cluster # 7668

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Schistosoma mansoni
cluster # 7668 cluster # 7668 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7668#0 length = 1182 sequences # 3

consensus_7668#1 length = 453 sequences # 1
consensus_7668#2 length = 435 sequences # 1

consensusID : consensus_7668#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1182
fasta sequence

                              [GGCACGCGGGTGGGTTTCACATCGGNCTCGGTCACCCAAATACTCTGCAACTATTCGTCCTAATTTAGACGAAAGTTCTCATATAGTCAGTAAGATGCTTTAAGCACCGGATCTATCGACTGTTCACACTCAACAGCTAGACCTAATTTGTATGCATTTTCACATTGACAATCACCAAACCAATTACTTTATACTCTTGATAGTTGTGCAATAACATGTGTTGATGTCATTTTTCAATTGAATCATAGTTTACTAGTCAAAAGAATAGCCGAAGTTCCTGGATATAAACCAACCTGTAAGTCTTCAATACTAAAATTGTTCGTAACAGAACTATCACTGTATTTGTACAAAAGTTAATTTGTTTGTATCTCTACTTACGTGTATGATGATTGAATAAGTATATGTAAATTGAATCACTCTAGGTTGGAGGGTGTGAGCCTTCGAATGAAGGTGTAGTCTTGTCAGAATCATTTCAAAAGTACAACAAAATTTGTTGAGGATAGACGTTGCGAACTAATTCGTTGAACAGATAGATATCCATAGAGTAACAGTGAGACATCACTCACTAATTTACTGATAGATGGAACTCGATCAACATTGAATAACGAATTATTACTGTGTTTGCCTTTCGGTAATAATACAAATTCACCGTGTTCGAGTTTCATTTCTAAAGAACATCTATTCATAGTGTCTATGATCACAGACAACGCATCCAAACAGAAATATAACAACCATGTAAGAGAACTGAACAGTGAATTCTTTCCTCACAAGTTATTATTTCGATCTTNCATTGAATGAAATCAAGTGTATATTTGAGTCACTCAAAACTATAATAAATGGTACATCCAATGGATCAATTGTACAACGTACAANAGTAACATGTGTAACACGAGTGGACCNTACTNTTCATTAGATACTCACCAATACTCAATTTAACGTATTCCCATCAACCTAATCGATTTTAATGACATTTTGTAGATGTTGGATTCGAAGTACCGAATGTATTCATAGNTGGGTATGGCATTGACTACACGATCAGNTTCGTGAATTGCACATGTGTGTGCAGTGACGATGAAGGCAACGTGAATCCTTGCAAGGNTACATCTCGACTCGNTTCCATGATTACCGAGTATTCATATTTGAATCATACTATACAGAGAATATCTGACTATTTGCAAATAT]

[+] EMBL CD081160             [GGCACGCGGGTGGGTTTCACATCGGNCTCGGTCACCCAAATACTCTGCAACTATTCGTCCTAATTTAGACGAAAGTTCTCATATAGTCAGTAAGATGCTTTAAGCACCGGATCTATCGACTGTTCACACTCAACAGCTAGACCTAATTTGTATGCATTTTCACATTGACAATCACCAAACCAATTACTTTATACTCTTGATAGTTGTGCAATAACATGTGTTGATGTCATTTTTCAATTGAATCATAGTTTACTAGTCAAAAGAATAGCCGAAGTTCCTGGATATAAACCAACCTGTAAGTCTTCAATACTAAAATTGTTCGTAACAGAACTATCACTGTATTTGTACAAAAGTTAATTTGTTTGTATCTCTACTTACGTGTATGATGATTGAATAAGTATATGTAAATTGAATCACTCTAGGTTGGAGGGTGTGAGCCTTCGAATGAAGGTGTAGTCTTGTCAGAATCATTTCAAAAGTACAACAAAATTTGTTGAGGATAGACGTTGCGAACTAATTCGTTGAACAGATAGATATCCATAGAGTAACAGTGAGACATCACTCACTAATTTACTGATAGATGGAACTCGATCAACATTGAATAACGAATTATTACTGTGTTTGCCTTTCGGTAATAATACAAATTCACCGTGTTCGAGTTTCATTTCTAAAGAACATCTATTCATAGTGTCTATGATCACAGACAACGCATCCAAACAGAAATATAACAACCATGTAAGAGAACTGAACAGTGAATTCTTTCCTCACAAGTTATTATTTCGATCTTNCATTGAATGAAATCAAGTGTATATTTGAGTCACTCAAAACTATAATAAATGGTACATCCAATGGATCAATTGTACAACGTACAANAGTAACATGTGTAACACGAGTGGACCNTACTNTTCATTAGATACTCACCAATACTCAATTTAACGTATTCCCATCAACCTAATCGATTTTAATGACATTTTGTAGATGTTGGATTCGAAGTACCGAATGTATTCATAGNTGGGTATGGCATTGACTACACGATCAGNTTCGTGAATTGCACATGTGTGTGCAGTGACGATGAAGGCAACGTGAATCCTTGCAAGGNTACATCTCGACTCGNTTCCATGATTACCGAGTATTCATATTTGAATCATACTATACAGAGAATATCTGACTATTTGCAAATAT]
[+] EMBL CD167013             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AAAATTTGTTGAGGATAGACGTTGCGAACTAATTCGTTGAACAGATAGATATCCATAGAGTAACAGTGAGACATCACTCACTAATTTACTGATAGATGGAACTCGATCAACATTGAATAACGAATTATTACTGTGTTTGCCTTTCGGTAATAATACAAATTCACCGTGTTCGAGTTTCATTTCTAAAGAACATCTATTCATAGTGTCTATGATCACAGACAACGCATCCAAACAGAAATATAACAACCATGTAAGAGAACTGAACAGTGAATTCTTTCCTCACAAGTTATTATT                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD064913             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AAAATTTGTTGAGGATAGACGTTGCGAACTAATTCGTTGAACAGATAGATATCCATAGAGTAACAGTGAGACATCACTCACTGATTTACTGATAGATGGAACTCGATCAACATTGAATAACGAATTATTACTGTGTTTGCCTTTCGGTAATAATACAAATTCACCGTGTTCGAGTTTCATTTCTAAAGAACATCTATTCATAGTGTCTATGATCACAGACAACGCATCCAAACAGAAATATAACAACCATGgta                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]




>consensus_7668#0
GGCACGCGGGTGGGTTTCACATCGGNCTCGGTCACCCAAATACTCTGCAACTATTCGTCC
TAATTTAGACGAAAGTTCTCATATAGTCAGTAAGATGCTTTAAGCACCGGATCTATCGAC
TGTTCACACTCAACAGCTAGACCTAATTTGTATGCATTTTCACATTGACAATCACCAAAC
CAATTACTTTATACTCTTGATAGTTGTGCAATAACATGTGTTGATGTCATTTTTCAATTG
AATCATAGTTTACTAGTCAAAAGAATAGCCGAAGTTCCTGGATATAAACCAACCTGTAAG
TCTTCAATACTAAAATTGTTCGTAACAGAACTATCACTGTATTTGTACAAAAGTTAATTT
GTTTGTATCTCTACTTACGTGTATGATGATTGAATAAGTATATGTAAATTGAATCACTCT
AGGTTGGAGGGTGTGAGCCTTCGAATGAAGGTGTAGTCTTGTCAGAATCATTTCAAAAGT
ACAACAAAATTTGTTGAGGATAGACGTTGCGAACTAATTCGTTGAACAGATAGATATCCA
TAGAGTAACAGTGAGACATCACTCACTAATTTACTGATAGATGGAACTCGATCAACATTG
AATAACGAATTATTACTGTGTTTGCCTTTCGGTAATAATACAAATTCACCGTGTTCGAGT
TTCATTTCTAAAGAACATCTATTCATAGTGTCTATGATCACAGACAACGCATCCAAACAG
AAATATAACAACCATGTAAGAGAACTGAACAGTGAATTCTTTCCTCACAAGTTATTATTT
CGATCTTNCATTGAATGAAATCAAGTGTATATTTGAGTCACTCAAAACTATAATAAATGG
TACATCCAATGGATCAATTGTACAACGTACAANAGTAACATGTGTAACACGAGTGGACCN
TACTNTTCATTAGATACTCACCAATACTCAATTTAACGTATTCCCATCAACCTAATCGAT
TTTAATGACATTTTGTAGATGTTGGATTCGAAGTACCGAATGTATTCATAGNTGGGTATG
GCATTGACTACACGATCAGNTTCGTGAATTGCACATGTGTGTGCAGTGACGATGAAGGCA
ACGTGAATCCTTGCAAGGNTACATCTCGACTCGNTTCCATGATTACCGAGTATTCATATT
TGAATCATACTATACAGAGAATATCTGACTATTTGCAAATAT

consensusID : consensus_7668#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 453
fasta sequence

                              [CTCCCAAGTTATTATTTCGATTTTCATTGAAAGGAAATCAAGTGTATATTTGAGTCCCTCAAAACTATAATAAATGGTCCATCCAATGATCAATTGTAACAACGTACAAAGTAAACATGTGTACCCCGAGTGGACCCTACTTTTCATTAGATACTCCCCAATACTCAATTTAACGTATTCCATCAACCCTAATCGATTTAAATGCCATTTTGTAGATGTTGGATTCGAAGTCCCGAATGTATTCATAGTTGGTTAGGGCATTGATTACAACGATCAGTTCCGTGAATTGCCCCATGTGTGTCCAGTGAACGATGAAGGCAAACGTGAATTCCTTGGCAAAGGTTAACATCTCGAACTTCGTTTACCCATGTATTAACCGAGTAATTTCATCATTTGAATCCATCATTTATCCAGAAGAATTTGTATTGTACTATTTTTGCAAAAATATTTGTT]

[-] EMBL CD074977             [CTCCCAAGTTATTATTTCGATTTTCATTGAAAGGAAATCAAGTGTATATTTGAGTCCCTCAAAACTATAATAAATGGTCCATCCAATGATCAATTGTAACAACGTACAAAGTAAACATGTGTACCCCGAGTGGACCCTACTTTTCATTAGATACTCCCCAATACTCAATTTAACGTATTCCATCAACCCTAATCGATTTAAATGCCATTTTGTAGATGTTGGATTCGAAGTCCCGAATGTATTCATAGTTGGTTAGGGCATTGATTACAACGATCAGTTCCGTGAATTGCCCCATGTGTGTCCAGTGAACGATGAAGGCAAACGTGAATTCCTTGGCAAAGGTTAACATCTCGAACTTCGTTTACCCATGTATTAACCGAGTAATTTCATCATTTGAATCCATCATTTATCCAGAAGAATTTGTATTGTACTATTTTTGCAAAAATATTTGTT]




>consensus_7668#1
CTCCCAAGTTATTATTTCGATTTTCATTGAAAGGAAATCAAGTGTATATTTGAGTCCCTC
AAAACTATAATAAATGGTCCATCCAATGATCAATTGTAACAACGTACAAAGTAAACATGT
GTACCCCGAGTGGACCCTACTTTTCATTAGATACTCCCCAATACTCAATTTAACGTATTC
CATCAACCCTAATCGATTTAAATGCCATTTTGTAGATGTTGGATTCGAAGTCCCGAATGT
ATTCATAGTTGGTTAGGGCATTGATTACAACGATCAGTTCCGTGAATTGCCCCATGTGTG
TCCAGTGAACGATGAAGGCAAACGTGAATTCCTTGGCAAAGGTTAACATCTCGAACTTCG
TTTACCCATGTATTAACCGAGTAATTTCATCATTTGAATCCATCATTTATCCAGAAGAAT
TTGTATTGTACTATTTTTGCAAAAATATTTGTT

consensusID : consensus_7668#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 435
fasta sequence

                              [GAATTCTTTCCTCACAAGTTATTATTTCGATCTTCATTGAAATGAAATCAAGTGTATATTTGAGTCACTCAAAACTATAATAAATGGTACATCCAATGATCAATTGTAACAACGTACAAAGTAAACATGTGTAACACGAGTGGAACCTACTTTTCATTAGATACTCACCAATACTCAATTTAACGTATTCCATCAAACCTAATCGATTTAAATGACATTTTGTAGATGTTGGATTCGAAGTACCGAATGTATTCATAGTTGGTTATGGCATTGACTACAACGATCAGTTCCGTGAATTGCCAGTAAGTGAATTGAACGAATGGATAATTTGTTGTTATTATGCCGTTTGTGTTTGTTATATATGTGAGATGATGAAGTTGAATGTGTCGAATAACTAACATGTATTGGAGAGTGATGAGTAGGTATGATGCGTCG]

[-] EMBL CD064007             [GAATTCTTTCCTCACAAGTTATTATTTCGATCTTCATTGAAATGAAATCAAGTGTATATTTGAGTCACTCAAAACTATAATAAATGGTACATCCAATGATCAATTGTAACAACGTACAAAGTAAACATGTGTAACACGAGTGGAACCTACTTTTCATTAGATACTCACCAATACTCAATTTAACGTATTCCATCAAACCTAATCGATTTAAATGACATTTTGTAGATGTTGGATTCGAAGTACCGAATGTATTCATAGTTGGTTATGGCATTGACTACAACGATCAGTTCCGTGAATTGCCAGTAAGTGAATTGAACGAATGGATAATTTGTTGTTATTATGCCGTTTGTGTTTGTTATATATGTGAGATGATGAAGTTGAATGTGTCGAATAACTAACATGTATTGGAGAGTGATGAGTAGGTATGATGCGTCG]




>consensus_7668#2
GAATTCTTTCCTCACAAGTTATTATTTCGATCTTCATTGAAATGAAATCAAGTGTATATT
TGAGTCACTCAAAACTATAATAAATGGTACATCCAATGATCAATTGTAACAACGTACAAA
GTAAACATGTGTAACACGAGTGGAACCTACTTTTCATTAGATACTCACCAATACTCAATT
TAACGTATTCCATCAAACCTAATCGATTTAAATGACATTTTGTAGATGTTGGATTCGAAG
TACCGAATGTATTCATAGTTGGTTATGGCATTGACTACAACGATCAGTTCCGTGAATTGC
CAGTAAGTGAATTGAACGAATGGATAATTTGTTGTTATTATGCCGTTTGTGTTTGTTATA
TATGTGAGATGATGAAGTTGAATGTGTCGAATAACTAACATGTATTGGAGAGTGATGAGT
AGGTATGATGCGTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7668#0      GGCACGCGGGTGGGTTTCACATCGGNCTCGGTCACCCAAATACTCTGCAACTATTCGTCC 60
consensus_7668#1      ------------------------------------------------------------
consensus_7668#2      ------------------------------------------------------------
                                                                                  

consensus_7668#0      TAATTTAGACGAAAGTTCTCATATAGTCAGTAAGATGCTTTAAGCACCGGATCTATCGAC 120
consensus_7668#1      ------------------------------------------------------------
consensus_7668#2      ------------------------------------------------------------
                                                                                  

consensus_7668#0      TGTTCACACTCAACAGCTAGACCTAATTTGTATGCATTTTCACATTGACAATCACCAAAC 180
consensus_7668#1      ------------------------------------------------------------
consensus_7668#2      ------------------------------------------------------------
                                                                                  

consensus_7668#0      CAATTACTTTATACTCTTGATAGTTGTGCAATAACATGTGTTGATGTCATTTTTCAATTG 240
consensus_7668#1      ------------------------------------------------------------
consensus_7668#2      ------------------------------------------------------------
                                                                                  

consensus_7668#0      AATCATAGTTTACTAGTCAAAAGAATAGCCGAAGTTCCTGGATATAAACCAACCTGTAAG 300
consensus_7668#1      ------------------------------------------------------------
consensus_7668#2      ------------------------------------------------------------
                                                                                  

consensus_7668#0      TCTTCAATACTAAAATTGTTCGTAACAGAACTATCACTGTATTTGTACAAAAGTTAATTT 360
consensus_7668#1      ------------------------------------------------------------
consensus_7668#2      ------------------------------------------------------------
                                                                                  

consensus_7668#0      GTTTGTATCTCTACTTACGTGTATGATGATTGAATAAGTATATGTAAATTGAATCACTCT 420
consensus_7668#1      ------------------------------------------------------------
consensus_7668#2      ------------------------------------------------------------
                                                                                  

consensus_7668#0      AGGTTGGAGGGTGTGAGCCTTCGAATGAAGGTGTAGTCTTGTCAGAATCATTTCAAAAGT 480
consensus_7668#1      ------------------------------------------------------------
consensus_7668#2      ------------------------------------------------------------
                                                                                  

consensus_7668#0      ACAACAAAATTTGTTGAGGATAGACGTTGCGAACTAATTCGTTGAACAGATAGATATCCA 540
consensus_7668#1      ------------------------------------------------------------
consensus_7668#2      ------------------------------------------------------------
                                                                                  

consensus_7668#0      TAGAGTAACAGTGAGACATCACTCACTAATTTACTGATAGATGGAACTCGATCAACATTG 600
consensus_7668#1      ------------------------------------------------------------
consensus_7668#2      ------------------------------------------------------------
                                                                                  

consensus_7668#0      AATAACGAATTATTACTGTGTTTGCCTTTCGGTAATAATACAAATTCACCGTGTTCGAGT 660
consensus_7668#1      ------------------------------------------------------------
consensus_7668#2      ------------------------------------------------------------
                                                                                  

consensus_7668#0      TTCATTTCTAAAGAACATCTATTCATAGTGTCTATGATCACAGACAACGCATCCAAACAG 720
consensus_7668#1      ------------------------------------------------------------
consensus_7668#2      ------------------------------------------------------------
                                                                                  

consensus_7668#0      AAATATAACAACCATGTAAGAGAACTGAACAGTGAATTCTTTCCTCACAAGTTATTATTT 780
consensus_7668#1      -------------------------------------------CTCCCAAGTTATTATTT 17
consensus_7668#2      ---------------------------------GAATTCTTTCCTCACAAGTTATTATTT 27
                                                                 *** *************

consensus_7668#0      CGATCTTNCATTGAATGAAATCAAGTGTATATTTGAGTCACTCAAAACTATAATAAATGG 840
consensus_7668#1      CGATTTTCATTGAAAGGAAATCAAGTGTATATTTGAGTCCCTCAAAACTATAATAAATGG 77
consensus_7668#2      CGATCTTCATTGAAATGAAATCAAGTGTATATTTGAGTCACTCAAAACTATAATAAATGG 87
                      **** **   *  ** *********************** ********************

consensus_7668#0      TACATCCAATGGATCAATTGTA-CAACGTACAANAGTAACATGTGTAACACGAGTGGACC 899
consensus_7668#1      TCCATCCAATG-ATCAATTGTAACAACGTACAAAGTAAACATGTGTACCCCGAGTGGACC 136
consensus_7668#2      TACATCCAATG-ATCAATTGTAACAACGTACAAAGTAAACATGTGTAACACGAGTGGAAC 146
                      * ********* ********** **********    ********** * ******** *

consensus_7668#0      NTACTNTTCATTAGATACTCACCAATACTCAATTTAACGTATTCCCATCAACCTAATCGA 959
consensus_7668#1      CTACTTTTCATTAGATACTCCCCAATACTCAATTTAACGTATTCCATCAACCCTAATCGA 196
consensus_7668#2      CTACTTTTCATTAGATACTCACCAATACTCAATTTAACGTATTCCATCAAACCTAATCGA 206
                       **** ************** ************************    * *********

consensus_7668#0      TTTTAATGACATTTTGTAGATGTTGGATTCGAAGTACCGAATGTATTCATAGNTGGGTAT 1019
consensus_7668#1      TTTAAATGCCATTTTGTAGATGTTGGATTCGAAGTCCCGAATGTATTCATAGTTGGTTAG 256
consensus_7668#2      TTTAAATGACATTTTGTAGATGTTGGATTCGAAGTACCGAATGTATTCATAGTTGGTTAT 266
                      *** **** ************************** **************** *** ** 

consensus_7668#0      GGCATTGACTACA-CGATCAGNTTCGTGAATTGCAC-ATGTGTGTGCAGTGA-CGATGAA 1076
consensus_7668#1      GGCATTGATTACAACGATCAGTTCCGTGAATTGCCCCATGTGTGTCCAGTGAACGATGAA 316
consensus_7668#2      GGCATTGACTACAACGATCAGTTCCGTGAATTGCCA---GTAAGTGAATTGA---ACGAA 320
                      ******** **** ******* * **********     **  **  * ***   * ***

consensus_7668#0      GGCAA-CGTGAATCCTT--GCAAGGNT--ACATCTCGA--CTCGNTT--CCATG-ATTA- 1125
consensus_7668#1      GGCAAACGTGAATTCCTTGGCAAAGGTTAACATCTCGAACTTCGTTTACCCATGTATTAA 376
consensus_7668#2      TGGA----TAATTTGTT--GTTATTAT--GCCGTTTGTG-TTTGTTA---TATATGTGAG 368
                       * *    * * *   *  *  *   *   *   * *    * * *     **   * * 

consensus_7668#0      CCGAGTA--TTCAT-AT-TTGAATCATAC---TATACAGAGAA-----TATCTGACTATT 1173
consensus_7668#1      CCGAGTAATTTCATCAT-TTGAATCCATCATTTATCCAGAAGAATTTGTATTGTACTATT 435
consensus_7668#2      ATGATGAAGTTGAATGTGTCGAATAACTAACATGTATTGGAGAGTGATGAGTAGGTATGA 428
                        **  *  ** *   * * ****        * *   *   *      *          

consensus_7668#0      T--GCAAATAT------- 1182
consensus_7668#1      TTTGCAAAAATATTTGTT 453
consensus_7668#2      TGCGTCG----------- 435
                      *  *