGAGTTGTGATGTGAACTTG ] consensusID : consensus_7666#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence [ATTTGGCATCGAGGACTTATTCAACATTTCATGAATTAAAAAAGGATTTTGTGAATGGAAAATTCAAATTGAACACTGAAAAAATTAAAGAAATTGTTATTTATGGGAAAACAACAGTTCCTATCAATACTGACCTTCGAGGTTGTTTAGTATCGAATTGTGTACTTCACAAGACAAAATGGCGTTCATATTATGCTGAAATGGTTATTATTACCAATGGTAACTTTCCAAAAGTTAAAAATCATCAAAATCAAGCTTGGCTAGCATATCATTATGAAGCGCCTCCACATAGTCGTTTAAATAAACTATTAGGTGAAAAAATTAATTTCACCGCTACATATAGACTTGATTCAACCATACACTTACCATATGGAAAAGTTATAGAAAATCTTGAATATCATCAAAAGCTTAATAATAATGATGATAGTAGTCGTAGTAGTATTAGTACTGATAATTTCTTTAAACCACGAAATATATCTGCATTAAAGAAGAAAACTGTAGCATGGATTGTAAGTAATTGTCATCCGGATAGTCCAAGAAATTTATACGCCTATGAATTATCGAAATATATCACTGTTGATGTATACGGTAAATGTAGCCAACGAGAATGCCAAGATTCANAATGTCATAAAATGTTAAAAGAACAATANTAGTTCTATTTAAGTTTTGAAATT] [+] EMBL CD079613 [ATTTGGCATCGAGGACTTATTCAACATTTCATGAATTAAAAAAGGATTTTGTGAATGGAAAATTCAAATTGAACACTGAAAAAATTAAAGAAATTGTTATTTATGGGAAAACAACAGTTCCTATCAATACTGACCTTCGAGGTTGTTTAGTATCGAATTGTGTACTTCACAAGACAAAATGGCGTTCATATTATGCTGAAATGGTTATTATTACCAATGGTAACTTTCCAAAAGTTAAAAATCATCAAAATCAAGCTTGGCTAGCATATCATTATGAAGCGCCTCCACATAGTCGTTTAAATAAACTATTAGGTGAAAAAATTAATTTCACCGCTACATATAGACTTGATTCAACCATACACTTACCATATGGAAAAGTTATAGAAAATCTTGAATATCATCAAAAGCTTAATAATAATGATGATAGTAGTCGTAGTAGTATTAGTACTGATAATTTCTTTAAACCACGAAATATATCTGCATTAAAGAAGAAAACTGTAGCATGGATTGTAAGTAATTGTCATCCGGATAGTCCAAGAAATTTATACGCCTATGAATTATCGAAATATATCACTGTTGATGTATACGGTAAATGTAGCCAACGAGAATGCCAAGATTCANAATGTCATAAAATGTTAAAAGAACAATANTAGTTCTATTTAAGTTTTGAAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7666#0 ATAATTGTTATTTTAAAACAAAATGTTTAAATATTCAATATATTTAGTGTAATATATAAA 60 consensus_7666#1 ------------------------------------------------------------ consensus_7666#0 TGAATATTCCATGGATACAATTTAATCACCATTTCATTTATAGACAAAGAAGTTATTATT 120 consensus_7666#1 ------------------------------------------------------------ consensus_7666#0 ACATCATTCTAAGTATTCTATTATTACCATTTATATTTACATTCATACAAAAATATCATT 180 consensus_7666#1 ------------------------------------------------------------ consensus_7666#0 TATATAAATATAATGAAATAGATGAAGTATACAATAGTTATTCAACATTTCATGAATTAA 240 consensus_7666#1 ---------------------ATTTGGCATCGAGGACTTATTCAACATTTCATGAATTAA 39 ** * ** * * *********************** consensus_7666#0 AAAAGGATTTCGTGAATGGAAAATTCAAATTGAACACTGAAAAAATTAAAGAAATTGTTA 300 consensus_7666#1 AAAAGGATTTTGTGAATGGAAAATTCAAATTGAACACTGAAAAAATTAAAGAAATTGTTA 99 ********** ************************************************* consensus_7666#0 TTTATGGGAAAACAACAGTTCCTATCAATACTGACCTTCGAGGTTGTTTAGTATCGAATT 360 consensus_7666#1 TTTATGGGAAAACAACAGTTCCTATCAATACTGACCTTCGAGGTTGTTTAGTATCGAATT 159 ************************************************************ consensus_7666#0 GTGTACTTCACAAGACAAAATGGCGTTCATATTATGCTGAAATGGTTATTATTACCAATG 420 consensus_7666#1 GTGTACTTCACAAGACAAAATGGCGTTCATATTATGCTGAAATGGTTATTATTACCAATG 219 ************************************************************ consensus_7666#0 GTAACTTTCCAAAAGTTAAAAATCATCAAAATCAAGCTTGGCTAGCATATCATTATGAAG 480 consensus_7666#1 GTAACTTTCCAAAAGTTAAAAATCATCAAAATCAAGCTTGGCTAGCATATCATTATGAAG 279 ************************************************************ consensus_7666#0 CGCCTCCACATAGTCGTTTAAATAAACTATTAGGTGAAAAAATTAATTTCACCGCTACAT 540 consensus_7666#1 CGCCTCCACATAGTCGTTTAAATAAACTATTAGGTGAAAAAATTAATTTCACCGCTACAT 339 ************************************************************ consensus_7666#0 ATAGACTTGATTCAACCATACACTTACCATATGGAAAAGTTATAGAAAATCTTGAATATC 600 consensus_7666#1 ATAGACTTGATTCAACCATACACTTACCATATGGAAAAGTTATAGAAAATCTTGAATATC 399 ************************************************************ consensus_7666#0 ATCAAAAGCTTAATAATAATGATGATAGTAGTCGTAGTAGTATTAGTACTGATAATTTCT 660 consensus_7666#1 ATCAAAAGCTTAATAATAATGATGATAGTAGTCGTAGTAGTATTAGTACTGATAATTTCT 459 ************************************************************ consensus_7666#0 TTAAACCACGAAATATATCTGCATTAAAGAAGAAAACTGTAGCATGGATTGTAAGTAATT 720 consensus_7666#1 TTAAACCACGAAATATATCTGCATTAAAGAAGAAAACTGTAGCATGGATTGTAAGTAATT 519 ************************************************************ consensus_7666#0 GTCATCCGGATAGTCCAAGAAATTTATACGCCTATGAATTATCGAAATATATCACTGTTG 780 consensus_7666#1 GTCATCCGGATAGTCCAAGAAATTTATACGCCTATGAATTATCGAAATATATCACTGTTG 579 ************************************************************ consensus_7666#0 ATGTATACGGTAAATGTAGCCAACGAGAATGCCAAGATTCAAAATGTCATAAAATGTTAA 840 consensus_7666#1 ATGTATACGGTAAATGTAGCCAACGAGAATGCCAAGATTCANAATGTCATAAAATGTTAA 639 ***************************************** ****************** consensus_7666#0 AAGAACAATATAAGTTCTATTTAAGTTTTGAAAATTCTCTTTGTCAAGATTATATTACTG 900 consensus_7666#1 AAGAACAATANTAGTTCTATTTAAGTTTTGAAATT------------------------- 674 ********** ********************* * consensus_7666#0 AAAAATTTTTTAAAAATGCTCTAATGAATGATGTTATACCAGTCGTAATGGGTGCATCAA 960 consensus_7666#1 ------------------------------------------------------------ consensus_7666#0 TTGAAGAGTATAAAAGTGTAGCACCACCAAATTCTTTTATACATGTTGATCAATTTTCTA 1020 consensus_7666#1 ------------------------------------------------------------ consensus_7666#0 GTCCAAGACAATTAGCTAAATATTTACATTATCTGGACAATAATCATACAGCATTTAATG 1080 consensus_7666#1 ------------------------------------------------------------ consensus_7666#0 AATATTTCATTTGGCAAAATAAATGGAAAGTATTATTATTCCCTGAACGACCAGAATGTG 1140 consensus_7666#1 ------------------------------------------------------------ consensus_7666#0 ATTTTTGTTTGTTGGCTAATGCTTTGCCAAATCTCAAACCGTCTTGGTATATTGATGTTA 1200 consensus_7666#1 ------------------------------------------------------------ consensus_7666#0 ATTCATGGTTTGACAGGAGTTGTCATGGAAGGAGGCTAAAATGGAAAGGAAATCAAAAAG 1260 consensus_7666#1 ------------------------------------------------------------ consensus_7666#0 ATTTCTCTGCAGCTATTTGGTTTTCTAAATTGAAACAACAAAATCCTGTAACTACATCGA 1320 consensus_7666#1 ------------------------------------------------------------ consensus_7666#0 CCAATTCACAAATGAATTAAAAATGATAGAAGAACATTCGACATTGACCAGTGAATATCT 1380 consensus_7666#1 ------------------------------------------------------------ consensus_7666#0 CATGAAGATATTATGTGATGGAGTTGTGATGTGAACATGAACGATTTCCAGTTTTGTTCT 1440 consensus_7666#1 ------------------------------------------------------------ consensus_7666#0 TTGTAAAGTCTATAGATTGAATTTTATTTTTACGGATATAAAAATATTAAAAAAAACATC 1500 consensus_7666#1 ------------------------------------------------------------ consensus_7666#0 TA 1502 consensus_7666#1 -- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||